Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

51498067 .. 51502457

Gene Structure 4391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG350400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCTAATTTTTTCATAAGCACTGCTTTTATGGTGGTCACTCTTCTGCACTACCATGTACATGGAGATCATCAGCAGAAGCATTCTGACAGAGAAACTAAAGAAGCTGGAAATGAAGGATGTGATATGTTCCAAGGGAGGTGGGTTTCCGATGAGTCATATCCGCTCTACAATTCATCACAATGCTCCTTCGTAGAGAGAGAGTTCACTTGCATACAAAACGGGCGTCCGGACGAATTTTATCTCAAATTCCGGTGGCAGCCCACTGGTTGCAACTTAACAAGGTTCAACGGGGGAGATTTCTTGAAAAGATATAGAGGGAAGAGCTTCATGTTTGTTGGGGACTCGTTGAGTTTGAATCAATGGCAGTCACTCACTTGCATGCTTCATACAGCTGTTCCAGATGCCGACTATACACTTGTTAGGGCTGGAGACCTATCCACATTCACCTTCCCAGAATACAATGTTAAGGTGATGTTCTCTCGGAATGCATTTCTGGTCGATACAATAGCAACACCTGCTGGCCGAGTTCTTAAGCTCGACTCTATTGAAAGTGGGAAACTTTGGAAGGGAATTGACTTCTTGATCTTCAACACATGGCACTGGTGGCTGCACACTGGAAGGAAGCAACCTTGGGATCTTATTCAAGAAGGAAACAGTACCTATAAAGACATGGACCGGTTGGTTGCGTATGAGAAAGGGCTCAAAACATGGGCTAAATGGGTAGACACCAATGTGGACCAAACAAAAACCAGAGTCTTCTTCCAAGGAGTTTCCCCAGATCACAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

264

Amino Acids

30.77

Weight (kDa)

7.11

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	40 - 92	8.5e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	93 - 263	4.6e-58	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	726
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	1 cut(s)	645
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	2 cut(s)	236, 248
AcyI	GRCGYC	1 cut(s)	226
AfaI	GTAC	2 cut(s)	60, 661
AflII	CTTAAG	1 cut(s)	533
AgeI	ACCGGT	1 cut(s)	678
AgsI	TTSAA	6 cut(s)	289, 307, 358, 551, 592, 647
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	4 cut(s)	107, 327, 395, 538
AluI	AGCT	4 cut(s)	107, 327, 395, 538
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	645
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	1 cut(s)	523
ApeKI	GCWGC	2 cut(s)	259, 610
ApoI	RAATTY	2 cut(s)	236, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AsiGI	ACCGGT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	2 cut(s)	676, 739
AsuHPI	GGTGA	2 cut(s)	439, 484
AvaII	GGWCC	2 cut(s)	676, 739
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	2 cut(s)	271, 597
BcoDI	GTCTC	1 cut(s)	426
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	2 cut(s)	260, 611
BlsI	GCNGC	2 cut(s)	261, 612
Bme18I	GGWCC	2 cut(s)	676, 739
BmgT120I	GGNCC	2 cut(s)	676, 739
BmsI	GCATC	1 cut(s)	394
BpiI	GAAGAC	1 cut(s)	751
BpmI	CTGGAG	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	226
BsaI	GGTCTC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	133, 632, 766
BsaWI	WCCGGW	3 cut(s)	229, 252, 678
Bse118I	RCCGGY	1 cut(s)	678
Bse1I	ACTGG	3 cut(s)	271, 608, 622
BseAI	TCCGGA	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	133, 632, 766
BseGI	GGATG	1 cut(s)	125
BseNI	ACTGG	3 cut(s)	271, 608, 622
BseXI	GCAGC	2 cut(s)	271, 597
BsgI	GTGCAG	2 cut(s)	32, 596
BshFI	GGCC	1 cut(s)	525
BshTI	ACCGGT	1 cut(s)	678
BsiSI	CCGG	3 cut(s)	230, 253, 679
BslFI	GGGAC	1 cut(s)	356
BsmAI	GTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	2 cut(s)	82, 493
BsnI	GGCC	1 cut(s)	525
Bso31I	GGTCTC	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp13I	TCCGGA	1 cut(s)	229
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	67, 585, 637, 781
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	525
BspEI	TCCGGA	1 cut(s)	229
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	1 cut(s)	645
BspQI	GCTCTTC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	426
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	678
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	271, 608, 622
BssAI	RCCGGY	1 cut(s)	678
BssECI	CCNNGG	3 cut(s)	133, 632, 766
BssMI	GATC	4 cut(s)	67, 585, 637, 781
BssNI	GRCGYC	1 cut(s)	226
BssT1I	CCWWGG	3 cut(s)	133, 632, 766
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	48, 317
BstACI	GRCGYC	1 cut(s)	226
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	383, 523
BstF5I	GGATG	1 cut(s)	125
BstKTI	GATC	4 cut(s)	70, 588, 640, 784
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	4 cut(s)	67, 585, 637, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 607
BstNSI	RCATGY	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	271, 597
BstV2I	GAAGAC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	525
BtsCI	GGATG	1 cut(s)	125
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 264, 601, 615
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	383, 523
Cfr10I	RCCGGY	1 cut(s)	678
Cfr13I	GGNCC	2 cut(s)	676, 739
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	59, 660
CspAI	ACCGGT	1 cut(s)	678
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviAII	CATG	7 cut(s)	56, 62, 331, 382, 597, 673, 711
CviQI	GTAC	2 cut(s)	59, 660
DpnI	GATC	4 cut(s)	69, 587, 639, 783
DpnII	GATC	4 cut(s)	67, 585, 637, 781
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	2 cut(s)	48, 317
EarI	CTCTTC	2 cut(s)	48, 317
Eco130I	CCWWGG	3 cut(s)	133, 632, 766
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	426
Eco47I	GGWCC	2 cut(s)	676, 739
EcoT14I	CCWWGG	3 cut(s)	133, 632, 766
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	3 cut(s)	133, 632, 766
FaeI	CATG	7 cut(s)	59, 65, 334, 385, 600, 676, 714
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	7 cut(s)	55, 61, 330, 381, 596, 672, 710
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	2 cut(s)	260, 611
FokI	GGATG	1 cut(s)	132
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	2 cut(s)	260, 611
GluI	GCNGC	2 cut(s)	260, 611
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	1 cut(s)	525
HapII	CCGG	3 cut(s)	230, 253, 679
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	226
Hin1II	CATG	7 cut(s)	59, 65, 334, 385, 600, 676, 714
HinfI	GANTC	5 cut(s)	155, 344, 358, 542, 756
HpaII	CCGG	3 cut(s)	230, 253, 679
HphI	GGTGA	2 cut(s)	439, 484
Hpy166II	GTNNAC	3 cut(s)	207, 727, 739
Hpy188I	TCNGA	3 cut(s)	88, 151, 486
Hpy188III	TCNNGA	5 cut(s)	230, 304, 401, 583, 647
Hpy8I	GTNNAC	3 cut(s)	207, 727, 739
HpyAV	CCTTC	6 cut(s)	110, 199, 460, 562, 615, 644
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4V	TGCA	6 cut(s)	49, 213, 273, 381, 491, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 607
Hsp92I	GRCGYC	1 cut(s)	226
Hsp92II	CATG	7 cut(s)	59, 65, 334, 385, 600, 676, 714
Kpn2I	TCCGGA	1 cut(s)	229
Kzo9I	GATC	4 cut(s)	67, 585, 637, 781
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	2 cut(s)	271, 597
LweI	GCATC	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	37, 369
MalI	GATC	4 cut(s)	69, 587, 639, 783
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	4 cut(s)	67, 585, 637, 781
MboII	GAAGA	5 cut(s)	35, 334, 580, 751, 754
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	5 cut(s)	7, 172, 236, 248, 573
MlyI	GAGTC	4 cut(s)	164, 338, 536, 765
MnlI	CCTC	2 cut(s)	132, 311
Mph1103I	ATGCAT	1 cut(s)	493
MroI	TCCGGA	1 cut(s)	229
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	3 cut(s)	278, 468, 534
MslI	CAYNNNNRTG	5 cut(s)	54, 60, 181, 380, 734
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	3 cut(s)	230, 253, 679
Mva1269I	GAATGC	2 cut(s)	82, 493
MwoI	GCNNNNNNNGC	2 cut(s)	518, 607
NdeII	GATC	4 cut(s)	67, 585, 637, 781
NlaIII	CATG	7 cut(s)	59, 65, 334, 385, 600, 676, 714
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	2 cut(s)	37, 369
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	385
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	2 cut(s)	82, 493
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	678
PkrI	GCNGC	2 cut(s)	261, 612
PleI	GAGTC	4 cut(s)	163, 338, 536, 764
PpsI	GAGTC	4 cut(s)	163, 338, 536, 764
PspPI	GGNCC	2 cut(s)	676, 739
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	60, 661
RsaNI	GTAC	2 cut(s)	59, 660
RseI	CAYNNNNRTG	5 cut(s)	54, 60, 181, 380, 734
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	278, 468, 534
SatI	GCNGC	2 cut(s)	260, 611
Sau3AI	GATC	4 cut(s)	67, 585, 637, 781
Sau96I	GGNCC	2 cut(s)	676, 739
SchI	GAGTC	4 cut(s)	164, 338, 536, 765
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	1 cut(s)	394
SinI	GGWCC	2 cut(s)	676, 739
SmiMI	CAYNNNNRTG	5 cut(s)	54, 60, 181, 380, 734
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	7, 172, 236, 248, 573
SsiI	CCGC	1 cut(s)	164
StyI	CCWWGG	3 cut(s)	133, 632, 766
TaaI	ACNGT	1 cut(s)	659
TaqI	TCGA	2 cut(s)	501, 540
TasI	AATT	5 cut(s)	7, 172, 236, 248, 573
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	278, 468, 534
Tru9I	TTAA	3 cut(s)	278, 468, 534
TscAI	CASTG	4 cut(s)	28, 271, 608, 622
TseFI	GTSAC	2 cut(s)	37, 369
TseI	GCWGC	2 cut(s)	259, 610
Tsp45I	GTSAC	2 cut(s)	37, 369
TspDTI	ATGAA	5 cut(s)	4, 129, 165, 319, 377
TspRI	CASTG	4 cut(s)	28, 271, 608, 622
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	2 cut(s)	676, 739
XapI	RAATTY	2 cut(s)	236, 248
XceI	RCATGY	1 cut(s)	385
XmiI	GTMKAC	1 cut(s)	726
XmnI	GAANNNNTTC	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.