Rh2AG480500

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000737
Physical Location & Seq
Forward (+)
70001552 .. 70003991
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG480500.1

Sequence Viewer

Length: 768 bp
ATGTTTGTTGGAGACTCGTTAAGTTTGAACCAGTGGCAGTCTCTCACGTGTATGCTTCATGCAGCCTCACCACAATCCAAGTACACTATTGAAAGAACAGGAAGCATCTCTACAATGACATTCCTGAGTCACAATGCTTCTTTGATGCTTGCACGCAATGCACTTCTTGTTGACATTGTAGAAGAAAGACAGGGGAGGGTTTTGAAGCTGGACTCCATTGATCATAAGGATCAGAAAGCATGGAAAGACATTGATATATTGATTTTCAACTCATGGCATTGGTGGCTCCATACAGGAAGGAAACAACCGTGGGATTTTATTCAAGATGGAGACAATTTACATGAAGACATGGATCGCCTTGTTGCTTATGAGAAAGCCTTAAAAACTTGGGCTCGATGGGTGGACAAAAATGTTGATCCGACTAAAACCAAAGTCTTCTTTCAAGGGATTTCACCCACTCATTGGAATTCAAGTTATTGGGGGTACCCTGAAGGGAAGAATTGCAGCAGGGAAACACAACCACTAATAGTGCCACCATACCCAAGAAGCCGACACCCGGCAGAAGGGATTGTGGAAAAAGTATTGAGCGACATGTCAAAGCTGGTGGGTTTGCTCAATGTAACAGGACTGTCCCGGCTAAGGAAAGATGCACACCCATCCATATATGGCAACGGAGGGCACCGCGGCATGGACTGCAGCCACTGGTGTCTAGCTGGAGTTCCTGATACTTGGAACAGGCTGGTATACGCTGAAGTCATTCGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

255

Amino Acids

29.34

Weight (kDa)

8.62

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 1 - 250 7.2e-83 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 483
AccB1I GGYRCC 2 cut(s) 483, 678
AccB7I CCANNNNNTGG 1 cut(s) 462
AccI GTMKAC 1 cut(s) 744
AccII CGCG 1 cut(s) 684
AciI CCGC 2 cut(s) 682, 684
AclWI GGATC 3 cut(s) 237, 360, 410
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 510
AcvI CACGTG 1 cut(s) 48
AfaI GTAC 2 cut(s) 83, 485
AfiI CCNNNNNNNGG 5 cut(s) 462, 556, 563, 639, 688
AflIII ACRYGT 2 cut(s) 47, 591
AgsI TTSAA 7 cut(s) 28, 92, 205, 268, 323, 443, 471
AluBI AGCT 3 cut(s) 208, 601, 713
AluI AGCT 3 cut(s) 208, 601, 713
Alw26I GTCTC 3 cut(s) 6, 45, 324
AlwI GGATC 3 cut(s) 237, 360, 410
AlwNI CAGNNNCTG 1 cut(s) 702
ApeKI GCWGC 3 cut(s) 62, 504, 696
ApoI RAATTY 1 cut(s) 466
Asp700I GAANNNNTTC 1 cut(s) 756
Asp718I GGTACC 1 cut(s) 483
AsuC2I CCSGG 2 cut(s) 557, 634
AsuHPI GGTGA 2 cut(s) 60, 444
BaeGI GKGCMC 1 cut(s) 681
BanI GGYRCC 2 cut(s) 483, 678
BanII GRGCYC 1 cut(s) 394
BarI GAAGNNNNNNTAC 2 cut(s) 94, 126
BbrPI CACGTG 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 351, 427
BbvI GCAGC 3 cut(s) 74, 516, 708
BccI CCATC 3 cut(s) 320, 390, 664
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 2 cut(s) 557, 634
BcoDI GTCTC 3 cut(s) 6, 45, 324
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 694
BisI GCNGC 4 cut(s) 63, 505, 685, 697
BlsI GCNGC 4 cut(s) 64, 506, 686, 698
Bme1390I CCNGG 2 cut(s) 557, 634
BmiI GGNNCC 3 cut(s) 287, 485, 680
BmrFI CCNGG 2 cut(s) 557, 634
BmsI GCATC 3 cut(s) 114, 135, 637
BpiI GAAGAC 2 cut(s) 351, 427
BpmI CTGGAG 1 cut(s) 735
Bpu10I CCTNAGC 1 cut(s) 638
BpuMI CCSGG 2 cut(s) 557, 634
BsaAI YACGTR 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 308, 682
Bsc4I CCNNNNNNNGG 5 cut(s) 462, 556, 563, 639, 688
Bse1I ACTGG 2 cut(s) 31, 707
Bse3DI GCAATG 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 308, 682
BseGI GGATG 1 cut(s) 656
BseLI CCNNNNNNNGG 5 cut(s) 462, 556, 563, 639, 688
BseMI GCAATG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 2 cut(s) 31, 707
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 3 cut(s) 74, 516, 708
Bsh1236I CGCG 1 cut(s) 684
BshNI GGYRCC 2 cut(s) 483, 678
BsiSI CCGG 2 cut(s) 557, 634
BslFI GGGAC 1 cut(s) 616
BslI CCNNNNNNNGG 5 cut(s) 462, 556, 563, 639, 688
BsmAI GTCTC 3 cut(s) 6, 45, 324
BsmFI GGGAC 1 cut(s) 616
Bsp1286I GDGCHC 2 cut(s) 394, 681
Bsp143I GATC 4 cut(s) 220, 229, 352, 415
BspACI CCGC 2 cut(s) 682, 684
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 1 cut(s) 684
BspLI GGNNCC 3 cut(s) 287, 485, 680
BspMAI CTGCAG 1 cut(s) 698
BspPI GGATC 3 cut(s) 237, 360, 410
BspT107I GGYRCC 2 cut(s) 483, 678
BsrDI GCAATG 1 cut(s) 163
BsrI ACTGG 2 cut(s) 31, 707
BssECI CCNNGG 2 cut(s) 308, 682
BssMI GATC 4 cut(s) 220, 229, 352, 415
BssNAI GTATAC 1 cut(s) 745
Bst1107I GTATAC 1 cut(s) 745
Bst4CI ACNGT 2 cut(s) 309, 630
BstAPI GCANNNNNTGC 2 cut(s) 158, 693
BstBAI YACGTR 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 150, 154
BstDEI CTNAG 2 cut(s) 125, 638
BstDSI CCRYGG 2 cut(s) 308, 682
BstF5I GGATG 1 cut(s) 656
BstFNI CGCG 1 cut(s) 684
BstKTI GATC 4 cut(s) 223, 232, 355, 418
BstMAI GTCTC 3 cut(s) 6, 45, 324
BstMBI GATC 4 cut(s) 220, 229, 352, 415
BstMWI GCNNNNNNNGC 3 cut(s) 158, 283, 693
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 555, 632
BstSFI CTRYAG 1 cut(s) 694
BstSLI GKGCMC 1 cut(s) 681
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 3 cut(s) 74, 516, 708
BstV2I GAAGAC 2 cut(s) 351, 427
BstZ17I GTATAC 1 cut(s) 745
BtgI CCRYGG 2 cut(s) 308, 682
BtsCI GGATG 1 cut(s) 656
BtsIMutI CAGTG 2 cut(s) 38, 700
Cac8I GCNNGC 2 cut(s) 150, 154
CaiI CAGNNNCTG 1 cut(s) 702
Cfr42I CCGCGG 1 cut(s) 685
Csp6I GTAC 2 cut(s) 82, 484
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 7 cut(s) 59, 240, 273, 341, 349, 592, 688
CviQI GTAC 2 cut(s) 82, 484
DdeI CTNAG 2 cut(s) 125, 638
DpnI GATC 4 cut(s) 222, 231, 354, 417
DpnII GATC 4 cut(s) 220, 229, 352, 415
Eco24I GRGCYC 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 510
Eco72I CACGTG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 394
FaeI CATG 7 cut(s) 62, 243, 276, 344, 352, 595, 691
FaqI GGGAC 1 cut(s) 616
FatI CATG 7 cut(s) 58, 239, 272, 340, 348, 591, 687
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 4 cut(s) 63, 505, 685, 697
FokI GGATG 1 cut(s) 643
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 4 cut(s) 63, 505, 685, 697
FspBI CTAG 1 cut(s) 710
GluI GCNGC 4 cut(s) 63, 505, 685, 697
GsuI CTGGAG 1 cut(s) 735
HapII CCGG 2 cut(s) 557, 634
Hin1II CATG 7 cut(s) 62, 243, 276, 344, 352, 595, 691
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 3 cut(s) 14, 127, 212
HpaII CCGG 2 cut(s) 557, 634
HphI GGTGA 2 cut(s) 60, 444
Hpy166II GTNNAC 4 cut(s) 84, 172, 403, 745
Hpy188I TCNGA 2 cut(s) 234, 420
Hpy188III TCNNGA 3 cut(s) 124, 323, 722
Hpy8I GTNNAC 4 cut(s) 84, 172, 403, 745
Hpy99I CGWCG 1 cut(s) 765
HpyAV CCTTC 3 cut(s) 291, 485, 557
HpyCH4III ACNGT 2 cut(s) 309, 630
HpyCH4IV ACGT 2 cut(s) 47, 763
HpyCH4V TGCA 6 cut(s) 62, 152, 161, 504, 650, 696
HpyF10VI GCNNNNNNNGC 3 cut(s) 158, 283, 693
HpyF3I CTNAG 2 cut(s) 125, 638
HpySE526I ACGT 2 cut(s) 47, 763
Hsp92II CATG 7 cut(s) 62, 243, 276, 344, 352, 595, 691
KpnI GGTACC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 220
KspI CCGCGG 1 cut(s) 685
Kzo9I GATC 4 cut(s) 220, 229, 352, 415
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 3 cut(s) 74, 516, 708
LweI GCATC 3 cut(s) 114, 135, 637
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 47, 763
MaeIII GTNAC 2 cut(s) 128, 619
MalI GATC 4 cut(s) 222, 231, 354, 417
MboI GATC 4 cut(s) 220, 229, 352, 415
MboII GAAGA 4 cut(s) 194, 356, 427, 508
MhlI GDGCHC 2 cut(s) 394, 681
MluCI AATT 3 cut(s) 334, 466, 499
MlyI GAGTC 3 cut(s) 8, 136, 206
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 3 cut(s) 76, 189, 668
MroXI GAANNNNTTC 1 cut(s) 756
MseI TTAA 3 cut(s) 20, 380, 766
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 684
MspI CCGG 2 cut(s) 557, 634
MspR9I CCNGG 2 cut(s) 557, 634
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 3 cut(s) 158, 283, 693
NciI CCSGG 2 cut(s) 557, 634
NdeII GATC 4 cut(s) 220, 229, 352, 415
NlaIII CATG 7 cut(s) 62, 243, 276, 344, 352, 595, 691
NlaIV GGNNCC 3 cut(s) 287, 485, 680
NmuCI GTSAC 1 cut(s) 128
NspI RCATGY 1 cut(s) 595
PciI ACATGT 1 cut(s) 591
PdmI GAANNNNTTC 1 cut(s) 756
PflMI CCANNNNNTGG 1 cut(s) 462
PkrI GCNGC 4 cut(s) 64, 506, 686, 698
PleI GAGTC 3 cut(s) 8, 135, 206
PmaCI CACGTG 1 cut(s) 48
PmlI CACGTG 1 cut(s) 48
PpsI GAGTC 3 cut(s) 8, 135, 206
Ppu21I YACGTR 1 cut(s) 48
PscI ACATGT 1 cut(s) 591
PspCI CACGTG 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 287, 485, 680
PstI CTGCAG 1 cut(s) 698
PstNI CAGNNNCTG 1 cut(s) 702
RsaI GTAC 2 cut(s) 83, 485
RsaNI GTAC 2 cut(s) 82, 484
RseI CAYNNNNRTG 1 cut(s) 50
SacII CCGCGG 1 cut(s) 685
SaqAI TTAA 3 cut(s) 20, 380, 766
SatI GCNGC 4 cut(s) 63, 505, 685, 697
Sau3AI GATC 4 cut(s) 220, 229, 352, 415
SchI GAGTC 3 cut(s) 8, 136, 206
ScrFI CCNGG 2 cut(s) 557, 634
SduI GDGCHC 2 cut(s) 394, 681
SetI ASST 5 cut(s) 50, 210, 603, 715, 766
SfaNI GCATC 3 cut(s) 114, 135, 637
SfcI CTRYAG 1 cut(s) 694
Sfr303I CCGCGG 1 cut(s) 685
SgrBI CCGCGG 1 cut(s) 685
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 3 cut(s) 334, 466, 499
SsiI CCGC 2 cut(s) 682, 684
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 555, 632
TaaI ACNGT 2 cut(s) 309, 630
TaiI ACGT 2 cut(s) 50, 766
TaqI TCGA 2 cut(s) 394, 760
TasI AATT 3 cut(s) 334, 466, 499
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 687
Tru1I TTAA 3 cut(s) 20, 380, 766
Tru9I TTAA 3 cut(s) 20, 380, 766
TscAI CASTG 2 cut(s) 38, 707
TseFI GTSAC 1 cut(s) 128
TseI GCWGC 3 cut(s) 62, 504, 696
Tsp45I GTSAC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 47, 357
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 2 cut(s) 38, 707
Van91I CCANNNNNTGG 1 cut(s) 462
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 756
XspI CTAG 1 cut(s) 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.