Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

62975342 .. 62977781

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG466800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTTGTTGGAGACTCGTTAAGTTTGAACCAGTGGCAGTCTCTCACGTGTATGCTTCATGCAGCCTCACCACAATCCAAGTACACTATTGAAAGAACAGGAAGCATCTCTACAATGACATTCCTGAGTCACAATGCTTCTTTGATGCTTGCACGCAATGCACTTCTTGTTGACATTGTAGAAGAAAGACAGGGGAGGGTTTTGAAGCTGGACTCCATTGATCATAAGGATCAGAAAGCATGGAAAGACATTGATATATTGATTTTCAACTCATGGCATTGGTGGCTCCATACAGGAAGGAAACAACCGTGGGATTTTATTCAAGATGGAGACAATTTACATGAAGACATGGATCGCCTTGTTGCTTATGAGAAAGCCTTAAAAACTTGGGCTCGATGGGTGGACAAAAATGTTGATCCGACTAAAACCAAAGTCTTCTTTCAAGGGATTTCACCCACTCATTGGAATTCAAGTTATTGGGGGTACCCTGAAGGGAAGAATTGCAGCAGGGAAACACAACCACTAATAGTGCCACCATACCCAAGAAGCCGACACCCGGCAGAAGGGATTGTGGAAAAAGTATTGAGCGACATGTCAAAGCTGGTGGGTTTGCTCAATGTAACAGGACTGTCCCGGCTAAGGAAAGATGCACACCCATCCATATATGGCAACGGAGGGCACCGCGGCATGGACTGCAGCCACTGGTGTCTAGCTGGAGTTCCTGATACTTGGAACAGGCTGGTATACGCTGAAGTCATTCGACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

255

Amino Acids

29.34

Weight (kDa)

8.62

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 250	7.2e-83	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	483
AccB1I	GGYRCC	2 cut(s)	483, 678
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	1 cut(s)	684
AciI	CCGC	2 cut(s)	682, 684
AclWI	GGATC	3 cut(s)	237, 360, 410
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	48
AfaI	GTAC	2 cut(s)	83, 485
AfiI	CCNNNNNNNGG	5 cut(s)	462, 556, 563, 639, 688
AflIII	ACRYGT	2 cut(s)	47, 591
AgsI	TTSAA	7 cut(s)	28, 92, 205, 268, 323, 443, 471
AluBI	AGCT	3 cut(s)	208, 601, 713
AluI	AGCT	3 cut(s)	208, 601, 713
Alw26I	GTCTC	3 cut(s)	6, 45, 324
AlwI	GGATC	3 cut(s)	237, 360, 410
AlwNI	CAGNNNCTG	1 cut(s)	702
ApeKI	GCWGC	3 cut(s)	62, 504, 696
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	756
Asp718I	GGTACC	1 cut(s)	483
AsuC2I	CCSGG	2 cut(s)	557, 634
AsuHPI	GGTGA	2 cut(s)	60, 444
BaeGI	GKGCMC	1 cut(s)	681
BanI	GGYRCC	2 cut(s)	483, 678
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	94, 126
BbrPI	CACGTG	1 cut(s)	48
BbsI	GAAGAC	2 cut(s)	351, 427
BbvI	GCAGC	3 cut(s)	74, 516, 708
BccI	CCATC	3 cut(s)	320, 390, 664
BclI	TGATCA	1 cut(s)	220
BcnI	CCSGG	2 cut(s)	557, 634
BcoDI	GTCTC	3 cut(s)	6, 45, 324
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	694
BisI	GCNGC	4 cut(s)	63, 505, 685, 697
BlsI	GCNGC	4 cut(s)	64, 506, 686, 698
Bme1390I	CCNGG	2 cut(s)	557, 634
BmiI	GGNNCC	3 cut(s)	287, 485, 680
BmrFI	CCNGG	2 cut(s)	557, 634
BmsI	GCATC	3 cut(s)	114, 135, 637
BpiI	GAAGAC	2 cut(s)	351, 427
BpmI	CTGGAG	1 cut(s)	735
Bpu10I	CCTNAGC	1 cut(s)	638
BpuMI	CCSGG	2 cut(s)	557, 634
BsaAI	YACGTR	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	5 cut(s)	462, 556, 563, 639, 688
Bse1I	ACTGG	2 cut(s)	31, 707
Bse3DI	GCAATG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	308, 682
BseGI	GGATG	1 cut(s)	656
BseLI	CCNNNNNNNGG	5 cut(s)	462, 556, 563, 639, 688
BseMI	GCAATG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	31, 707
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	3 cut(s)	74, 516, 708
Bsh1236I	CGCG	1 cut(s)	684
BshNI	GGYRCC	2 cut(s)	483, 678
BsiSI	CCGG	2 cut(s)	557, 634
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	5 cut(s)	462, 556, 563, 639, 688
BsmAI	GTCTC	3 cut(s)	6, 45, 324
BsmFI	GGGAC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	394, 681
Bsp143I	GATC	4 cut(s)	220, 229, 352, 415
BspACI	CCGC	2 cut(s)	682, 684
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	684
BspLI	GGNNCC	3 cut(s)	287, 485, 680
BspMAI	CTGCAG	1 cut(s)	698
BspPI	GGATC	3 cut(s)	237, 360, 410
BspT107I	GGYRCC	2 cut(s)	483, 678
BsrDI	GCAATG	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	31, 707
BssECI	CCNNGG	2 cut(s)	308, 682
BssMI	GATC	4 cut(s)	220, 229, 352, 415
BssNAI	GTATAC	1 cut(s)	745
Bst1107I	GTATAC	1 cut(s)	745
Bst4CI	ACNGT	2 cut(s)	309, 630
BstAPI	GCANNNNNTGC	2 cut(s)	158, 693
BstBAI	YACGTR	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	150, 154
BstDEI	CTNAG	2 cut(s)	125, 638
BstDSI	CCRYGG	2 cut(s)	308, 682
BstF5I	GGATG	1 cut(s)	656
BstFNI	CGCG	1 cut(s)	684
BstKTI	GATC	4 cut(s)	223, 232, 355, 418
BstMAI	GTCTC	3 cut(s)	6, 45, 324
BstMBI	GATC	4 cut(s)	220, 229, 352, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 283, 693
BstNSI	RCATGY	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	555, 632
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	681
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	3 cut(s)	74, 516, 708
BstV2I	GAAGAC	2 cut(s)	351, 427
BstZ17I	GTATAC	1 cut(s)	745
BtgI	CCRYGG	2 cut(s)	308, 682
BtsCI	GGATG	1 cut(s)	656
BtsIMutI	CAGTG	2 cut(s)	38, 700
Cac8I	GCNNGC	2 cut(s)	150, 154
CaiI	CAGNNNCTG	1 cut(s)	702
Cfr42I	CCGCGG	1 cut(s)	685
Csp6I	GTAC	2 cut(s)	82, 484
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CviAII	CATG	7 cut(s)	59, 240, 273, 341, 349, 592, 688
CviQI	GTAC	2 cut(s)	82, 484
DdeI	CTNAG	2 cut(s)	125, 638
DpnI	GATC	4 cut(s)	222, 231, 354, 417
DpnII	GATC	4 cut(s)	220, 229, 352, 415
Eco24I	GRGCYC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	510
Eco72I	CACGTG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	7 cut(s)	62, 243, 276, 344, 352, 595, 691
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	7 cut(s)	58, 239, 272, 340, 348, 591, 687
FbaI	TGATCA	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	4 cut(s)	63, 505, 685, 697
FokI	GGATG	1 cut(s)	643
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	4 cut(s)	63, 505, 685, 697
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	4 cut(s)	63, 505, 685, 697
GsuI	CTGGAG	1 cut(s)	735
HapII	CCGG	2 cut(s)	557, 634
Hin1II	CATG	7 cut(s)	62, 243, 276, 344, 352, 595, 691
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	14, 127, 212
HpaII	CCGG	2 cut(s)	557, 634
HphI	GGTGA	2 cut(s)	60, 444
Hpy166II	GTNNAC	4 cut(s)	84, 172, 403, 745
Hpy188I	TCNGA	2 cut(s)	234, 420
Hpy188III	TCNNGA	3 cut(s)	124, 323, 722
Hpy8I	GTNNAC	4 cut(s)	84, 172, 403, 745
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	3 cut(s)	291, 485, 557
HpyCH4III	ACNGT	2 cut(s)	309, 630
HpyCH4IV	ACGT	2 cut(s)	47, 763
HpyCH4V	TGCA	6 cut(s)	62, 152, 161, 504, 650, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 283, 693
HpyF3I	CTNAG	2 cut(s)	125, 638
HpySE526I	ACGT	2 cut(s)	47, 763
Hsp92II	CATG	7 cut(s)	62, 243, 276, 344, 352, 595, 691
KpnI	GGTACC	1 cut(s)	487
Ksp22I	TGATCA	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	685
Kzo9I	GATC	4 cut(s)	220, 229, 352, 415
LmnI	GCTCC	1 cut(s)	291
Lsp1109I	GCAGC	3 cut(s)	74, 516, 708
LweI	GCATC	3 cut(s)	114, 135, 637
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	2 cut(s)	47, 763
MaeIII	GTNAC	2 cut(s)	128, 619
MalI	GATC	4 cut(s)	222, 231, 354, 417
MboI	GATC	4 cut(s)	220, 229, 352, 415
MboII	GAAGA	4 cut(s)	194, 356, 427, 508
MhlI	GDGCHC	2 cut(s)	394, 681
MluCI	AATT	3 cut(s)	334, 466, 499
MlyI	GAGTC	3 cut(s)	8, 136, 206
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	3 cut(s)	76, 189, 668
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	3 cut(s)	20, 380, 766
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	2 cut(s)	557, 634
MspR9I	CCNGG	2 cut(s)	557, 634
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	3 cut(s)	158, 283, 693
NciI	CCSGG	2 cut(s)	557, 634
NdeII	GATC	4 cut(s)	220, 229, 352, 415
NlaIII	CATG	7 cut(s)	62, 243, 276, 344, 352, 595, 691
NlaIV	GGNNCC	3 cut(s)	287, 485, 680
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	1 cut(s)	595
PciI	ACATGT	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	756
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	4 cut(s)	64, 506, 686, 698
PleI	GAGTC	3 cut(s)	8, 135, 206
PmaCI	CACGTG	1 cut(s)	48
PmlI	CACGTG	1 cut(s)	48
PpsI	GAGTC	3 cut(s)	8, 135, 206
Ppu21I	YACGTR	1 cut(s)	48
PscI	ACATGT	1 cut(s)	591
PspCI	CACGTG	1 cut(s)	48
PspN4I	GGNNCC	3 cut(s)	287, 485, 680
PstI	CTGCAG	1 cut(s)	698
PstNI	CAGNNNCTG	1 cut(s)	702
RsaI	GTAC	2 cut(s)	83, 485
RsaNI	GTAC	2 cut(s)	82, 484
RseI	CAYNNNNRTG	1 cut(s)	50
SacII	CCGCGG	1 cut(s)	685
SaqAI	TTAA	3 cut(s)	20, 380, 766
SatI	GCNGC	4 cut(s)	63, 505, 685, 697
Sau3AI	GATC	4 cut(s)	220, 229, 352, 415
SchI	GAGTC	3 cut(s)	8, 136, 206
ScrFI	CCNGG	2 cut(s)	557, 634
SduI	GDGCHC	2 cut(s)	394, 681
SetI	ASST	5 cut(s)	50, 210, 603, 715, 766
SfaNI	GCATC	3 cut(s)	114, 135, 637
SfcI	CTRYAG	1 cut(s)	694
Sfr303I	CCGCGG	1 cut(s)	685
SgrBI	CCGCGG	1 cut(s)	685
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	334, 466, 499
SsiI	CCGC	2 cut(s)	682, 684
SspMI	CTAG	1 cut(s)	710
StyD4I	CCNGG	2 cut(s)	555, 632
TaaI	ACNGT	2 cut(s)	309, 630
TaiI	ACGT	2 cut(s)	50, 766
TaqI	TCGA	2 cut(s)	394, 760
TasI	AATT	3 cut(s)	334, 466, 499
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	687
Tru1I	TTAA	3 cut(s)	20, 380, 766
Tru9I	TTAA	3 cut(s)	20, 380, 766
TscAI	CASTG	2 cut(s)	38, 707
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	3 cut(s)	62, 504, 696
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	47, 357
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	2 cut(s)	38, 707
Van91I	CCANNNNNTGG	1 cut(s)	462
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.