FvH4_6g27901

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
21479669 .. 21484671
5003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27901.t1

Sequence Viewer

Length: 1092 bp
ATGGCTAATTATTCCATTAGCGTAGTTCTTATGGTGCTCACTCTTCTGCACTACCATGTCCATGGAGATCATCAGCAACAGCATTCTGACGAGGAAAGAAGAGATGCTGGAAATGAAGGTTGTGATATATTCGGAGGAAGGTGGGTTCCCGATGAGTCGTATCCTCTCTACAGTTCATCACAATGCCCCTTCATAGAGAGAGAGTTCACTTGCATACAGAACGGCCGTCCTGACCAATTGTATCTCAAATTCCGGTGGCAGCCCACTGGTTGCAACTTAACAAGGTTTGACGGTGGAGATTTCTTGAAGAGATATAGAGGGAAGAGCTTCATGTTTGTTGGAGACTCATTGAGTTTGAACCAATGGCAGTCACTCACTTGCATGCTCCATTCAGTTGTTCCAGAGGCCAACTACACACTTGCTAGGGTGGGTGATCTATCCACATTCACCTTCCCGGAATACAGTGTAAAGGTGATGTTCTCTCGGAATGCATTTCTAGTTGATACAATAGCAACACCTGCTGGCCGAGTTCTTAAGCTCGACTCTATTCAAAGCGGGAAACTTTGGAAGGGAATCGACTACTTGATCTTCAACACATGGCATTGGTGGCTGCACACCGGAAGAAAGCAACCTTGGGATCTTATTCAAGAAGGAAACAGAACCTATAAAGACATGGATCGCTTGGTTGCGTATGAGAAGGGGCTCAATACATGGGCTAAATGGGTAGACACCAATGTAGACCAAACAAAAACCAGAGTCTTCTTCCAAGGAGTTTCCCCAGATCACAATAACGCAAGTGATTGGAGGGATCCGACAGCGAAAGCTTGCGAGGGACAAACAAAACCGGTGGCCGGGTCTCAGTATCCGGCAGGACCTCATCCAGCAGAGCAAGTAGTAGAAAGGGTGTTGCATTCCATGTCATTCCCAGTTTATTTGCTAAATGTGACAACCCTTTCCCAACTAAGGAAAGATGGCCATCCATCTGTGTACGGCCACGGTGGTCACAGGGACATGGATTGCAGCCATTGGTGTCTCGCTGGCGTTCCGGATGCTTGGAATGAACTCCTATATGTAGCTCTTATACAAAGCTAA

Protein Analysis

364

Amino Acids

41.55

Weight (kDa)

6.42

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 40 - 92 2.5e-24 PMR5 N terminal Domain
PC-Esterase PF13839 93 - 357 1.1e-93 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccI GTMKAC 2 cut(s) 726, 738
AccIII TCCGGA 1 cut(s) 1045
AciI CCGC 1 cut(s) 555
AclWI GGATC 4 cut(s) 645, 684, 803, 816
AcoI YGGCCR 5 cut(s) 223, 523, 849, 973, 991
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 1 cut(s) 989
AfiI CCNNNNNNNGG 2 cut(s) 851, 963
AflII CTTAAG 1 cut(s) 533
AgeI ACCGGT 1 cut(s) 844
AgsI TTSAA 5 cut(s) 307, 358, 551, 592, 647
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AloI GAACNNNNNNTCC 2 cut(s) 129, 161
AluBI AGCT 5 cut(s) 327, 538, 824, 1076, 1089
AluI AGCT 5 cut(s) 327, 538, 824, 1076, 1089
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 3 cut(s) 336, 861, 1037
AlwI GGATC 4 cut(s) 645, 684, 803, 816
Aor13HI TCCGGA 1 cut(s) 1045
AoxI GGCC 6 cut(s) 223, 405, 523, 849, 973, 991
ApeKI GCWGC 3 cut(s) 259, 610, 1020
ApoI RAATTY 1 cut(s) 248
AsiGI ACCGGT 1 cut(s) 844
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 1 cut(s) 872
AsuC2I CCSGG 2 cut(s) 455, 853
AsuHPI GGTGA 3 cut(s) 439, 443, 484
AvaII GGWCC 1 cut(s) 872
BalI TGGCCA 1 cut(s) 975
BamHI GGATCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 751
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 271, 597, 1032
BccI CCATC 3 cut(s) 965, 984, 988
BceAI ACGGC 3 cut(s) 210, 238, 1006
BciVI GTATCC 2 cut(s) 171, 873
BcnI CCSGG 2 cut(s) 455, 853
BcoDI GTCTC 3 cut(s) 336, 861, 1037
BfaI CTAG 2 cut(s) 423, 497
BfmI CTRYAG 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 526
BfuI GTATCC 2 cut(s) 171, 873
BisI GCNGC 3 cut(s) 260, 611, 1021
BlsI GCNGC 3 cut(s) 261, 612, 1022
Bme1390I CCNGG 2 cut(s) 455, 853
Bme18I GGWCC 1 cut(s) 872
BmgT120I GGNCC 1 cut(s) 872
BmiI GGNNCC 2 cut(s) 147, 810
BmrFI CCNGG 2 cut(s) 455, 853
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 2 cut(s) 94, 1039
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 751
BpuMI CCSGG 2 cut(s) 455, 853
BsaBI GATNNNNATC 1 cut(s) 975
BsaI GGTCTC 1 cut(s) 861
BsaJI CCNNGG 4 cut(s) 61, 632, 766, 994
BsaWI WCCGGW 4 cut(s) 252, 617, 844, 1045
Bsc4I CCNNNNNNNGG 2 cut(s) 851, 963
Bse118I RCCGGY 1 cut(s) 844
Bse1I ACTGG 2 cut(s) 271, 926
Bse8I GATNNNNATC 1 cut(s) 975
BseAI TCCGGA 1 cut(s) 1045
BseDI CCNNGG 4 cut(s) 61, 632, 766, 994
BseGI GGATG 3 cut(s) 877, 976, 1054
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 2 cut(s) 851, 963
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 2 cut(s) 271, 926
BseX3I CGGCCG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 271, 597, 1032
BsgI GTGCAG 2 cut(s) 32, 596
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 6 cut(s) 225, 407, 525, 851, 975, 993
BshTI ACCGGT 1 cut(s) 844
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 7 cut(s) 253, 455, 618, 845, 852, 866, 1046
BslFI GGGAC 2 cut(s) 846, 1022
BslI CCNNNNNNNGG 2 cut(s) 851, 963
BsmAI GTCTC 3 cut(s) 336, 861, 1037
BsmFI GGGAC 2 cut(s) 846, 1022
BsmI GAATGC 3 cut(s) 82, 493, 910
BsnI GGCC 6 cut(s) 225, 407, 525, 851, 975, 993
Bso31I GGTCTC 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 39, 705
Bsp13I TCCGGA 1 cut(s) 1045
Bsp143I GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 1 cut(s) 555
BspANI GGCC 6 cut(s) 225, 407, 525, 851, 975, 993
BspCNI CTCAG 1 cut(s) 871
BspEI TCCGGA 1 cut(s) 1045
BspLI GGNNCC 2 cut(s) 147, 810
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 4 cut(s) 645, 684, 803, 816
BspQI GCTCTTC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 861
BsrFI RCCGGY 1 cut(s) 844
BsrI ACTGG 2 cut(s) 271, 926
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 4 cut(s) 61, 632, 766, 994
BssMI GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
BssT1I CCWWGG 3 cut(s) 61, 632, 766
Bst4CI ACNGT 4 cut(s) 173, 293, 464, 998
Bst6I CTCTTC 4 cut(s) 48, 94, 302, 317
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 4 cut(s) 383, 523, 826, 1039
BstDEI CTNAG 2 cut(s) 858, 962
BstDSI CCRYGG 2 cut(s) 61, 994
BstF5I GGATG 3 cut(s) 877, 976, 1054
BstKTI GATC 7 cut(s) 70, 436, 588, 640, 679, 784, 811
BstMAI GTCTC 3 cut(s) 336, 861, 1037
BstMBI GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 518, 607
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 453, 851
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 271, 597, 1032
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 2 cut(s) 637, 808
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 2 cut(s) 637, 808
BstZI CGGCCG 1 cut(s) 223
BsuI GTATCC 2 cut(s) 171, 873
BsuRI GGCC 6 cut(s) 225, 407, 525, 851, 975, 993
BtgI CCRYGG 2 cut(s) 61, 994
BtsCI GGATG 3 cut(s) 877, 976, 1054
BtsIMutI CAGTG 2 cut(s) 264, 469
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 4 cut(s) 383, 523, 826, 1039
Cfr10I RCCGGY 1 cut(s) 844
Cfr13I GGNCC 1 cut(s) 872
Csp6I GTAC 1 cut(s) 988
CspAI ACCGGT 1 cut(s) 844
CspCI CAANNNNNGTGG 2 cut(s) 828, 863
CviAII CATG 9 cut(s) 56, 62, 331, 382, 597, 673, 711, 916, 1012
CviQI GTAC 1 cut(s) 988
DdeI CTNAG 2 cut(s) 858, 962
DpnI GATC 7 cut(s) 69, 435, 587, 639, 678, 783, 810
DpnII GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
EaeI YGGCCR 5 cut(s) 223, 523, 849, 973, 991
EagI CGGCCG 1 cut(s) 223
Eam1104I CTCTTC 4 cut(s) 48, 94, 302, 317
EarI CTCTTC 4 cut(s) 48, 94, 302, 317
EclXI CGGCCG 1 cut(s) 223
Eco130I CCWWGG 3 cut(s) 61, 632, 766
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 872
Eco52I CGGCCG 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 872
EcoT14I CCWWGG 3 cut(s) 61, 632, 766
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 3 cut(s) 61, 632, 766
FaeI CATG 9 cut(s) 59, 65, 334, 385, 600, 676, 714, 919, 1015
FaqI GGGAC 2 cut(s) 846, 1022
FatI CATG 9 cut(s) 55, 61, 330, 381, 596, 672, 710, 915, 1011
FauI CCCGC 1 cut(s) 548
FblI GTMKAC 2 cut(s) 726, 738
Fnu4HI GCNGC 3 cut(s) 260, 611, 1021
FokI GGATG 3 cut(s) 864, 963, 1061
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 3 cut(s) 260, 611, 1021
FspBI CTAG 2 cut(s) 423, 497
GluI GCNGC 3 cut(s) 260, 611, 1021
HaeIII GGCC 6 cut(s) 225, 407, 525, 851, 975, 993
HapII CCGG 7 cut(s) 253, 455, 618, 845, 852, 866, 1046
Hin1II CATG 9 cut(s) 59, 65, 334, 385, 600, 676, 714, 919, 1015
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 5 cut(s) 155, 344, 542, 573, 756
HpaII CCGG 7 cut(s) 253, 455, 618, 845, 852, 866, 1046
HphI GGTGA 3 cut(s) 439, 443, 484
Hpy166II GTNNAC 4 cut(s) 207, 727, 739, 988
Hpy188I TCNGA 4 cut(s) 88, 134, 486, 813
Hpy188III TCNNGA 6 cut(s) 149, 230, 304, 401, 647, 1046
Hpy8I GTNNAC 4 cut(s) 207, 727, 739, 988
HpyAV CCTTC 7 cut(s) 110, 132, 199, 460, 562, 644, 691
HpyCH4III ACNGT 4 cut(s) 173, 293, 464, 998
HpyCH4V TGCA 8 cut(s) 49, 213, 273, 381, 491, 613, 910, 1020
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 607
HpyF3I CTNAG 2 cut(s) 858, 962
Hsp92II CATG 9 cut(s) 59, 65, 334, 385, 600, 676, 714, 919, 1015
Kpn2I TCCGGA 1 cut(s) 1045
Kzo9I GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 3 cut(s) 271, 597, 1032
LweI GCATC 2 cut(s) 94, 1039
MaeI CTAG 2 cut(s) 423, 497
MaeIII GTNAC 3 cut(s) 369, 943, 1001
MalI GATC 7 cut(s) 69, 435, 587, 639, 678, 783, 810
MboI GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
MboII GAAGA 8 cut(s) 35, 111, 319, 334, 580, 633, 751, 754
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 2 cut(s) 637, 808
MhlI GDGCHC 2 cut(s) 39, 705
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 3 cut(s) 7, 236, 248
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 4 cut(s) 164, 338, 536, 765
MmeI TCCRAC 2 cut(s) 319, 836
MnlI CCTC 8 cut(s) 85, 128, 174, 311, 397, 798, 823, 885
Mox20I TGGCCA 1 cut(s) 975
Mph1103I ATGCAT 1 cut(s) 493
MroI TCCGGA 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 975
MseI TTAA 2 cut(s) 278, 534
MslI CAYNNNNRTG 4 cut(s) 54, 60, 181, 380
Msp20I TGGCCA 1 cut(s) 975
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 7 cut(s) 253, 455, 618, 845, 852, 866, 1046
MspR9I CCNGG 2 cut(s) 455, 853
MunI CAATTG 1 cut(s) 236
Mva1269I GAATGC 3 cut(s) 82, 493, 910
MwoI GCNNNNNNNGC 2 cut(s) 518, 607
NciI CCSGG 2 cut(s) 455, 853
NcoI CCATGG 1 cut(s) 61
NdeII GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
NlaIII CATG 9 cut(s) 59, 65, 334, 385, 600, 676, 714, 919, 1015
NlaIV GGNNCC 2 cut(s) 147, 810
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 3 cut(s) 369, 943, 1001
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 385
PaeI GCATGC 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 317
PctI GAATGC 3 cut(s) 82, 493, 910
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 573
PfoI TCCNGGA 1 cut(s) 453
PinAI ACCGGT 1 cut(s) 844
PkrI GCNGC 3 cut(s) 261, 612, 1022
PleI GAGTC 4 cut(s) 163, 338, 536, 764
PpsI GAGTC 4 cut(s) 163, 338, 536, 764
PpuMI RGGWCCY 1 cut(s) 872
Psp5II RGGWCCY 1 cut(s) 872
PspN4I GGNNCC 2 cut(s) 147, 810
PspPI GGNCC 1 cut(s) 872
PspPPI RGGWCCY 1 cut(s) 872
PsuI RGATCY 2 cut(s) 637, 808
RsaI GTAC 1 cut(s) 989
RsaNI GTAC 1 cut(s) 988
RseI CAYNNNNRTG 4 cut(s) 54, 60, 181, 380
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 2 cut(s) 278, 534
SatI GCNGC 3 cut(s) 260, 611, 1021
Sau3AI GATC 7 cut(s) 67, 433, 585, 637, 676, 781, 808
Sau96I GGNCC 1 cut(s) 872
SchI GAGTC 4 cut(s) 164, 338, 536, 765
ScrFI CCNGG 2 cut(s) 455, 853
SduI GDGCHC 2 cut(s) 39, 705
SfaNI GCATC 2 cut(s) 94, 1039
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 1 cut(s) 872
SmiMI CAYNNNNRTG 4 cut(s) 54, 60, 181, 380
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 385
Sse9I AATT 3 cut(s) 7, 236, 248
SsiI CCGC 1 cut(s) 555
SspMI CTAG 2 cut(s) 423, 497
StyD4I CCNGG 2 cut(s) 453, 851
StyI CCWWGG 3 cut(s) 61, 632, 766
TaaI ACNGT 4 cut(s) 173, 293, 464, 998
TaqI TCGA 2 cut(s) 540, 576
TasI AATT 3 cut(s) 7, 236, 248
TfiI GAWTC 1 cut(s) 573
Tru1I TTAA 2 cut(s) 278, 534
Tru9I TTAA 2 cut(s) 278, 534
TscAI CASTG 2 cut(s) 271, 469
TseFI GTSAC 3 cut(s) 369, 943, 1001
TseI GCWGC 3 cut(s) 259, 610, 1020
Tsp45I GTSAC 3 cut(s) 369, 943, 1001
TspDTI ATGAA 5 cut(s) 129, 165, 181, 319, 1074
TspRI CASTG 2 cut(s) 271, 469
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 1 cut(s) 248
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 2 cut(s) 726, 738
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 423, 497
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.