Prupe.3G168700_v2.0.a1

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000737
Physical Location & Seq
Forward (+)
18761482 .. 18764783
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G168700.1

Sequence Viewer

Length: 1080 bp
ATGGGTGCACTGGGTTTGGGGATTGCCTTTGCACTTCTGGTGTTGCTACCAAGTTTAGAACACCAAGTGCACGGGAAGCAAAGCAATTACGAGTTGAAGAAGTGTGATATTTACCAAGGAAGATGGGTTTACGATGCTTCTTACCCTCTTTATGATTCAAGTCTCTGCAGCTTCATAGAGAATGCCTTCGCTTGCCAGAAGAATGGTCGAGCCGACGAACTCTATCTCAAATATAAATGGCAACCCTTTGCATGCAAGTTACCTAGGTTTGATGCGGAAGATTTCTTGGAGAGATTTAGAGATAAACGCATCATGTTTGTTGGAGACTCATTAAGTTTGAATCAATGGCAATCATTCACATGTATGCTACATGCAGCCTCGCCTGAATCTGAGTATAACTTTGAGAGAATAGGATCAACCTCTACATTCACATTCCAGAGTCACAATGTTTCTTTGATGCTTCAACGCAATGCCTTTCTTGTTGACATGGAACACAATAAATATGGGAGGGTTTTGAAGCTCAACTCGATCGACCACGAGGATGGCTTAGCCTGGAAGGAATTTGATGTATTGATCTTCAACACATGGCACTGGTGGCTCCATACGGGAAGAAAACAACCGTGGGAATTTATTCAAGATGGAAACACTTTACGTCAAGACATGGATCGCTTTGTTGCCTATGAGAAAGCCTTAAGAACTTGGGCTCGGTGGGTGGACAAAAATGTTGATCCTACTAAAACCAAAGTCTTCTTCCAGAGCATTTCACCGACTCATTGGAACGCAAGTTTTTGGGGAAACCCAGAAGGAAGGAACTGCACAGCAGAAACAAGGCCACTGGCAGAGCAACCATACCCAAGAAGTCCACACCCAGCACAAGTGATTGTGGAGAGAGTTTTGAGAGGCATGTCAAAGCCAGTCAACTTGCTTAATGTGACAGCTCTGTCACGGCTAAGAAAAGACGGTCACCCTTCTATATATGGCAATGAAGGCCACCGTGGCATGGATTGTAGCCACTGGTGTCTTCCTGGAGTTCCTGACACTTGGAACCTGCTCCTATACACTGAGCTCATTCGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

360

Amino Acids

41.87

Weight (kDa)

7.65

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 940
Acc36I ACCTGC 1 cut(s) 1056
AciI CCGC 1 cut(s) 275
AclWI GGATC 3 cut(s) 421, 672, 722
AcsI RAATTY 2 cut(s) 560, 626
AdeI CACNNNGTG 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 1000
AflII CTTAAG 1 cut(s) 691
AflIII ACRYGT 1 cut(s) 359
AgsI TTSAA 7 cut(s) 97, 159, 340, 464, 517, 580, 635
AjnI CCWGG 2 cut(s) 551, 1024
AjuI GAANNNNNNNTTGG 2 cut(s) 734, 766
AluBI AGCT 4 cut(s) 171, 520, 938, 1066
AluI AGCT 4 cut(s) 171, 520, 938, 1066
Alw21I GWGCWC 3 cut(s) 10, 72, 1068
Alw26I GTCTC 2 cut(s) 167, 318
Alw44I GTGCAC 2 cut(s) 6, 68
AlwI GGATC 3 cut(s) 421, 672, 722
AoxI GGCC 2 cut(s) 830, 988
ApaLI GTGCAC 2 cut(s) 6, 68
ApeKI GCWGC 2 cut(s) 168, 374
ApoI RAATTY 2 cut(s) 560, 626
Asp700I GAANNNNTTC 2 cut(s) 185, 630
AspA2I CCTAGG 1 cut(s) 263
AsuHPI GGTGA 2 cut(s) 756, 956
AsuII TTCGAA 1 cut(s) 1072
AvrII CCTAGG 1 cut(s) 263
BaeGI GKGCMC 2 cut(s) 10, 72
BanII GRGCYC 2 cut(s) 706, 1068
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 739, 1013
Bbv12I GWGCWC 3 cut(s) 10, 72, 1068
BbvI GCAGC 2 cut(s) 180, 386
BccI CCATC 3 cut(s) 117, 536, 632
BceAI ACGGC 1 cut(s) 962
BciT130I CCWGG 2 cut(s) 553, 1026
BcoDI GTCTC 2 cut(s) 167, 318
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 166
BfrI CTTAAG 1 cut(s) 691
BfuAI ACCTGC 1 cut(s) 1056
BglI GCCNNNNNGGC 1 cut(s) 996
BisI GCNGC 2 cut(s) 169, 375
BlnI CCTAGG 1 cut(s) 263
BlpI GCTNAGC 1 cut(s) 547
BlsI GCNGC 2 cut(s) 170, 376
Bme1390I CCNGG 2 cut(s) 553, 1026
BmiI GGNNCC 2 cut(s) 599, 1046
BmrFI CCNGG 2 cut(s) 553, 1026
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 4 cut(s) 124, 262, 318, 447
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 739, 1013
BpmI CTGGAG 1 cut(s) 1047
Bpu1102I GCTNAGC 1 cut(s) 547
Bpu14I TTCGAA 1 cut(s) 1072
BsaJI CCNNGG 4 cut(s) 115, 263, 620, 994
Bsc4I CCNNNNNNNGG 1 cut(s) 1000
Bse1I ACTGG 5 cut(s) 15, 596, 840, 914, 1019
Bse3DI GCAATG 2 cut(s) 475, 988
BseBI CCWGG 2 cut(s) 553, 1026
BseDI CCNNGG 4 cut(s) 115, 263, 620, 994
BseGI GGATG 1 cut(s) 547
BseLI CCNNNNNNNGG 1 cut(s) 1000
BseMI GCAATG 2 cut(s) 475, 988
BseMII CTCAG 2 cut(s) 381, 1053
BseNI ACTGG 5 cut(s) 15, 596, 840, 914, 1019
BseSI GKGCMC 2 cut(s) 10, 72
BseXI GCAGC 2 cut(s) 180, 386
BseYI CCCAGC 1 cut(s) 868
BsgI GTGCAG 1 cut(s) 799
Bsh1285I CGRYCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 832, 990
BsiEI CGRYCG 1 cut(s) 531
BsiHKAI GWGCWC 3 cut(s) 10, 72, 1068
BslI CCNNNNNNNGG 1 cut(s) 1000
BsmAI GTCTC 2 cut(s) 167, 318
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 2 cut(s) 832, 990
Bsp119I TTCGAA 1 cut(s) 1072
Bsp1286I GDGCHC 4 cut(s) 10, 72, 706, 1068
Bsp143I GATC 5 cut(s) 413, 528, 573, 664, 727
Bsp1720I GCTNAGC 1 cut(s) 547
BspACI CCGC 1 cut(s) 275
BspANI GGCC 2 cut(s) 832, 990
BspCNI CTCAG 2 cut(s) 382, 1054
BspLI GGNNCC 2 cut(s) 599, 1046
BspMAI CTGCAG 1 cut(s) 170
BspMI ACCTGC 1 cut(s) 1056
BspPI GGATC 3 cut(s) 421, 672, 722
BspT104I TTCGAA 1 cut(s) 1072
BspTI CTTAAG 1 cut(s) 691
BsrDI GCAATG 2 cut(s) 475, 988
BsrI ACTGG 5 cut(s) 15, 596, 840, 914, 1019
BssECI CCNNGG 4 cut(s) 115, 263, 620, 994
BssMI GATC 5 cut(s) 413, 528, 573, 664, 727
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 115, 263
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 2 cut(s) 553, 1026
Bst4CI ACNGT 3 cut(s) 621, 962, 995
BstAFI CTTAAG 1 cut(s) 691
BstBI TTCGAA 1 cut(s) 1072
BstC8I GCNNGC 2 cut(s) 193, 253
BstDEI CTNAG 4 cut(s) 390, 547, 950, 1062
BstDSI CCRYGG 2 cut(s) 620, 994
BstEII GGTNACC 1 cut(s) 962
BstF5I GGATG 1 cut(s) 547
BstKTI GATC 5 cut(s) 416, 531, 576, 667, 730
BstMAI GTCTC 2 cut(s) 167, 318
BstMBI GATC 5 cut(s) 413, 528, 573, 664, 727
BstMCI CGRYCG 1 cut(s) 531
BstMWI GCNNNNNNNGC 4 cut(s) 76, 595, 987, 996
BstNI CCWGG 2 cut(s) 553, 1026
BstNSI RCATGY 4 cut(s) 255, 363, 374, 907
BstPI GGTNACC 1 cut(s) 962
BstSCI CCNGG 2 cut(s) 551, 1024
BstSFI CTRYAG 1 cut(s) 166
BstSLI GKGCMC 2 cut(s) 10, 72
BstV1I GCAGC 2 cut(s) 180, 386
BstV2I GAAGAC 2 cut(s) 739, 1013
BstXI CCANNNNNNTGG 2 cut(s) 203, 542
BsuRI GGCC 2 cut(s) 832, 990
BtgI CCRYGG 2 cut(s) 620, 994
BtsCI GGATG 1 cut(s) 547
BtsIMutI CAGTG 5 cut(s) 8, 589, 833, 1012, 1059
BveI ACCTGC 1 cut(s) 1056
Cac8I GCNNGC 2 cut(s) 193, 253
CviAII CATG 9 cut(s) 252, 313, 360, 371, 487, 585, 661, 904, 1000
DdeI CTNAG 4 cut(s) 390, 547, 950, 1062
DpnI GATC 5 cut(s) 415, 530, 575, 666, 729
DpnII GATC 5 cut(s) 413, 528, 573, 664, 727
DraIII CACNNNGTG 1 cut(s) 67
DrdI GACNNNNNNGTC 1 cut(s) 940
DseDI GACNNNNNNGTC 1 cut(s) 940
Ecl136II GAGCTC 1 cut(s) 1066
Eco130I CCWWGG 2 cut(s) 115, 263
Eco24I GRGCYC 2 cut(s) 706, 1068
Eco53kI GAGCTC 1 cut(s) 1066
Eco91I GGTNACC 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 1066
EcoO65I GGTNACC 1 cut(s) 962
EcoRII CCWGG 2 cut(s) 551, 1024
EcoT14I CCWWGG 2 cut(s) 115, 263
EcoT38I GRGCYC 2 cut(s) 706, 1068
ErhI CCWWGG 2 cut(s) 115, 263
FaeI CATG 9 cut(s) 255, 316, 363, 374, 490, 588, 664, 907, 1003
FatI CATG 9 cut(s) 251, 312, 359, 370, 486, 584, 660, 903, 999
Fnu4HI GCNGC 2 cut(s) 169, 375
FokI GGATG 1 cut(s) 554
FriOI GRGCYC 2 cut(s) 706, 1068
Fsp4HI GCNGC 2 cut(s) 169, 375
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 169, 375
GsaI CCCAGC 1 cut(s) 872
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 2 cut(s) 832, 990
Hin1II CATG 9 cut(s) 255, 316, 363, 374, 490, 588, 664, 907, 1003
HincII GTYRAC 2 cut(s) 484, 919
HindII GTYRAC 2 cut(s) 484, 919
HinfI GANTC 6 cut(s) 155, 326, 340, 386, 439, 769
HphI GGTGA 2 cut(s) 756, 956
Hpy166II GTNNAC 7 cut(s) 8, 70, 130, 484, 715, 863, 919
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 5 cut(s) 436, 635, 656, 754, 1034
Hpy8I GTNNAC 7 cut(s) 8, 70, 130, 484, 715, 863, 919
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 6 cut(s) 196, 550, 797, 801, 978, 980
HpyCH4III ACNGT 3 cut(s) 621, 962, 995
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 8 cut(s) 8, 32, 70, 168, 251, 255, 374, 816
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 595, 987, 996
HpyF3I CTNAG 4 cut(s) 390, 547, 950, 1062
HpySE526I ACGT 1 cut(s) 652
Hsp92II CATG 9 cut(s) 255, 316, 363, 374, 490, 588, 664, 907, 1003
Kzo9I GATC 5 cut(s) 413, 528, 573, 664, 727
LmnI GCTCC 2 cut(s) 603, 1056
Lsp1109I GCAGC 2 cut(s) 180, 386
LweI GCATC 4 cut(s) 124, 262, 318, 447
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 5 cut(s) 258, 440, 931, 942, 962
MalI GATC 5 cut(s) 415, 530, 575, 666, 729
MboI GATC 5 cut(s) 413, 528, 573, 664, 727
MboII GAAGA 9 cut(s) 109, 132, 211, 290, 568, 621, 739, 742, 1013
MhlI GDGCHC 4 cut(s) 10, 72, 706, 1068
MluCI AATT 3 cut(s) 85, 560, 626
MlyI GAGTC 3 cut(s) 320, 448, 763
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 6 cut(s) 156, 388, 430, 501, 532, 893
MroXI GAANNNNTTC 2 cut(s) 185, 630
MseI TTAA 3 cut(s) 332, 692, 927
MslI CAYNNNNRTG 3 cut(s) 358, 362, 540
MspCI CTTAAG 1 cut(s) 691
MspR9I CCNGG 2 cut(s) 553, 1026
Mva1269I GAATGC 1 cut(s) 187
MvaI CCWGG 2 cut(s) 553, 1026
MwoI GCNNNNNNNGC 4 cut(s) 76, 595, 987, 996
NdeII GATC 5 cut(s) 413, 528, 573, 664, 727
NlaIII CATG 9 cut(s) 255, 316, 363, 374, 490, 588, 664, 907, 1003
NlaIV GGNNCC 2 cut(s) 599, 1046
NmuCI GTSAC 4 cut(s) 440, 931, 942, 962
NspI RCATGY 4 cut(s) 255, 363, 374, 907
NspV TTCGAA 1 cut(s) 1072
PaeI GCATGC 1 cut(s) 255
PciI ACATGT 1 cut(s) 359
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 185, 630
PfeI GAWTC 3 cut(s) 155, 340, 386
PfoI TCCNGGA 1 cut(s) 1024
PkrI GCNGC 2 cut(s) 170, 376
Ple19I CGATCG 1 cut(s) 531
PleI GAGTC 3 cut(s) 320, 447, 763
PpsI GAGTC 3 cut(s) 320, 447, 763
PscI ACATGT 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 1068
Psp6I CCWGG 2 cut(s) 551, 1024
PspEI GGTNACC 1 cut(s) 962
PspFI CCCAGC 1 cut(s) 868
PspGI CCWGG 2 cut(s) 551, 1024
PspN4I GGNNCC 2 cut(s) 599, 1046
PstI CTGCAG 1 cut(s) 170
PvuI CGATCG 1 cut(s) 531
RseI CAYNNNNRTG 3 cut(s) 358, 362, 540
SacI GAGCTC 1 cut(s) 1068
SaqAI TTAA 3 cut(s) 332, 692, 927
SatI GCNGC 2 cut(s) 169, 375
Sau3AI GATC 5 cut(s) 413, 528, 573, 664, 727
SchI GAGTC 3 cut(s) 320, 448, 763
ScrFI CCNGG 2 cut(s) 553, 1026
SduI GDGCHC 4 cut(s) 10, 72, 706, 1068
SetI ASST 9 cut(s) 173, 265, 269, 422, 522, 655, 940, 1050, 1068
SfaNI GCATC 4 cut(s) 124, 262, 318, 447
SfcI CTRYAG 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 1072
SmiMI CAYNNNNRTG 3 cut(s) 358, 362, 540
SmlI CTYRAG 1 cut(s) 691
SmoI CTYRAG 1 cut(s) 691
SphI GCATGC 1 cut(s) 255
Sse9I AATT 3 cut(s) 85, 560, 626
SsiI CCGC 1 cut(s) 275
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 1068
StyD4I CCNGG 2 cut(s) 551, 1024
StyI CCWWGG 2 cut(s) 115, 263
TaaI ACNGT 3 cut(s) 621, 962, 995
TaiI ACGT 1 cut(s) 655
TaqI TCGA 4 cut(s) 208, 527, 531, 1072
TasI AATT 3 cut(s) 85, 560, 626
TfiI GAWTC 3 cut(s) 155, 340, 386
Tru1I TTAA 3 cut(s) 332, 692, 927
Tru9I TTAA 3 cut(s) 332, 692, 927
TscAI CASTG 5 cut(s) 15, 596, 840, 1019, 1066
TseFI GTSAC 4 cut(s) 440, 931, 942, 962
TseI GCWGC 2 cut(s) 168, 374
Tsp45I GTSAC 4 cut(s) 440, 931, 942, 962
TspDTI ATGAA 2 cut(s) 163, 999
TspRI CASTG 5 cut(s) 15, 596, 840, 1019, 1066
Vha464I CTTAAG 1 cut(s) 691
VneI GTGCAC 2 cut(s) 6, 68
XapI RAATTY 2 cut(s) 560, 626
XceI RCATGY 4 cut(s) 255, 363, 374, 907
XmaJI CCTAGG 1 cut(s) 263
XmnI GAANNNNTTC 2 cut(s) 185, 630
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.