Rmu_sc0005652.1_g000030

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005652.1
Physical Location & Seq
Reverse (-)
133299 .. 138610
5312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005652.1_g000030.1.cds

Sequence Viewer

Length: 1734 bp
atgctaaaccctagccgccttggttttgggtctctacatcggcgttctacgcctatcctaagcgatcttgccgtctctatcactcgaggctgctgtgcaacctttacaagtcgacaatggttgacgtgcaccctactgcatctgcagaattatgaatttggttctgccttacactactctgatgcgtcctcatgccggaatgcgttcttgcagaaagacggttttgatgatctgggttggaagagtcgtccagcaatggggtgcctcaaggtaactgcttggccaatatggctgaagcctgactctcaatcacccagacaacaccttgaagctcagaaggaatggaatgagatgctagttttgcgggggacaatgatctttggcaggccgtggaaggcggtcgaattgagttggacggtgaagcacgaaaggcaacagagaggagtgttgcgagtcttaggactccaatcttctgaatttgaggatgatcctgttgtgcgtccgtcggtggagttggagacaagaagctctgcgtatcagttgcagcgagtggcagtggggatgtctgcgatcacttgggtggcccaagtctcagtggaggccaaaccagatcaggtgcagctattagttgggtggcccagaccaacttggaggcccaaatctgttgggttacctggggtggattgggtgtccaaagaaattgggaaggatatgggggttattgcccagcaacaagtgcatgggattgggggatgtctcgatgtttctcgtgggaattgggttcatgatgattcataccctctttatgaagcttctagctgccccttcattgagaaggagtttgactgtgtaaagaatggtcgcccagacaaggactatctcaaatacagatggcagcctcttggctgcaacttaccaagattcaatggaattgatcttttgaggaggctaagagggaagagcatcatgtttattggggactcattgagtctgaaccaatggcaatcactcgcttgcttgcttcatacggctgttccaaatgccaaatacacattggtcaggtctggaggactctccgcattcacatttccggaatacaatattaaggtcttgttctcccgcaatgcctttctcgtggacattatcagcacaagtgctgggcgagtcctaaaacttgactcaatctcgcttgaaaaccagaaactgtggacaggagttgacgtcatgatcttcaacacatggcattggtggcttcacactggaagaaagcaagcatgggatcttattgagaaaggggggaaaataattgggaaggacatggataggttggttgcatatgagaaggctctcaacacttgggcaacatgggtagacacccatgtggaccctgcaaaaaccaaggtcttcttccagggtgtttccccagatcattctaattcatcagactgggatgatccaaaagcaggaagctgcaatgggcaaacagaaccacttcgaggtccaagctatcctcgtgtacatccagcagagaaagtagtagagaaagtattacgcgctatgtcaaagcccgtccaattgcttgatgtcacaaatctttcacaactaagaaaagatgggcacccctctttctatggccttggtgggcacagaacctcggactgcagccattggtgtttagctggagttcctgatacttggaacattcttctttatgcagctcttgcaggaagttaa

Protein Analysis

577

Amino Acids

64.96

Weight (kDa)

8.9

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1224
AccB1I GGYRCC 2 cut(s) 261, 1617
AccI GTMKAC 2 cut(s) 112, 1371
AccII CGCG 1 cut(s) 1554
AccIII TCCGGA 1 cut(s) 1090
AciI CCGC 5 cut(s) 16, 364, 398, 1077, 1120
AclWI GGATC 3 cut(s) 482, 1287, 1448
AcoI YGGCCR 1 cut(s) 281
AcsI RAATTY 2 cut(s) 155, 476
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 1 cut(s) 1221
AfaI GTAC 1 cut(s) 1518
AfiI CCNNNNNNNGG 5 cut(s) 195, 257, 871, 1463, 1496
AgsI TTSAA 4 cut(s) 329, 925, 1193, 1234
AjiI CACGTC 1 cut(s) 126
AjnI CCWGG 2 cut(s) 673, 1410
AjuI GAANNNNNNNTTGG 2 cut(s) 1391, 1423
AleI CACNNNNGTG 2 cut(s) 578, 1379
AluBI AGCT 9 cut(s) 332, 528, 622, 812, 819, 1470, 1506, 1679, 1718
AluI AGCT 9 cut(s) 332, 528, 622, 812, 819, 1470, 1506, 1679, 1718
Alw21I GWGCWC 1 cut(s) 131
Alw26I GTCTC 5 cut(s) 36, 79, 512, 595, 761
Alw44I GTGCAC 1 cut(s) 127
AlwI GGATC 3 cut(s) 482, 1287, 1448
AlwNI CAGNNNCTG 1 cut(s) 1204
Ama87I CYCGRG 1 cut(s) 84
Aor13HI TCCGGA 1 cut(s) 1090
AoxI GGCC 7 cut(s) 281, 386, 582, 600, 635, 653, 1633
ApaLI GTGCAC 1 cut(s) 127
ApeKI GCWGC 9 cut(s) 90, 544, 619, 819, 895, 906, 1470, 1662, 1715
ApoI RAATTY 2 cut(s) 155, 476
Asp700I GAANNNNTTC 2 cut(s) 203, 1491
AspLEI GCGC 1 cut(s) 1556
AspS9I GGNCC 5 cut(s) 583, 636, 654, 1384, 1499
AsuHPI GGTGA 2 cut(s) 303, 430
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 2 cut(s) 1384, 1499
BaeGI GKGCMC 3 cut(s) 131, 1620, 1647
BalI TGGCCA 1 cut(s) 283
BanI GGYRCC 2 cut(s) 261, 1617
BauI CACGAG 3 cut(s) 768, 1133, 1512
BbsI GAAGAC 1 cut(s) 1396
Bbv12I GWGCWC 1 cut(s) 131
BbvI GCAGC 9 cut(s) 77, 556, 631, 806, 893, 907, 1457, 1674, 1727
BccI CCATC 2 cut(s) 885, 1607
BceAI ACGGC 3 cut(s) 56, 373, 1044
BciT130I CCWGG 2 cut(s) 675, 1412
BcoDI GTCTC 5 cut(s) 36, 79, 512, 595, 761
BfaI CTAG 3 cut(s) 12, 356, 816
BfmI CTRYAG 2 cut(s) 143, 1660
BglI GCCNNNNNGGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 675, 1412
Bme18I GGWCC 2 cut(s) 1384, 1499
BmeT110I CYCGRG 1 cut(s) 84
BmgBI CACGTC 1 cut(s) 126
BmgT120I GGNCC 5 cut(s) 583, 636, 654, 1384, 1499
BmiI GGNNCC 3 cut(s) 263, 1386, 1619
BmrFI CCNGG 2 cut(s) 675, 1412
BmrI ACTGGG 1 cut(s) 1456
BmsI GCATC 4 cut(s) 148, 172, 342, 972
BmuI ACTGGG 1 cut(s) 1456
BpiI GAAGAC 1 cut(s) 1396
BpmI CTGGAG 2 cut(s) 1086, 1701
Bpu10I CCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 1221
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 7 cut(s) 19, 389, 674, 1398, 1411, 1636, 1653
BsaWI WCCGGW 1 cut(s) 1090
BsaXI ACNNNNNCTCC 2 cut(s) 1206, 1236
Bsc4I CCNNNNNNNGG 5 cut(s) 195, 257, 871, 1463, 1496
Bse1I ACTGG 2 cut(s) 1264, 1451
Bse3DI GCAATG 3 cut(s) 261, 1129, 1480
BseAI TCCGGA 1 cut(s) 1090
BseBI CCWGG 2 cut(s) 675, 1412
BseDI CCNNGG 7 cut(s) 19, 389, 674, 1398, 1411, 1636, 1653
BseGI GGATG 5 cut(s) 490, 567, 758, 1456, 1519
BseLI CCNNNNNNNGG 5 cut(s) 195, 257, 871, 1463, 1496
BseMI GCAATG 3 cut(s) 261, 1129, 1480
BseMII CTCAG 2 cut(s) 347, 606
BseNI ACTGG 2 cut(s) 1264, 1451
BseRI GAGGAG 2 cut(s) 456, 958
BseSI GKGCMC 3 cut(s) 131, 1620, 1647
BseXI GCAGC 9 cut(s) 77, 556, 631, 806, 893, 907, 1457, 1674, 1727
BseYI CCCAGC 2 cut(s) 726, 1157
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 1 cut(s) 1554
Bsh1285I CGRYCG 1 cut(s) 402
BshFI GGCC 7 cut(s) 283, 388, 584, 602, 637, 655, 1635
BshNI GGYRCC 2 cut(s) 261, 1617
BsiEI CGRYCG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 196, 1091
BslFI GGGAC 2 cut(s) 382, 992
BslI CCNNNNNNNGG 5 cut(s) 195, 257, 871, 1463, 1496
BsmAI GTCTC 5 cut(s) 36, 79, 512, 595, 761
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 2 cut(s) 382, 992
BsmI GAATGC 2 cut(s) 205, 1079
BsnI GGCC 7 cut(s) 283, 388, 584, 602, 637, 655, 1635
Bso31I GGTCTC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 131, 1620, 1647
Bsp13I TCCGGA 1 cut(s) 1090
Bsp1407I TGTACA 1 cut(s) 1516
BspACI CCGC 5 cut(s) 16, 364, 398, 1077, 1120
BspANI GGCC 7 cut(s) 283, 388, 584, 602, 637, 655, 1635
BspCNI CTCAG 2 cut(s) 346, 605
BspEI TCCGGA 1 cut(s) 1090
BspFNI CGCG 1 cut(s) 1554
BspHI TCATGA 2 cut(s) 784, 1224
BspLI GGNNCC 3 cut(s) 263, 1386, 1619
BspMAI CTGCAG 2 cut(s) 147, 1664
BspPI GGATC 3 cut(s) 482, 1287, 1448
BspQI GCTCTTC 1 cut(s) 953
BspT107I GGYRCC 2 cut(s) 261, 1617
BspTNI GGTCTC 1 cut(s) 36
BsrDI GCAATG 3 cut(s) 261, 1129, 1480
BsrGI TGTACA 1 cut(s) 1516
BsrI ACTGG 2 cut(s) 1264, 1451
BssECI CCNNGG 7 cut(s) 19, 389, 674, 1398, 1411, 1636, 1653
BssNI GRCGYC 1 cut(s) 1221
BssSI CACGAG 3 cut(s) 768, 1133, 1512
BssT1I CCWWGG 3 cut(s) 19, 1398, 1636
Bst2BI CACGAG 3 cut(s) 768, 1133, 1512
Bst2UI CCWGG 2 cut(s) 675, 1412
Bst4CI ACNGT 4 cut(s) 221, 418, 848, 1206
Bst6I CTCTTC 2 cut(s) 236, 953
BstACI GRCGYC 1 cut(s) 1221
BstAPI GCANNNNNTGC 2 cut(s) 736, 1721
BstAUI TGTACA 1 cut(s) 1516
BstC8I GCNNGC 4 cut(s) 386, 1015, 1019, 1272
BstDEI CTNAG 6 cut(s) 59, 333, 457, 592, 950, 1604
BstDSI CCRYGG 1 cut(s) 389
BstEII GGTNACC 1 cut(s) 669
BstF5I GGATG 5 cut(s) 490, 567, 758, 1456, 1519
BstFNI CGCG 1 cut(s) 1554
BstHHI GCGC 1 cut(s) 1556
BstMAI GTCTC 5 cut(s) 36, 79, 512, 595, 761
BstMCI CGRYCG 1 cut(s) 402
BstMWI GCNNNNNNNGC 7 cut(s) 49, 289, 361, 430, 736, 1249, 1721
BstNI CCWGG 2 cut(s) 675, 1412
BstPI GGTNACC 1 cut(s) 669
BstSCI CCNGG 2 cut(s) 673, 1410
BstSFI CTRYAG 2 cut(s) 143, 1660
BstSLI GKGCMC 3 cut(s) 131, 1620, 1647
BstUI CGCG 1 cut(s) 1554
BstV1I GCAGC 9 cut(s) 77, 556, 631, 806, 893, 907, 1457, 1674, 1727
BstV2I GAAGAC 1 cut(s) 1396
BstX2I RGATCY 1 cut(s) 1279
BstYI RGATCY 1 cut(s) 1279
BsuRI GGCC 7 cut(s) 283, 388, 584, 602, 637, 655, 1635
BtgI CCRYGG 1 cut(s) 389
BtrI CACGTC 1 cut(s) 126
BtsCI GGATG 5 cut(s) 490, 567, 758, 1456, 1519
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 3 cut(s) 561, 600, 1257
Cac8I GCNNGC 4 cut(s) 386, 1015, 1019, 1272
CaiI CAGNNNCTG 1 cut(s) 1204
CciI TCATGA 2 cut(s) 784, 1224
CfoI GCGC 1 cut(s) 1556
Cfr13I GGNCC 5 cut(s) 583, 636, 654, 1384, 1499
CseI GACGC 2 cut(s) 174, 488
Csp6I GTAC 1 cut(s) 1517
CviQI GTAC 1 cut(s) 1517
DdeI CTNAG 6 cut(s) 59, 333, 457, 592, 950, 1604
EaeI YGGCCR 1 cut(s) 281
Eam1104I CTCTTC 2 cut(s) 236, 953
EarI CTCTTC 2 cut(s) 236, 953
Eco130I CCWWGG 3 cut(s) 19, 1398, 1636
Eco31I GGTCTC 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 1384, 1499
Eco57I CTGAAG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 84
Eco91I GGTNACC 1 cut(s) 669
EcoO65I GGTNACC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 673, 1410
EcoT14I CCWWGG 3 cut(s) 19, 1398, 1636
ErhI CCWWGG 3 cut(s) 19, 1398, 1636
Esp3I CGTCTC 1 cut(s) 79
FalI AAGNNNNNCTT 2 cut(s) 1391, 1423
FaqI GGGAC 2 cut(s) 382, 992
FauI CCCGC 2 cut(s) 357, 1127
FauNDI CATATG 1 cut(s) 1336
FblI GTMKAC 2 cut(s) 112, 1371
FokI GGATG 5 cut(s) 497, 574, 765, 1463, 1506
FspBI CTAG 3 cut(s) 12, 356, 816
GlaI GCGC 1 cut(s) 1555
GsaI CCCAGC 2 cut(s) 730, 1161
GsuI CTGGAG 2 cut(s) 1086, 1701
HaeIII GGCC 7 cut(s) 283, 388, 584, 602, 637, 655, 1635
HapII CCGG 2 cut(s) 196, 1091
HgaI GACGC 2 cut(s) 174, 488
HhaI GCGC 1 cut(s) 1556
Hin1I GRCGYC 1 cut(s) 1221
Hin6I GCGC 1 cut(s) 1554
HinP1I GCGC 1 cut(s) 1554
HincII GTYRAC 3 cut(s) 113, 123, 1219
HindII GTYRAC 3 cut(s) 113, 123, 1219
HindIII AAGCTT 1 cut(s) 810
HpaII CCGG 2 cut(s) 196, 1091
HphI GGTGA 2 cut(s) 303, 430
Hpy166II GTNNAC 9 cut(s) 113, 123, 129, 1138, 1209, 1219, 1372, 1384, 1517
Hpy188I TCNGA 6 cut(s) 181, 336, 475, 993, 1444, 1657
Hpy188III TCNNGA 6 cut(s) 758, 785, 1065, 1091, 1225, 1688
Hpy8I GTNNAC 9 cut(s) 113, 123, 129, 1138, 1209, 1219, 1372, 1384, 1517
Hpy99I CGWCG 1 cut(s) 508
HpyAV CCTTC 7 cut(s) 331, 388, 700, 829, 835, 1306, 1336
HpyCH4III ACNGT 4 cut(s) 221, 418, 848, 1206
HpyCH4IV ACGT 2 cut(s) 125, 1221
HpyF10VI GCNNNNNNNGC 7 cut(s) 49, 289, 361, 430, 736, 1249, 1721
HpyF3I CTNAG 6 cut(s) 59, 333, 457, 592, 950, 1604
HpySE526I ACGT 2 cut(s) 125, 1221
Hsp92I GRCGYC 1 cut(s) 1221
HspAI GCGC 1 cut(s) 1554
Kpn2I TCCGGA 1 cut(s) 1090
LguI GCTCTTC 1 cut(s) 953
Lsp1109I GCAGC 9 cut(s) 77, 556, 631, 806, 893, 907, 1457, 1674, 1727
LweI GCATC 4 cut(s) 148, 172, 342, 972
MaeI CTAG 3 cut(s) 12, 356, 816
MaeII ACGT 2 cut(s) 125, 1221
MaeIII GTNAC 3 cut(s) 271, 669, 1585
MboII GAAGA 8 cut(s) 253, 462, 970, 1222, 1275, 1396, 1399, 1697
MfeI CAATTG 1 cut(s) 1574
MflI RGATCY 1 cut(s) 1279
MhlI GDGCHC 3 cut(s) 131, 1620, 1647
MlsI TGGCCA 1 cut(s) 283
MluNI TGGCCA 1 cut(s) 283
MlyI GAGTC 9 cut(s) 253, 296, 456, 462, 974, 997, 1065, 1172, 1173
MmeI TCCRAC 3 cut(s) 218, 392, 495
Mox20I TGGCCA 1 cut(s) 283
MroI TCCGGA 1 cut(s) 1090
MroXI GAANNNNTTC 2 cut(s) 203, 1491
MscI TGGCCA 1 cut(s) 283
MseI TTAA 2 cut(s) 1104, 1732
MslI CAYNNNNRTG 2 cut(s) 578, 1379
Msp20I TGGCCA 1 cut(s) 283
MspI CCGG 2 cut(s) 196, 1091
MspR9I CCNGG 2 cut(s) 675, 1412
MunI CAATTG 1 cut(s) 1574
Mva1269I GAATGC 2 cut(s) 205, 1079
MvaI CCWGG 2 cut(s) 675, 1412
MvnI CGCG 1 cut(s) 1554
MwoI GCNNNNNNNGC 7 cut(s) 49, 289, 361, 430, 736, 1249, 1721
NdeI CATATG 1 cut(s) 1336
NlaIV GGNNCC 3 cut(s) 263, 1386, 1619
NmuCI GTSAC 1 cut(s) 1585
OliI CACNNNNGTG 2 cut(s) 578, 1379
PaeR7I CTCGAG 1 cut(s) 84
PagI TCATGA 2 cut(s) 784, 1224
PciSI GCTCTTC 1 cut(s) 953
PctI GAATGC 2 cut(s) 205, 1079
PdmI GAANNNNTTC 2 cut(s) 203, 1491
PfeI GAWTC 2 cut(s) 791, 921
PleI GAGTC 9 cut(s) 252, 296, 456, 461, 974, 996, 1065, 1172, 1172
PpsI GAGTC 9 cut(s) 252, 296, 456, 461, 974, 996, 1065, 1172, 1172
Psp6I CCWGG 2 cut(s) 673, 1410
PspEI GGTNACC 1 cut(s) 669
PspFI CCCAGC 2 cut(s) 726, 1157
PspGI CCWGG 2 cut(s) 673, 1410
PspN4I GGNNCC 3 cut(s) 263, 1386, 1619
PspPI GGNCC 5 cut(s) 583, 636, 654, 1384, 1499
PspXI VCTCGAGB 1 cut(s) 84
PstI CTGCAG 2 cut(s) 147, 1664
PstNI CAGNNNCTG 1 cut(s) 1204
PsuI RGATCY 1 cut(s) 1279
RsaI GTAC 1 cut(s) 1518
RsaNI GTAC 1 cut(s) 1517
RseI CAYNNNNRTG 2 cut(s) 578, 1379
SalI GTCGAC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 953
SaqAI TTAA 2 cut(s) 1104, 1732
Sau96I GGNCC 5 cut(s) 583, 636, 654, 1384, 1499
SchI GAGTC 9 cut(s) 253, 296, 456, 462, 974, 997, 1065, 1172, 1173
ScrFI CCNGG 2 cut(s) 675, 1412
SduI GDGCHC 3 cut(s) 131, 1620, 1647
SfaNI GCATC 4 cut(s) 148, 172, 342, 972
SfcI CTRYAG 2 cut(s) 143, 1660
Sfr274I CTCGAG 1 cut(s) 84
SinI GGWCC 2 cut(s) 1384, 1499
SlaI CTCGAG 1 cut(s) 84
SmiMI CAYNNNNRTG 2 cut(s) 578, 1379
SmlI CTYRAG 2 cut(s) 84, 266
SmoI CTYRAG 2 cut(s) 84, 266
SsiI CCGC 5 cut(s) 16, 364, 398, 1077, 1120
SspI AATATT 1 cut(s) 1102
SspMI CTAG 3 cut(s) 12, 356, 816
StyD4I CCNGG 2 cut(s) 673, 1410
StyI CCWWGG 3 cut(s) 19, 1398, 1636
TaaI ACNGT 4 cut(s) 221, 418, 848, 1206
TaiI ACGT 2 cut(s) 128, 1224
TaqI TCGA 5 cut(s) 85, 112, 402, 759, 1495
TatI WGTACW 1 cut(s) 1516
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 791, 921
Tru1I TTAA 2 cut(s) 1104, 1732
Tru9I TTAA 2 cut(s) 1104, 1732
TscAI CASTG 3 cut(s) 561, 600, 1264
TseFI GTSAC 1 cut(s) 1585
TseI GCWGC 9 cut(s) 90, 544, 619, 819, 895, 906, 1470, 1662, 1715
Tsp45I GTSAC 1 cut(s) 1585
TspDTI ATGAA 7 cut(s) 168, 773, 783, 817, 822, 1013, 1428
TspGWI ACGGA 1 cut(s) 492
TspRI CASTG 3 cut(s) 561, 600, 1264
VneI GTGCAC 1 cut(s) 127
VpaK11BI GGWCC 2 cut(s) 1384, 1499
XapI RAATTY 2 cut(s) 155, 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XhoI CTCGAG 1 cut(s) 84
XmiI GTMKAC 2 cut(s) 112, 1371
XmnI GAANNNNTTC 2 cut(s) 203, 1491
XspI CTAG 3 cut(s) 12, 356, 816
ZraI GACGTC 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.