Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

21649756 .. 21650397

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGATAATTTTGCCATCGGCACTTTTCTTATGGTGCTCTCTCTTCTGCACCATCATGTACACGGAAGTCGACAGTACTCTACTGAAGGATGTGATCTTTTCCAAGGAAGATGGGTTTATGATGAATCATATCCTCTCTATACTTCATCACAATGCTCCTTCATAGAGAAGCAATTCGATTGCCTACAAAATGGTCGTTCCGACAAATTCTATCTCAAATTCCGATGGCAGCCCACTCACTGCAACTTAACAAGGTTCAACGGTGAAGATTTCTTGCAAATATTTAGAGGAAAAAGCTTCATGTTTGTTGGGGACTCATTGAGTTTGAACCAATGGCAATCACTCACTTGTATGCTTCATACATCCAATCCACAGACTCAATATAAACTCTACCGGACAGGAGGACTATCCACATTCGCCTTCCCTGTGAGACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

146

Amino Acids

17.02

Weight (kDa)

8.3

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	206, 218
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	60, 77
AgsI	TTSAA	2 cut(s)	259, 328
AluBI	AGCT	1 cut(s)	297
AluI	AGCT	1 cut(s)	297
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	206, 218
Asp700I	GAANNNNTTC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	4 cut(s)	23, 60, 105, 219
BcoDI	GTCTC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
BmcAI	AGTACT	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	424
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	95, 362
BseXI	GCAGC	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	424
BsmFI	GGGAC	1 cut(s)	326
Bso31I	GGTCTC	1 cut(s)	424
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	2 cut(s)	75, 263
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	95, 362
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	95, 362
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	59, 76
CviAII	CATG	2 cut(s)	56, 301
CviJI	RGCY	2 cut(s)	232, 297
CviKI_1	RGCY	2 cut(s)	232, 297
CviQI	GTAC	2 cut(s)	59, 76
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	2 cut(s)	59, 304
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	2 cut(s)	55, 300
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	2 cut(s)	102, 349
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HapII	CCGG	1 cut(s)	394
Hin1II	CATG	2 cut(s)	59, 304
HincII	GTYRAC	1 cut(s)	71
HindII	GTYRAC	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	3 cut(s)	125, 314, 376
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	61, 71
Hpy188I	TCNGA	2 cut(s)	202, 224
Hpy8I	GTNNAC	2 cut(s)	61, 71
HpyAV	CCTTC	3 cut(s)	80, 169, 430
HpyCH4III	ACNGT	2 cut(s)	75, 263
HpyCH4V	TGCA	3 cut(s)	49, 243, 277
Hsp92II	CATG	2 cut(s)	59, 304
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	2 cut(s)	384, 407
Lsp1109I	GCAGC	1 cut(s)	241
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	3 cut(s)	35, 120, 278
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	7, 173, 206, 218
MlyI	GAGTC	2 cut(s)	308, 370
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	3 cut(s)	144, 281, 395
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	3 cut(s)	54, 151, 350
MspI	CCGG	1 cut(s)	394
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	59, 304
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	125
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	2 cut(s)	308, 370
PpsI	GAGTC	2 cut(s)	308, 370
RsaI	GTAC	2 cut(s)	60, 77
RsaNI	GTAC	2 cut(s)	59, 76
RseI	CAYNNNNRTG	3 cut(s)	54, 151, 350
SalI	GTCGAC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	94
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	2 cut(s)	308, 370
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	2 cut(s)	257, 299
SgeI	CNNG	9 cut(s)	68, 74, 116, 264, 286, 313, 360, 406, 411
SmiMI	CAYNNNNRTG	3 cut(s)	54, 151, 350
Sse9I	AATT	4 cut(s)	7, 173, 206, 218
SspI	AATATT	1 cut(s)	282
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	75, 263
TaqI	TCGA	2 cut(s)	70, 177
TasI	AATT	4 cut(s)	7, 173, 206, 218
TatI	WGTACW	2 cut(s)	58, 75
TfiI	GAWTC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	1 cut(s)	245
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	5 cut(s)	135, 138, 151, 289, 347
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	245
XapI	RAATTY	2 cut(s)	206, 218
XmiI	GTMKAC	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	173
ZrmI	AGTACT	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.