Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

47537983 .. 47541426

Gene Structure 3444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGATGGTTTTGCAGTACTGGTAGTGCTGGTAGTGGTTTCTGTTGTGCAGCAACAAGTGCATGGGATTGGGGGATGTATCGATGTTTCTCGTGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAGCTGCCCCTTCATTGAGAAGGAGTTTGACTGTATAAAGAATGGTCGCCCAGACAAGGACTATCTCAAATACAGATGGCAGCCTCTTGGCTGCAACTTACCAAGATTCAATGGAATTGATCTTTTGAGGAGGCTAAGAGGGAAGAGCATCATGTTTATTGGGGACTCATTGAGTCTGAACCAATGGCAATCACTCGCTTGCTTGCTTCATACGGCTGTTCCAAATGCCAAATACACATTGGTCAGGTCTGGAGGACTCTCCGCATTCACATTTCCGGAATACAATATTAAGGTGTTGTTCTCCCGCAATGCCTTTCTCGTGGACATTATCAGCACAAGTGCTGGGCGAGTCCTAAAACTTGACTCAATCTCGCTTGAAAACCAGAAACTGTGGACAGGAGTTGACGTCATGATCTTCAACACATGGCATTGGTGGCTTCACACTGGAAGAAAGCAAGCATGGGATCTTATTGAGAAAGGGGGGAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCATATGAGAAGGCTCTTAACACTTGGGCAACATGGGTAGACACCCATGTGGACCCTGCAAAAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGATGATCCAAAAGCAGGAAGCTGCAATGGGCAAACAGAACCACTTCGAGGTCCAAGCTATCCTCGTGTACACCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCTATGTCAAAGCCCGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAACCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

351

Amino Acids

39.33

Weight (kDa)

8.34

Isoelectric Point (pI)

33.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	28 - 78	9e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	79 - 346	5.5e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	939
AccI	GTMKAC	1 cut(s)	693
AccII	CGCG	1 cut(s)	876
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	2 cut(s)	399, 442
AclWI	GGATC	2 cut(s)	609, 770
AcyI	GRCGYC	1 cut(s)	543
AfaI	GTAC	2 cut(s)	18, 840
AfiI	CCNNNNNNNGG	3 cut(s)	193, 785, 818
AgsI	TTSAA	3 cut(s)	247, 515, 556
AjnI	CCWGG	1 cut(s)	732
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AleI	CACNNNNGTG	1 cut(s)	701
AluBI	AGCT	6 cut(s)	134, 141, 792, 828, 1001, 1040
AluI	AGCT	6 cut(s)	134, 141, 792, 828, 1001, 1040
AlwI	GGATC	2 cut(s)	609, 770
AlwNI	CAGNNNCTG	1 cut(s)	526
Aor13HI	TCCGGA	1 cut(s)	412
AoxI	GGCC	1 cut(s)	955
ApeKI	GCWGC	7 cut(s)	49, 141, 217, 228, 792, 984, 1037
Asp700I	GAANNNNTTC	1 cut(s)	813
AspLEI	GCGC	1 cut(s)	878
AspS9I	GGNCC	2 cut(s)	706, 821
AvaII	GGWCC	2 cut(s)	706, 821
BaeGI	GKGCMC	2 cut(s)	942, 969
BanI	GGYRCC	1 cut(s)	939
BauI	CACGAG	3 cut(s)	90, 455, 834
BbsI	GAAGAC	1 cut(s)	718
BbvI	GCAGC	7 cut(s)	61, 128, 215, 229, 779, 996, 1049
BccI	CCATC	2 cut(s)	207, 929
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	1 cut(s)	734
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	982
BisI	GCNGC	7 cut(s)	50, 142, 218, 229, 793, 985, 1038
BlsI	GCNGC	7 cut(s)	51, 143, 219, 230, 794, 986, 1039
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	1 cut(s)	734
Bme18I	GGWCC	2 cut(s)	706, 821
BmgT120I	GGNCC	2 cut(s)	706, 821
BmiI	GGNNCC	2 cut(s)	708, 941
BmrFI	CCNGG	1 cut(s)	734
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	2 cut(s)	408, 1023
Bsa29I	ATCGAT	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	543
BsaJI	CCNNGG	4 cut(s)	720, 733, 958, 975
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 785, 818
Bse1I	ACTGG	3 cut(s)	24, 586, 773
Bse3DI	GCAATG	2 cut(s)	451, 802
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	734
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	4 cut(s)	720, 733, 958, 975
BseGI	GGATG	3 cut(s)	10, 80, 778
BseLI	CCNNNNNNNGG	3 cut(s)	193, 785, 818
BseMI	GCAATG	2 cut(s)	451, 802
BseNI	ACTGG	3 cut(s)	24, 586, 773
BseRI	GAGGAG	1 cut(s)	280
BseSI	GKGCMC	2 cut(s)	942, 969
BseXI	GCAGC	7 cut(s)	61, 128, 215, 229, 779, 996, 1049
BseYI	CCCAGC	2 cut(s)	479, 844
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	876
BshFI	GGCC	1 cut(s)	957
BshNI	GGYRCC	1 cut(s)	939
BshVI	ATCGAT	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	3 cut(s)	193, 785, 818
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	957
Bsp1286I	GDGCHC	2 cut(s)	942, 969
Bsp13I	TCCGGA	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	838
Bsp143I	GATC	5 cut(s)	256, 549, 601, 748, 775
BspACI	CCGC	2 cut(s)	399, 442
BspANI	GGCC	1 cut(s)	957
BspDI	ATCGAT	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	876
BspHI	TCATGA	2 cut(s)	106, 546
BspLI	GGNNCC	2 cut(s)	708, 941
BspMAI	CTGCAG	1 cut(s)	986
BspPI	GGATC	2 cut(s)	609, 770
BspQI	GCTCTTC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	939
BsrDI	GCAATG	2 cut(s)	451, 802
BsrGI	TGTACA	1 cut(s)	838
BsrI	ACTGG	3 cut(s)	24, 586, 773
BssECI	CCNNGG	4 cut(s)	720, 733, 958, 975
BssMI	GATC	5 cut(s)	256, 549, 601, 748, 775
BssNI	GRCGYC	1 cut(s)	543
BssSI	CACGAG	3 cut(s)	90, 455, 834
BssT1I	CCWWGG	2 cut(s)	720, 958
Bst2BI	CACGAG	3 cut(s)	90, 455, 834
Bst2UI	CCWGG	1 cut(s)	734
Bst4CI	ACNGT	2 cut(s)	170, 528
Bst6I	CTCTTC	1 cut(s)	275
BstACI	GRCGYC	1 cut(s)	543
BstAPI	GCANNNNNTGC	2 cut(s)	58, 1043
BstAUI	TGTACA	1 cut(s)	838
BstC8I	GCNNGC	3 cut(s)	337, 341, 594
BstDEI	CTNAG	2 cut(s)	272, 926
BstF5I	GGATG	3 cut(s)	10, 80, 778
BstFNI	CGCG	1 cut(s)	876
BstHHI	GCGC	1 cut(s)	878
BstKTI	GATC	5 cut(s)	259, 552, 604, 751, 778
BstMBI	GATC	5 cut(s)	256, 549, 601, 748, 775
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 571, 1043
BstNI	CCWGG	1 cut(s)	734
BstSCI	CCNGG	1 cut(s)	732
BstSFI	CTRYAG	1 cut(s)	982
BstSLI	GKGCMC	2 cut(s)	942, 969
BstUI	CGCG	1 cut(s)	876
BstV1I	GCAGC	7 cut(s)	61, 128, 215, 229, 779, 996, 1049
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	957
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	3 cut(s)	10, 80, 778
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	3 cut(s)	337, 341, 594
CaiI	CAGNNNCTG	1 cut(s)	526
CciI	TCATGA	2 cut(s)	106, 546
CfoI	GCGC	1 cut(s)	878
Cfr13I	GGNCC	2 cut(s)	706, 821
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	2 cut(s)	17, 839
CviAII	CATG	9 cut(s)	62, 107, 289, 547, 561, 597, 640, 687, 701
CviQI	GTAC	2 cut(s)	17, 839
DdeI	CTNAG	2 cut(s)	272, 926
DpnI	GATC	5 cut(s)	258, 551, 603, 750, 777
DpnII	GATC	5 cut(s)	256, 549, 601, 748, 775
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	720, 958
Eco47I	GGWCC	2 cut(s)	706, 821
EcoRII	CCWGG	1 cut(s)	732
EcoT14I	CCWWGG	2 cut(s)	720, 958
ErhI	CCWWGG	2 cut(s)	720, 958
FaeI	CATG	9 cut(s)	65, 110, 292, 550, 564, 600, 643, 690, 704
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	9 cut(s)	61, 106, 288, 546, 560, 596, 639, 686, 700
FauI	CCCGC	1 cut(s)	449
FauNDI	CATATG	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	693
Fnu4HI	GCNGC	7 cut(s)	50, 142, 218, 229, 793, 985, 1038
FokI	GGATG	3 cut(s)	17, 87, 785
Fsp4HI	GCNGC	7 cut(s)	50, 142, 218, 229, 793, 985, 1038
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	7 cut(s)	50, 142, 218, 229, 793, 985, 1038
GsaI	CCCAGC	2 cut(s)	483, 848
GsuI	CTGGAG	2 cut(s)	408, 1023
HaeIII	GGCC	1 cut(s)	957
HapII	CCGG	1 cut(s)	413
HhaI	GCGC	1 cut(s)	878
Hin1I	GRCGYC	1 cut(s)	543
Hin1II	CATG	9 cut(s)	65, 110, 292, 550, 564, 600, 643, 690, 704
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	7 cut(s)	113, 243, 302, 310, 393, 486, 500
HpaII	CCGG	1 cut(s)	413
Hpy166II	GTNNAC	7 cut(s)	460, 531, 541, 694, 706, 839, 841
Hpy188I	TCNGA	3 cut(s)	315, 766, 979
Hpy188III	TCNNGA	5 cut(s)	107, 387, 413, 547, 1010
Hpy8I	GTNNAC	7 cut(s)	460, 531, 541, 694, 706, 839, 841
HpyAV	CCTTC	4 cut(s)	151, 157, 628, 658
HpyCH4III	ACNGT	2 cut(s)	170, 528
HpyCH4IV	ACGT	1 cut(s)	543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 571, 1043
HpyF3I	CTNAG	2 cut(s)	272, 926
HpySE526I	ACGT	1 cut(s)	543
Hsp92I	GRCGYC	1 cut(s)	543
Hsp92II	CATG	9 cut(s)	65, 110, 292, 550, 564, 600, 643, 690, 704
HspAI	GCGC	1 cut(s)	876
Kpn2I	TCCGGA	1 cut(s)	412
Kzo9I	GATC	5 cut(s)	256, 549, 601, 748, 775
LguI	GCTCTTC	1 cut(s)	275
Lsp1109I	GCAGC	7 cut(s)	61, 128, 215, 229, 779, 996, 1049
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	5 cut(s)	258, 551, 603, 750, 777
MboI	GATC	5 cut(s)	256, 549, 601, 748, 775
MboII	GAAGA	6 cut(s)	292, 544, 597, 718, 721, 1019
MfeI	CAATTG	1 cut(s)	896
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	942, 969
MluCI	AATT	5 cut(s)	97, 252, 627, 757, 896
MlyI	GAGTC	5 cut(s)	296, 319, 387, 494, 495
MroI	TCCGGA	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	3 cut(s)	426, 672, 1054
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	1 cut(s)	413
MspR9I	CCNGG	1 cut(s)	734
MunI	CAATTG	1 cut(s)	896
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	734
MvnI	CGCG	1 cut(s)	876
MwoI	GCNNNNNNNGC	3 cut(s)	58, 571, 1043
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	5 cut(s)	256, 549, 601, 748, 775
NlaIII	CATG	9 cut(s)	65, 110, 292, 550, 564, 600, 643, 690, 704
NlaIV	GGNNCC	2 cut(s)	708, 941
NmuCI	GTSAC	1 cut(s)	907
OliI	CACNNNNGTG	1 cut(s)	701
PagI	TCATGA	2 cut(s)	106, 546
PciSI	GCTCTTC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	2 cut(s)	113, 243
PkrI	GCNGC	7 cut(s)	51, 143, 219, 230, 794, 986, 1039
PleI	GAGTC	5 cut(s)	296, 318, 387, 494, 494
PpsI	GAGTC	5 cut(s)	296, 318, 387, 494, 494
Psp6I	CCWGG	1 cut(s)	732
PspFI	CCCAGC	2 cut(s)	479, 844
PspGI	CCWGG	1 cut(s)	732
PspN4I	GGNNCC	2 cut(s)	708, 941
PspPI	GGNCC	2 cut(s)	706, 821
PstI	CTGCAG	1 cut(s)	986
PstNI	CAGNNNCTG	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	2 cut(s)	18, 840
RsaNI	GTAC	2 cut(s)	17, 839
RseI	CAYNNNNRTG	1 cut(s)	701
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	3 cut(s)	426, 672, 1054
SatI	GCNGC	7 cut(s)	50, 142, 218, 229, 793, 985, 1038
Sau3AI	GATC	5 cut(s)	256, 549, 601, 748, 775
Sau96I	GGNCC	2 cut(s)	706, 821
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	5 cut(s)	296, 319, 387, 494, 495
ScrFI	CCNGG	1 cut(s)	734
SduI	GDGCHC	2 cut(s)	942, 969
SfaNI	GCATC	1 cut(s)	294
SfcI	CTRYAG	1 cut(s)	982
SinI	GGWCC	2 cut(s)	706, 821
SmiMI	CAYNNNNRTG	1 cut(s)	701
Sse9I	AATT	5 cut(s)	97, 252, 627, 757, 896
SsiI	CCGC	2 cut(s)	399, 442
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	732
StyI	CCWWGG	2 cut(s)	720, 958
TaaI	ACNGT	2 cut(s)	170, 528
TaiI	ACGT	1 cut(s)	546
TaqI	TCGA	2 cut(s)	81, 817
TasI	AATT	5 cut(s)	97, 252, 627, 757, 896
TatI	WGTACW	2 cut(s)	16, 838
TfiI	GAWTC	2 cut(s)	113, 243
Tru1I	TTAA	3 cut(s)	426, 672, 1054
Tru9I	TTAA	3 cut(s)	426, 672, 1054
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	907
TseI	GCWGC	7 cut(s)	49, 141, 217, 228, 792, 984, 1037
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	6 cut(s)	95, 105, 139, 144, 335, 750
TspRI	CASTG	1 cut(s)	586
VpaK11BI	GGWCC	2 cut(s)	706, 821
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	693
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	544
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.