Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

38426660 .. 38433042

Gene Structure 6383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGATGGTTTTGCAGTACTGGTAGTGGTTTCTGTTTTGCAGCAACAAGTGCATGGGGTTGGGGGTTGTGATGTTTCTCGGGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAACTGCCCATTCATTGAGAAGGAGTTCGACTGTGTAAAGAATGGTCGCCGAGACAAGGACTATCTCAAATACAGATGGCAGCCACTTGGCTGTAACTTACCAAGATTCAATGGAATTGATCTTTTGAGGAGGCTAAGAGGGAAGAGCATCATGTTTATTGGGGACTCATTGAGTCTGAGCCAATGGCAATCACTCATTTGCTTGCTTCATACGGCTGTTCCAACTGCCAAATACACATTGGTCAGGTCTGGAGGACTCTCCGCATTCACATTTCCGGAATACAATGTTAAGGTGTTGTTCTCCCGCAACGCCTTTCTCGTGGACATTATCAGCACAAGTGCTGGGCGAGTCCTAAAACTTGACTCAATCTCGCTTGAAAACCAGAAACTGTGGACAGGAGTTGACGTCATGATCTTCAACACATGGCATTGGTGGCTTCATACCGGAAGAAAGCAAGCATGGGATCTTATCGAAGAAGGGGGCAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCCTATGAGAAGGCTCTCAACACTTGGGCAACATGGGTAGACTCCCAAGTGGACCCTGCAAGAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGGTGATCCAAAAGCAGGAAGCTGCAATGGACAAACAGAACCACTTCCAGGTCCAACCTATCCTCATGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCCATGCCAAAGCCAGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAATATTCTTCTTTATGCTGGTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

347

Amino Acids

38.82

Weight (kDa)

7.63

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	22 - 74	2.6e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	75 - 342	5.8e-91	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	927
AccI	GTMKAC	1 cut(s)	681
AccII	CGCG	1 cut(s)	864
AccIII	TCCGGA	1 cut(s)	400
AciI	CCGC	2 cut(s)	387, 430
AclWI	GGATC	2 cut(s)	597, 758
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	2 cut(s)	18, 828
AfiI	CCNNNNNNNGG	3 cut(s)	181, 773, 806
AgsI	TTSAA	3 cut(s)	235, 503, 544
AjnI	CCWGG	2 cut(s)	720, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	701, 733
AluBI	AGCT	3 cut(s)	122, 780, 989
AluI	AGCT	3 cut(s)	122, 780, 989
Alw26I	GTCTC	1 cut(s)	171
AlwI	GGATC	2 cut(s)	597, 758
AlwNI	CAGNNNCTG	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	78
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	943
ApeKI	GCWGC	4 cut(s)	40, 205, 780, 972
Asp700I	GAANNNNTTC	2 cut(s)	149, 801
AspLEI	GCGC	1 cut(s)	866
AspS9I	GGNCC	2 cut(s)	694, 809
AsuHPI	GGTGA	1 cut(s)	773
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	2 cut(s)	694, 809
BaeGI	GKGCMC	2 cut(s)	930, 957
BanI	GGYRCC	1 cut(s)	927
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	706
BbvI	GCAGC	4 cut(s)	52, 217, 767, 984
BccI	CCATC	2 cut(s)	195, 917
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	722, 807
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	970
BisI	GCNGC	4 cut(s)	41, 206, 781, 973
BlsI	GCNGC	4 cut(s)	42, 207, 782, 974
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	722, 807
Bme18I	GGWCC	2 cut(s)	694, 809
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	694, 809
BmiI	GGNNCC	2 cut(s)	696, 929
BmrFI	CCNGG	2 cut(s)	722, 807
BmrI	ACTGGG	1 cut(s)	766
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	766
BpiI	GAAGAC	1 cut(s)	706
BpmI	CTGGAG	2 cut(s)	396, 1011
BsaHI	GRCGYC	1 cut(s)	531
BsaJI	CCNNGG	4 cut(s)	708, 721, 946, 963
BsaWI	WCCGGW	2 cut(s)	400, 569
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	3 cut(s)	181, 773, 806
Bse1I	ACTGG	3 cut(s)	24, 761, 878
Bse3DI	GCAATG	1 cut(s)	790
BseAI	TCCGGA	1 cut(s)	400
BseBI	CCWGG	2 cut(s)	722, 807
BseDI	CCNNGG	4 cut(s)	708, 721, 946, 963
BseGI	GGATG	2 cut(s)	10, 829
BseLI	CCNNNNNNNGG	3 cut(s)	181, 773, 806
BseMI	GCAATG	1 cut(s)	790
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	3 cut(s)	24, 761, 878
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	2 cut(s)	930, 957
BseXI	GCAGC	4 cut(s)	52, 217, 767, 984
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	864
BshFI	GGCC	1 cut(s)	945
BshNI	GGYRCC	1 cut(s)	927
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	2 cut(s)	401, 570
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	181, 773, 806
BsmAI	GTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	945
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	2 cut(s)	930, 957
Bsp13I	TCCGGA	1 cut(s)	400
Bsp1407I	TGTACA	1 cut(s)	826
Bsp143I	GATC	5 cut(s)	244, 537, 589, 736, 763
BspACI	CCGC	2 cut(s)	387, 430
BspANI	GGCC	1 cut(s)	945
BspCNI	CTCAG	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	400
BspFNI	CGCG	1 cut(s)	864
BspHI	TCATGA	2 cut(s)	94, 534
BspLI	GGNNCC	2 cut(s)	696, 929
BspMAI	CTGCAG	1 cut(s)	974
BspPI	GGATC	2 cut(s)	597, 758
BspQI	GCTCTTC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	927
BsrDI	GCAATG	1 cut(s)	790
BsrGI	TGTACA	1 cut(s)	826
BsrI	ACTGG	3 cut(s)	24, 761, 878
BssECI	CCNNGG	4 cut(s)	708, 721, 946, 963
BssMI	GATC	5 cut(s)	244, 537, 589, 736, 763
BssNI	GRCGYC	1 cut(s)	531
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	2 cut(s)	708, 946
Bst2BI	CACGAG	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	722, 807
Bst4CI	ACNGT	2 cut(s)	158, 516
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	531
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	826
BstC8I	GCNNGC	2 cut(s)	329, 582
BstDEI	CTNAG	3 cut(s)	260, 302, 914
BstF5I	GGATG	2 cut(s)	10, 829
BstFNI	CGCG	1 cut(s)	864
BstHHI	GCGC	1 cut(s)	866
BstKTI	GATC	5 cut(s)	247, 540, 592, 739, 766
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	5 cut(s)	244, 537, 589, 736, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 559, 1031
BstNI	CCWGG	2 cut(s)	722, 807
BstSCI	CCNGG	2 cut(s)	720, 805
BstSFI	CTRYAG	1 cut(s)	970
BstSLI	GKGCMC	2 cut(s)	930, 957
BstUI	CGCG	1 cut(s)	864
BstV1I	GCAGC	4 cut(s)	52, 217, 767, 984
BstV2I	GAAGAC	1 cut(s)	706
BstX2I	RGATCY	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	945
BtsCI	GGATG	2 cut(s)	10, 829
Cac8I	GCNNGC	2 cut(s)	329, 582
CaiI	CAGNNNCTG	1 cut(s)	514
CciI	TCATGA	2 cut(s)	94, 534
CfoI	GCGC	1 cut(s)	866
Cfr13I	GGNCC	2 cut(s)	694, 809
Csp6I	GTAC	2 cut(s)	17, 827
CviQI	GTAC	2 cut(s)	17, 827
DdeI	CTNAG	3 cut(s)	260, 302, 914
DpnI	GATC	5 cut(s)	246, 539, 591, 738, 765
DpnII	GATC	5 cut(s)	244, 537, 589, 736, 763
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	2 cut(s)	708, 946
Eco47I	GGWCC	2 cut(s)	694, 809
Eco88I	CYCGRG	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	720, 805
EcoT14I	CCWWGG	2 cut(s)	708, 946
ErhI	CCWWGG	2 cut(s)	708, 946
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	1 cut(s)	302
FauI	CCCGC	1 cut(s)	437
FblI	GTMKAC	1 cut(s)	681
Fnu4HI	GCNGC	4 cut(s)	41, 206, 781, 973
FokI	GGATG	2 cut(s)	17, 816
Fsp4HI	GCNGC	4 cut(s)	41, 206, 781, 973
GlaI	GCGC	1 cut(s)	865
GluI	GCNGC	4 cut(s)	41, 206, 781, 973
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	2 cut(s)	396, 1011
HaeIII	GGCC	1 cut(s)	945
HapII	CCGG	2 cut(s)	401, 570
HhaI	GCGC	1 cut(s)	866
Hin1I	GRCGYC	1 cut(s)	531
Hin6I	GCGC	1 cut(s)	864
HinP1I	GCGC	1 cut(s)	864
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	8 cut(s)	101, 231, 290, 298, 381, 474, 488, 683
HpaII	CCGG	2 cut(s)	401, 570
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	5 cut(s)	448, 519, 529, 682, 694
Hpy188I	TCNGA	3 cut(s)	303, 754, 967
Hpy188III	TCNNGA	5 cut(s)	95, 375, 401, 535, 998
Hpy8I	GTNNAC	5 cut(s)	448, 519, 529, 682, 694
HpyAV	CCTTC	4 cut(s)	139, 596, 616, 646
HpyCH4III	ACNGT	2 cut(s)	158, 516
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	7 cut(s)	14, 40, 52, 701, 783, 972, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 559, 1031
HpyF3I	CTNAG	3 cut(s)	260, 302, 914
HpySE526I	ACGT	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	531
HspAI	GCGC	1 cut(s)	864
Kpn2I	TCCGGA	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	244, 537, 589, 736, 763
LguI	GCTCTTC	1 cut(s)	263
Lsp1109I	GCAGC	4 cut(s)	52, 217, 767, 984
LweI	GCATC	1 cut(s)	282
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	2 cut(s)	218, 895
MalI	GATC	5 cut(s)	246, 539, 591, 738, 765
MboI	GATC	5 cut(s)	244, 537, 589, 736, 763
MboII	GAAGA	7 cut(s)	280, 532, 585, 611, 706, 709, 1007
MfeI	CAATTG	1 cut(s)	884
MflI	RGATCY	1 cut(s)	589
MhlI	GDGCHC	2 cut(s)	930, 957
MluCI	AATT	5 cut(s)	85, 240, 615, 745, 884
MlyI	GAGTC	6 cut(s)	284, 307, 375, 482, 483, 677
MmeI	TCCRAC	2 cut(s)	371, 836
MnlI	CCTC	8 cut(s)	120, 246, 249, 257, 371, 831, 943, 973
MroI	TCCGGA	1 cut(s)	400
MroXI	GAANNNNTTC	2 cut(s)	149, 801
MseI	TTAA	2 cut(s)	414, 1042
MspI	CCGG	2 cut(s)	401, 570
MspR9I	CCNGG	2 cut(s)	722, 807
MunI	CAATTG	1 cut(s)	884
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	722, 807
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	3 cut(s)	49, 559, 1031
NdeII	GATC	5 cut(s)	244, 537, 589, 736, 763
NlaIV	GGNNCC	2 cut(s)	696, 929
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	895
PagI	TCATGA	2 cut(s)	94, 534
PciSI	GCTCTTC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	1 cut(s)	389
PdmI	GAANNNNTTC	2 cut(s)	149, 801
PfeI	GAWTC	2 cut(s)	101, 231
PkrI	GCNGC	4 cut(s)	42, 207, 782, 974
PleI	GAGTC	6 cut(s)	284, 306, 375, 482, 482, 677
PpsI	GAGTC	6 cut(s)	284, 306, 375, 482, 482, 677
Psp6I	CCWGG	2 cut(s)	720, 805
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	2 cut(s)	720, 805
PspN4I	GGNNCC	2 cut(s)	696, 929
PspPI	GGNCC	2 cut(s)	694, 809
PstI	CTGCAG	1 cut(s)	974
PstNI	CAGNNNCTG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	589
RsaI	GTAC	2 cut(s)	18, 828
RsaNI	GTAC	2 cut(s)	17, 827
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	414, 1042
SatI	GCNGC	4 cut(s)	41, 206, 781, 973
Sau3AI	GATC	5 cut(s)	244, 537, 589, 736, 763
Sau96I	GGNCC	2 cut(s)	694, 809
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	6 cut(s)	284, 307, 375, 482, 483, 677
ScrFI	CCNGG	2 cut(s)	722, 807
SduI	GDGCHC	2 cut(s)	930, 957
SfaNI	GCATC	1 cut(s)	282
SfcI	CTRYAG	1 cut(s)	970
SinI	GGWCC	2 cut(s)	694, 809
Sse9I	AATT	5 cut(s)	85, 240, 615, 745, 884
SsiI	CCGC	2 cut(s)	387, 430
SspI	AATATT	1 cut(s)	1012
StyD4I	CCNGG	2 cut(s)	720, 805
StyI	CCWWGG	2 cut(s)	708, 946
TaaI	ACNGT	2 cut(s)	158, 516
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	153, 597
TasI	AATT	5 cut(s)	85, 240, 615, 745, 884
TatI	WGTACW	2 cut(s)	16, 826
TfiI	GAWTC	2 cut(s)	101, 231
Tru1I	TTAA	2 cut(s)	414, 1042
Tru9I	TTAA	2 cut(s)	414, 1042
TseFI	GTSAC	1 cut(s)	895
TseI	GCWGC	4 cut(s)	40, 205, 780, 972
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	7 cut(s)	83, 93, 127, 132, 323, 554, 738
VpaK11BI	GGWCC	2 cut(s)	694, 809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	681
XmnI	GAANNNNTTC	2 cut(s)	149, 801
ZraI	GACGTC	1 cut(s)	532
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.