Rh2BG492600

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000737
Physical Location & Seq
Forward (+)
69183769 .. 69186100
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG492600.1

Sequence Viewer

Length: 1074 bp
ATGGGTGCATTGGGAACTATTGCCATTGCACTTCTGGTGCTACCACTTCTACATGACCAAGTACATGGGAAGCATGCATACGAGAACTTGAACAAGTGTGATATTTACCAAGGAAGCTGGGTTTATGACGATTCCTATCCTCTTTATGATTCAAGTCTCTGCAACTTCATACAGAAGGAGTTCGAGTGCCAACAAAATGGGCGACCCGACAAACACTATCTCAAATATAGATGGCAACCCTCTTCATGCATGTTACCAAGGTTTGATGGTGAAGATTTATTGGAAAGATTGAGAAATAAGCGCATCATGTTTGTTGGAGACTCGTTAAGTTTGAACCAGTGGCAATCTCTCACATGTATGCTTCATGCAGCCTCACCACAATCTAAGTACACTATTGAAAGAACAGGAAGCATCTCTACAATGACATTCCTGAGTCACAATGCTTCTTTGATGCTTGCACGCAATGCACTTCTTGTTGACATTGTAGAAGAAAGACAGGGGAGGGTTTTGAAGCTGGACTCCATTGATCATAAGGATCAGAAAGCATGGAAAGACATTGATATATTGATTTTCAACTCATGGCATTGGTGGCTCCACACAGGAAGGAAACAACCGTGGGATTTTATTCAAGATGGAGACAATTTACATGAAGACATGGATCGCCTTGTTGCTTATGAGAAAGCCTTAAAAACTTGGGCTCGATGGGTGGACAAAAATGTTGATCCGACTAAAACCAAAGTCTTCTTTCAAGGGATTTCACCCACTCATTGGAATTCAAGTTATTGGGGGTACCCTGAAGGGAAGAATTGCAGCAGGGAAACACAACCACTAATAGTGCCACCATACCCAAGAAGCCGACACCCGGCAGAAGGGATTGTGGAAAAAGTATTGAGCGACATGTCAAAGCCGGTGGGTTTGCTCAATGTAACAGGACTGTCCCGGCTAAGGAAAGATGCACACCCGTCCATATATGGCAACGGAGGGCACCGCGGCATGGACTGCAGCCACTGGTGTCTAGCTGGAGTTCCTGATACTTGGAACAGGCTGTTATACGCTGAAGTCATTCGACGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

357

Amino Acids

41.31

Weight (kDa)

8.06

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 32 - 83 5.2e-23 PMR5 N terminal Domain
PC-Esterase PF13839 85 - 352 1.7e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 789
AccB1I GGYRCC 2 cut(s) 789, 984
AccB7I CCANNNNNTGG 1 cut(s) 768
AccII CGCG 1 cut(s) 990
AciI CCGC 2 cut(s) 988, 990
AclWI GGATC 3 cut(s) 543, 666, 716
AcsI RAATTY 1 cut(s) 772
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 3 cut(s) 63, 389, 791
AfiI CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
AflIII ACRYGT 2 cut(s) 353, 897
AgsI TTSAA 9 cut(s) 91, 153, 334, 398, 511, 574, 629, 749, 777
AluBI AGCT 3 cut(s) 117, 514, 1019
AluI AGCT 3 cut(s) 117, 514, 1019
Alw26I GTCTC 3 cut(s) 161, 312, 630
AlwI GGATC 3 cut(s) 543, 666, 716
AlwNI CAGNNNCTG 1 cut(s) 1008
ApeKI GCWGC 3 cut(s) 368, 810, 1002
ApoI RAATTY 1 cut(s) 772
Asp700I GAANNNNTTC 2 cut(s) 179, 1062
Asp718I GGTACC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 303
AsuC2I CCSGG 2 cut(s) 863, 940
AsuHPI GGTGA 3 cut(s) 281, 366, 750
BaeGI GKGCMC 1 cut(s) 987
BanI GGYRCC 2 cut(s) 789, 984
BanII GRGCYC 1 cut(s) 700
BarI GAAGNNNNNNTAC 4 cut(s) 62, 94, 400, 432
BbsI GAAGAC 2 cut(s) 657, 733
BbvI GCAGC 3 cut(s) 380, 822, 1014
BccI CCATC 4 cut(s) 225, 260, 626, 696
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 2 cut(s) 863, 940
BcoDI GTCTC 3 cut(s) 161, 312, 630
BfaI CTAG 1 cut(s) 1016
BfmI CTRYAG 1 cut(s) 1000
BisI GCNGC 4 cut(s) 369, 811, 991, 1003
BlsI GCNGC 4 cut(s) 370, 812, 992, 1004
Bme1390I CCNGG 2 cut(s) 863, 940
BmiI GGNNCC 3 cut(s) 593, 791, 986
BmrFI CCNGG 2 cut(s) 863, 940
BmsI GCATC 4 cut(s) 312, 420, 441, 943
BpiI GAAGAC 2 cut(s) 657, 733
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 944
BpuMI CCSGG 2 cut(s) 863, 940
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 4 cut(s) 109, 257, 614, 988
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 337, 1013
Bse3DI GCAATG 2 cut(s) 24, 469
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 109, 257, 614, 988
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
BseMI GCAATG 2 cut(s) 24, 469
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 337, 1013
BseSI GKGCMC 1 cut(s) 987
BseXI GCAGC 3 cut(s) 380, 822, 1014
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 990
BshNI GGYRCC 2 cut(s) 789, 984
BsiSI CCGG 3 cut(s) 863, 908, 940
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
BsmAI GTCTC 3 cut(s) 161, 312, 630
BsmFI GGGAC 1 cut(s) 922
Bsp1286I GDGCHC 2 cut(s) 700, 987
Bsp143I GATC 4 cut(s) 526, 535, 658, 721
BspACI CCGC 2 cut(s) 988, 990
BspCNI CTCAG 1 cut(s) 423
BspFNI CGCG 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 593, 791, 986
BspMAI CTGCAG 1 cut(s) 1004
BspPI GGATC 3 cut(s) 543, 666, 716
BspT107I GGYRCC 2 cut(s) 789, 984
BsrDI GCAATG 2 cut(s) 24, 469
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 2 cut(s) 337, 1013
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 109, 257, 614, 988
BssMI GATC 4 cut(s) 526, 535, 658, 721
BssT1I CCWWGG 2 cut(s) 109, 257
Bst4CI ACNGT 2 cut(s) 615, 936
Bst6I CTCTTC 1 cut(s) 247
BstAPI GCANNNNNTGC 2 cut(s) 464, 999
BstC8I GCNNGC 3 cut(s) 75, 456, 460
BstDEI CTNAG 3 cut(s) 384, 431, 944
BstDSI CCRYGG 2 cut(s) 614, 988
BstFNI CGCG 1 cut(s) 990
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 4 cut(s) 529, 538, 661, 724
BstMAI GTCTC 3 cut(s) 161, 312, 630
BstMBI GATC 4 cut(s) 526, 535, 658, 721
BstMWI GCNNNNNNNGC 3 cut(s) 464, 589, 999
BstNSI RCATGY 4 cut(s) 77, 253, 357, 901
BstSCI CCNGG 2 cut(s) 861, 938
BstSFI CTRYAG 1 cut(s) 1000
BstSLI GKGCMC 1 cut(s) 987
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 3 cut(s) 380, 822, 1014
BstV2I GAAGAC 2 cut(s) 657, 733
BstXI CCANNNNNNTGG 2 cut(s) 65, 197
BtgI CCRYGG 2 cut(s) 614, 988
BtsIMutI CAGTG 2 cut(s) 344, 1006
Cac8I GCNNGC 3 cut(s) 75, 456, 460
CaiI CAGNNNCTG 1 cut(s) 1008
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 907
Cfr42I CCGCGG 1 cut(s) 991
Csp6I GTAC 3 cut(s) 62, 388, 790
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviQI GTAC 3 cut(s) 62, 388, 790
DdeI CTNAG 3 cut(s) 384, 431, 944
DpnI GATC 4 cut(s) 528, 537, 660, 723
DpnII GATC 4 cut(s) 526, 535, 658, 721
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 109, 257
Eco24I GRGCYC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 816
EcoRI GAATTC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 109, 257
EcoT22I ATGCAT 2 cut(s) 79, 251
EcoT38I GRGCYC 1 cut(s) 700
ErhI CCWWGG 2 cut(s) 109, 257
FaqI GGGAC 1 cut(s) 922
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 4 cut(s) 369, 811, 991, 1003
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 4 cut(s) 369, 811, 991, 1003
FspBI CTAG 1 cut(s) 1016
GlaI GCGC 1 cut(s) 302
GluI GCNGC 4 cut(s) 369, 811, 991, 1003
GsaI CCCAGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 1041
HapII CCGG 3 cut(s) 863, 908, 940
HhaI GCGC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 5 cut(s) 131, 149, 320, 433, 518
HpaII CCGG 3 cut(s) 863, 908, 940
HphI GGTGA 3 cut(s) 281, 366, 750
Hpy166II GTNNAC 3 cut(s) 390, 478, 709
Hpy188I TCNGA 2 cut(s) 540, 726
Hpy188III TCNNGA 3 cut(s) 430, 629, 1028
Hpy8I GTNNAC 3 cut(s) 390, 478, 709
Hpy99I CGWCG 1 cut(s) 1071
HpyAV CCTTC 4 cut(s) 169, 597, 791, 863
HpyCH4III ACNGT 2 cut(s) 615, 936
HpyCH4IV ACGT 1 cut(s) 1069
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 589, 999
HpyF3I CTNAG 3 cut(s) 384, 431, 944
HpySE526I ACGT 1 cut(s) 1069
HspAI GCGC 1 cut(s) 301
KpnI GGTACC 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 526
KspI CCGCGG 1 cut(s) 991
Kzo9I GATC 4 cut(s) 526, 535, 658, 721
LmnI GCTCC 1 cut(s) 597
Lsp1109I GCAGC 3 cut(s) 380, 822, 1014
LweI GCATC 4 cut(s) 312, 420, 441, 943
MaeI CTAG 1 cut(s) 1016
MaeII ACGT 1 cut(s) 1069
MaeIII GTNAC 3 cut(s) 252, 434, 925
MalI GATC 4 cut(s) 528, 537, 660, 723
MboI GATC 4 cut(s) 526, 535, 658, 721
MboII GAAGA 6 cut(s) 234, 284, 500, 662, 733, 814
MhlI GDGCHC 2 cut(s) 700, 987
MluCI AATT 3 cut(s) 640, 772, 805
MlyI GAGTC 3 cut(s) 314, 442, 512
MmeI TCCRAC 2 cut(s) 295, 749
MnlI CCTC 5 cut(s) 150, 250, 382, 495, 974
Mph1103I ATGCAT 2 cut(s) 79, 251
MroXI GAANNNNTTC 2 cut(s) 179, 1062
MseI TTAA 3 cut(s) 326, 686, 1072
MslI CAYNNNNRTG 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 990
MspI CCGG 3 cut(s) 863, 908, 940
MspR9I CCNGG 2 cut(s) 863, 940
MvnI CGCG 1 cut(s) 990
MwoI GCNNNNNNNGC 3 cut(s) 464, 589, 999
NciI CCSGG 2 cut(s) 863, 940
NdeII GATC 4 cut(s) 526, 535, 658, 721
NlaIV GGNNCC 3 cut(s) 593, 791, 986
NmuCI GTSAC 1 cut(s) 434
NsiI ATGCAT 2 cut(s) 79, 251
NspI RCATGY 4 cut(s) 77, 253, 357, 901
PaeI GCATGC 1 cut(s) 77
PciI ACATGT 2 cut(s) 353, 897
PdmI GAANNNNTTC 2 cut(s) 179, 1062
PfeI GAWTC 2 cut(s) 131, 149
PflMI CCANNNNNTGG 1 cut(s) 768
PkrI GCNGC 4 cut(s) 370, 812, 992, 1004
PleI GAGTC 3 cut(s) 314, 441, 512
PpsI GAGTC 3 cut(s) 314, 441, 512
PscI ACATGT 2 cut(s) 353, 897
PspFI CCCAGC 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 593, 791, 986
PstI CTGCAG 1 cut(s) 1004
PstNI CAGNNNCTG 1 cut(s) 1008
RsaI GTAC 3 cut(s) 63, 389, 791
RsaNI GTAC 3 cut(s) 62, 388, 790
RseI CAYNNNNRTG 1 cut(s) 356
SacII CCGCGG 1 cut(s) 991
SaqAI TTAA 3 cut(s) 326, 686, 1072
SatI GCNGC 4 cut(s) 369, 811, 991, 1003
Sau3AI GATC 4 cut(s) 526, 535, 658, 721
SchI GAGTC 3 cut(s) 314, 442, 512
ScrFI CCNGG 2 cut(s) 863, 940
SduI GDGCHC 2 cut(s) 700, 987
SetI ASST 5 cut(s) 119, 263, 516, 1021, 1072
SfaNI GCATC 4 cut(s) 312, 420, 441, 943
SfcI CTRYAG 1 cut(s) 1000
Sfr303I CCGCGG 1 cut(s) 991
SgrBI CCGCGG 1 cut(s) 991
SmiMI CAYNNNNRTG 1 cut(s) 356
SphI GCATGC 1 cut(s) 77
Sse9I AATT 3 cut(s) 640, 772, 805
SsiI CCGC 2 cut(s) 988, 990
SspMI CTAG 1 cut(s) 1016
StyD4I CCNGG 2 cut(s) 861, 938
StyI CCWWGG 2 cut(s) 109, 257
TaaI ACNGT 2 cut(s) 615, 936
TaiI ACGT 1 cut(s) 1072
TaqI TCGA 3 cut(s) 183, 700, 1066
TasI AATT 3 cut(s) 640, 772, 805
TatI WGTACW 2 cut(s) 61, 387
TauI GCSGC 1 cut(s) 993
TfiI GAWTC 2 cut(s) 131, 149
Tru1I TTAA 3 cut(s) 326, 686, 1072
Tru9I TTAA 3 cut(s) 326, 686, 1072
TscAI CASTG 2 cut(s) 344, 1013
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 3 cut(s) 368, 810, 1002
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 4 cut(s) 157, 234, 353, 663
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 344, 1013
Van91I CCANNNNNTGG 1 cut(s) 768
XapI RAATTY 1 cut(s) 772
XceI RCATGY 4 cut(s) 77, 253, 357, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmnI GAANNNNTTC 2 cut(s) 179, 1062
XspI CTAG 1 cut(s) 1016
Zsp2I ATGCAT 2 cut(s) 79, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.