Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

53313211 .. 53317342

Gene Structure 4132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG374400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGATAGGTTGGTTGCATATGAGAAGGCTCTCAACACTTGGGCAACATGGGTAGACACCCATGTGGACCCTGAAAAAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGATGATCCAAAAGCAGGAAGCTGCAATGGGCAAACAGAACCACTTCGAGGTCCAAGCTATCCTCGTGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCTATGTCAAAGCCCGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAACCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

138

Amino Acids

15.27

Weight (kDa)

6.27

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 133	6.1e-46	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	237
AclWI	GGATC	1 cut(s)	131
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	146, 179
AjnI	CCWGG	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	153, 189, 362, 401
AluI	AGCT	4 cut(s)	153, 189, 362, 401
AlwI	GGATC	1 cut(s)	131
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	3 cut(s)	153, 345, 398
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	67, 182
AvaII	GGWCC	2 cut(s)	67, 182
BaeGI	GKGCMC	2 cut(s)	303, 330
BanI	GGYRCC	1 cut(s)	300
BauI	CACGAG	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	140, 357, 410
BccI	CCATC	1 cut(s)	290
BciT130I	CCWGG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	3 cut(s)	154, 346, 399
BlsI	GCNGC	3 cut(s)	155, 347, 400
Bme1390I	CCNGG	1 cut(s)	95
Bme18I	GGWCC	2 cut(s)	67, 182
BmgT120I	GGNCC	2 cut(s)	67, 182
BmiI	GGNNCC	2 cut(s)	69, 302
BmrFI	CCNGG	1 cut(s)	95
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	384
BsaJI	CCNNGG	4 cut(s)	81, 94, 319, 336
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 179
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	4 cut(s)	81, 94, 319, 336
BseGI	GGATG	2 cut(s)	139, 202
BseLI	CCNNNNNNNGG	2 cut(s)	146, 179
BseMI	GCAATG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	2 cut(s)	303, 330
BseXI	GCAGC	3 cut(s)	140, 357, 410
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	146, 179
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	303, 330
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	109, 136
BspANI	GGCC	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	2 cut(s)	69, 302
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	163
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	4 cut(s)	81, 94, 319, 336
BssMI	GATC	2 cut(s)	109, 136
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	2 cut(s)	81, 319
Bst2BI	CACGAG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	139, 202
BstFNI	CGCG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	2 cut(s)	112, 139
BstMBI	GATC	2 cut(s)	109, 136
BstMWI	GCNNNNNNNGC	1 cut(s)	404
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	1 cut(s)	93
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	2 cut(s)	303, 330
BstUI	CGCG	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	140, 357, 410
BstV2I	GAAGAC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	139, 202
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	67, 182
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	2 cut(s)	48, 62
CviJI	RGCY	8 cut(s)	29, 153, 189, 250, 318, 348, 362, 401
CviKI_1	RGCY	8 cut(s)	29, 153, 189, 250, 318, 348, 362, 401
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	2 cut(s)	111, 138
DpnII	GATC	2 cut(s)	109, 136
Eco130I	CCWWGG	2 cut(s)	81, 319
Eco47I	GGWCC	2 cut(s)	67, 182
EcoRII	CCWGG	1 cut(s)	93
EcoT14I	CCWWGG	2 cut(s)	81, 319
ErhI	CCWWGG	2 cut(s)	81, 319
FaeI	CATG	2 cut(s)	51, 65
FaiI	YATR	7 cut(s)	19, 21, 49, 63, 242, 315, 396
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	2 cut(s)	47, 61
FauNDI	CATATG	1 cut(s)	19
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	154, 346, 399
FokI	GGATG	2 cut(s)	146, 189
Fsp4HI	GCNGC	3 cut(s)	154, 346, 399
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	154, 346, 399
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	51, 65
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
Hpy166II	GTNNAC	3 cut(s)	55, 67, 200
Hpy188I	TCNGA	2 cut(s)	127, 340
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	55, 67, 200
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	5 cut(s)	17, 156, 345, 398, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	404
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	51, 65
HspAI	GCGC	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	109, 136
Lsp1109I	GCAGC	3 cut(s)	140, 357, 410
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	111, 138
MboI	GATC	2 cut(s)	109, 136
MboII	GAAGA	3 cut(s)	79, 82, 380
MfeI	CAATTG	1 cut(s)	257
MhlI	GDGCHC	2 cut(s)	303, 330
MluCI	AATT	2 cut(s)	118, 257
MnlI	CCTC	4 cut(s)	173, 204, 316, 346
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	404
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	2 cut(s)	109, 136
NlaIII	CATG	2 cut(s)	51, 65
NlaIV	GGNNCC	2 cut(s)	69, 302
NmuCI	GTSAC	1 cut(s)	268
OliI	CACNNNNGTG	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	155, 347, 400
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	69, 302
PspPI	GGNCC	2 cut(s)	67, 182
PstI	CTGCAG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	3 cut(s)	154, 346, 399
Sau3AI	GATC	2 cut(s)	109, 136
Sau96I	GGNCC	2 cut(s)	67, 182
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	2 cut(s)	303, 330
SetI	ASST	8 cut(s)	11, 87, 155, 184, 191, 338, 364, 403
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	67, 182
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	2 cut(s)	118, 257
StyD4I	CCNGG	1 cut(s)	93
StyI	CCWWGG	2 cut(s)	81, 319
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	118, 257
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	3 cut(s)	153, 345, 398
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	67, 182
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.