FvH4_4g19380

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
23042937 .. 23044004
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19380.t1

Sequence Viewer

Length: 1068 bp
ATGAAAACAACACTGGTTCTCTTGCTCTTTGTTGTTTCTGCACACCAAATACATAACACCACCGGCTGCGATGTTTCGAACGGGAGCTGGGTTTATGACGACTCATATCCTCTCTATAACGCATCCAGCTGCCCCTTCATATTGAAAGCCTTTGATTGTGTAGGCAATGGCCGCCCGGACAAAGACTATCTCAAATACAGATGGATACCCTCTGAGTGCAACTTACCGACTTTCAACGGCACTGATCTTCTTATGAGGTTCAAAGGGAAGAGCATCATGTTCGTCGGAGACTCGCTGAGTTCGAATCAATGGCAGTCACTAGCTTGCATGGTGTACACATCGACTAGTCCACTGCCCAAGTACACTTTGTTCAGGCAAGGCGAGCTCTCCACGTTCGTGTTCCCGGAGTACAATTTCCGGCTCTTGTTCTCCCGGAATCCGCTTATTGTGGACATTGTTAACACCAAAGCAGGTCGAGTCCTCAAACTCGACTCCATATCGCTCGAAAGCCAGCAGCTGTGGAAGGGAACCGATGTAGTGATATTCGACACGTGGCATTGGTGGCTTCACGTCGGGAGGAAGCAGCCGTGGGATGTAATTCAGGTGGGGAACCAGACCTACGAGGACATGGATCGGCTGGTGGGGTATGAAAAGGCCTTGAACACTTGGGCGACGTGGGTGGACTCGAACGTGAACCCTGCAAAAACCAAGGTCTTTTTCCAAGGTGTGTCCCCCGATCACCAAAACGCATCAGACTGGACGCTGAACCCTAATTCCGAAGCGATGAACTGCACTGCAGAATCCGAACCACTACTCCAAGCAGGTTCAGAATACCCTAGGGCACATCCGGCGGAGCAAGTAGCGGAGAAAGTACTAGGTAGCATGTCGAAGCCGGCGAGGTTGCTGAATGTGACGAGGCTTTCAGAGCTGAGAAAGGATGGACATCCCTCTGTGTATGGCCTTGGTGGGAGGAGAGGCTTGGACTGCACGCATTGGTGCTTATCTGGAGTTCCTGATACTTGGAATGTGCTTCTCTATGCTGCTCTTACTGAGAGTTATACGGATTAA

Protein Analysis

356

Amino Acids

40.15

Weight (kDa)

6.08

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 22 - 74 6.6e-23 PMR5 N terminal Domain
PC-Esterase PF13839 75 - 347 4.8e-85 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 461, 812
AciI CCGC 4 cut(s) 172, 440, 851, 863
AclWI GGATC 1 cut(s) 639
AcoI YGGCCR 1 cut(s) 169
AcvI CACGTG 1 cut(s) 552
AfaI GTAC 4 cut(s) 335, 362, 410, 873
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 4 cut(s) 145, 235, 262, 661
AhlI ACTAGT 1 cut(s) 344
AjiI CACGTC 2 cut(s) 571, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AleI CACNNNNGTG 1 cut(s) 395
AloI GAACNNNNNNTCC 4 cut(s) 758, 790, 798, 830
AluBI AGCT 6 cut(s) 87, 129, 323, 385, 517, 928
AluI AGCT 6 cut(s) 87, 129, 323, 385, 517, 928
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 1 cut(s) 639
AlwNI CAGNNNCTG 1 cut(s) 517
AoxI GGCC 3 cut(s) 169, 654, 958
ApeKI GCWGC 5 cut(s) 66, 129, 514, 583, 1040
AspA2I CCTAGG 1 cut(s) 836
AsuC2I CCSGG 3 cut(s) 176, 404, 433
AsuHPI GGTGA 1 cut(s) 731
AsuII TTCGAA 2 cut(s) 77, 302
AvrII CCTAGG 1 cut(s) 836
BaeGI GKGCMC 1 cut(s) 844
BanII GRGCYC 1 cut(s) 387
BbrPI CACGTG 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 5 cut(s) 53, 116, 526, 595, 1027
BccI CCATC 2 cut(s) 195, 932
BceAI ACGGC 2 cut(s) 253, 571
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciVI GTATCC 1 cut(s) 198
BcnI CCSGG 3 cut(s) 176, 404, 433
BcoDI GTCTC 1 cut(s) 282
BcuI ACTAGT 1 cut(s) 344
BfaI CTAG 4 cut(s) 320, 345, 837, 875
BfmI CTRYAG 1 cut(s) 795
BfuAI ACCTGC 2 cut(s) 461, 812
BfuI GTATCC 1 cut(s) 198
BisI GCNGC 6 cut(s) 67, 130, 172, 515, 584, 1041
BlnI CCTAGG 1 cut(s) 836
BlsI GCNGC 6 cut(s) 68, 131, 173, 516, 585, 1042
BmcAI AGTACT 1 cut(s) 873
Bme1390I CCNGG 3 cut(s) 176, 404, 433
BmgBI CACGTC 2 cut(s) 571, 675
BmiI GGNNCC 2 cut(s) 529, 611
BmrFI CCNGG 3 cut(s) 176, 404, 433
BmsI GCATC 3 cut(s) 131, 282, 758
BpmI CTGGAG 1 cut(s) 1026
Bpu14I TTCGAA 2 cut(s) 77, 302
BpuMI CCSGG 3 cut(s) 176, 404, 433
BsaAI YACGTR 1 cut(s) 552
BsaBI GATNNNNATC 1 cut(s) 942
BsaJI CCNNGG 5 cut(s) 587, 708, 721, 836, 961
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bse118I RCCGGY 2 cut(s) 62, 892
Bse1I ACTGG 2 cut(s) 18, 761
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 942
BseDI CCNNGG 5 cut(s) 587, 708, 721, 836, 961
BseGI GGATG 5 cut(s) 122, 598, 844, 943, 943
BseJI GATNNNNATC 1 cut(s) 942
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 4 cut(s) 204, 287, 920, 1041
BseNI ACTGG 2 cut(s) 18, 761
BseRI GAGGAG 1 cut(s) 985
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 5 cut(s) 53, 116, 526, 595, 1027
BseYI CCCAGC 1 cut(s) 87
BsgI GTGCAG 3 cut(s) 24, 775, 970
BshFI GGCC 3 cut(s) 171, 656, 960
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 7 cut(s) 63, 176, 404, 418, 433, 848, 893
BslFI GGGAC 1 cut(s) 715
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 715
BsnI GGCC 3 cut(s) 171, 656, 960
Bsp119I TTCGAA 2 cut(s) 77, 302
Bsp1286I GDGCHC 2 cut(s) 387, 844
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 3 cut(s) 244, 631, 736
BspACI CCGC 4 cut(s) 172, 440, 851, 863
BspANI GGCC 3 cut(s) 171, 656, 960
BspCNI CTCAG 4 cut(s) 205, 288, 921, 1042
BspLI GGNNCC 2 cut(s) 529, 611
BspMAI CTGCAG 1 cut(s) 799
BspMI ACCTGC 2 cut(s) 461, 812
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 2 cut(s) 77, 302
BsrDI GCAATG 1 cut(s) 172
BsrFI RCCGGY 2 cut(s) 62, 892
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 2 cut(s) 18, 761
BssAI RCCGGY 2 cut(s) 62, 892
BssECI CCNNGG 5 cut(s) 587, 708, 721, 836, 961
BssMI GATC 3 cut(s) 244, 631, 736
BssT1I CCWWGG 4 cut(s) 708, 721, 836, 961
Bst6I CTCTTC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 552
BstBI TTCGAA 2 cut(s) 77, 302
BstC8I GCNNGC 5 cut(s) 325, 383, 512, 894, 989
BstDEI CTNAG 4 cut(s) 213, 296, 929, 1050
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 5 cut(s) 122, 598, 844, 943, 943
BstKTI GATC 3 cut(s) 247, 634, 739
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 3 cut(s) 244, 631, 736
BstMWI GCNNNNNNNGC 6 cut(s) 171, 382, 562, 848, 925, 984
BstNSI RCATGY 1 cut(s) 886
BstSCI CCNGG 3 cut(s) 174, 402, 431
BstSFI CTRYAG 1 cut(s) 795
BstSLI GKGCMC 1 cut(s) 844
BstV1I GCAGC 5 cut(s) 53, 116, 526, 595, 1027
BsuI GTATCC 1 cut(s) 198
BsuRI GGCC 3 cut(s) 171, 656, 960
BtgI CCRYGG 1 cut(s) 587
BtgZI GCGATG 2 cut(s) 84, 797
BtrI CACGTC 2 cut(s) 571, 675
BtsCI GGATG 5 cut(s) 122, 598, 844, 943, 943
BtsI GCAGTG 2 cut(s) 350, 792
BtsIMutI CAGTG 4 cut(s) 11, 240, 350, 792
BveI ACCTGC 2 cut(s) 461, 812
Cac8I GCNNGC 5 cut(s) 325, 383, 512, 894, 989
CaiI CAGNNNCTG 1 cut(s) 517
Cfr10I RCCGGY 2 cut(s) 62, 892
CseI GACGC 1 cut(s) 769
Csp6I GTAC 4 cut(s) 334, 361, 409, 872
CviAII CATG 4 cut(s) 277, 328, 628, 883
CviQI GTAC 4 cut(s) 334, 361, 409, 872
DdeI CTNAG 4 cut(s) 213, 296, 929, 1050
DpnI GATC 3 cut(s) 246, 633, 738
DpnII GATC 3 cut(s) 244, 631, 736
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 866
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 4 cut(s) 708, 721, 836, 961
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 385
EcoT14I CCWWGG 4 cut(s) 708, 721, 836, 961
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 4 cut(s) 708, 721, 836, 961
FaeI CATG 4 cut(s) 280, 331, 631, 886
FaqI GGGAC 1 cut(s) 715
FatI CATG 4 cut(s) 276, 327, 627, 882
Fnu4HI GCNGC 6 cut(s) 67, 130, 172, 515, 584, 1041
FokI GGATG 5 cut(s) 109, 605, 831, 930, 950
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 6 cut(s) 67, 130, 172, 515, 584, 1041
FspBI CTAG 4 cut(s) 320, 345, 837, 875
GluI GCNGC 6 cut(s) 67, 130, 172, 515, 584, 1041
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 3 cut(s) 171, 656, 960
HapII CCGG 7 cut(s) 63, 176, 404, 418, 433, 848, 893
HgaI GACGC 1 cut(s) 769
Hin1II CATG 4 cut(s) 280, 331, 631, 886
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 8 cut(s) 101, 290, 304, 436, 477, 491, 683, 800
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 7 cut(s) 63, 176, 404, 418, 433, 848, 893
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 8 cut(s) 334, 336, 350, 363, 451, 460, 682, 694
Hpy188I TCNGA 7 cut(s) 214, 287, 754, 778, 805, 829, 925
Hpy188III TCNNGA 3 cut(s) 574, 1005, 1013
Hpy8I GTNNAC 8 cut(s) 334, 336, 350, 363, 451, 460, 682, 694
Hpy99I CGWCG 3 cut(s) 287, 575, 676
HpyAV CCTTC 2 cut(s) 145, 517
HpyCH4IV ACGT 5 cut(s) 392, 551, 570, 674, 690
HpyCH4V TGCA 7 cut(s) 41, 219, 327, 701, 792, 797, 987
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 382, 562, 848, 925, 984
HpyF3I CTNAG 4 cut(s) 213, 296, 929, 1050
HpySE526I ACGT 5 cut(s) 392, 551, 570, 674, 690
Hsp92II CATG 4 cut(s) 280, 331, 631, 886
KroI GCCGGC 1 cut(s) 892
KroNI GCCGGC 1 cut(s) 894
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 244, 631, 736
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 84, 853
Lsp1109I GCAGC 5 cut(s) 53, 116, 526, 595, 1027
LweI GCATC 3 cut(s) 131, 282, 758
MaeI CTAG 4 cut(s) 320, 345, 837, 875
MaeII ACGT 5 cut(s) 392, 551, 570, 674, 690
MaeIII GTNAC 2 cut(s) 315, 910
MalI GATC 3 cut(s) 246, 633, 738
MboI GATC 3 cut(s) 244, 631, 736
MboII GAAGA 2 cut(s) 239, 280
MhlI GDGCHC 2 cut(s) 387, 844
MluCI AATT 3 cut(s) 412, 597, 772
MlyI GAGTC 5 cut(s) 95, 284, 485, 486, 677
MmeI TCCRAC 1 cut(s) 265
MroNI GCCGGC 1 cut(s) 892
MseI TTAA 2 cut(s) 459, 1066
MslI CAYNNNNRTG 1 cut(s) 395
MspA1I CMGCKG 2 cut(s) 129, 517
MspI CCGG 7 cut(s) 63, 176, 404, 418, 433, 848, 893
MspR9I CCNGG 3 cut(s) 176, 404, 433
MwoI GCNNNNNNNGC 6 cut(s) 171, 382, 562, 848, 925, 984
NaeI GCCGGC 1 cut(s) 894
NciI CCSGG 3 cut(s) 176, 404, 433
NdeII GATC 3 cut(s) 244, 631, 736
NgoMIV GCCGGC 1 cut(s) 892
NlaIII CATG 4 cut(s) 280, 331, 631, 886
NlaIV GGNNCC 2 cut(s) 529, 611
NmuCI GTSAC 2 cut(s) 315, 910
NspI RCATGY 1 cut(s) 886
NspV TTCGAA 2 cut(s) 77, 302
OliI CACNNNNGTG 1 cut(s) 395
PceI AGGCCT 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 893
PdiI GCCGGC 1 cut(s) 894
PfeI GAWTC 3 cut(s) 304, 436, 800
PfoI TCCNGGA 2 cut(s) 402, 431
PkrI GCNGC 6 cut(s) 68, 131, 173, 516, 585, 1042
PleI GAGTC 5 cut(s) 95, 284, 485, 485, 677
PmaCI CACGTG 1 cut(s) 552
PmlI CACGTG 1 cut(s) 552
PpsI GAGTC 5 cut(s) 95, 284, 485, 485, 677
Ppu21I YACGTR 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 387
PspCI CACGTG 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 529, 611
PsrI GAACNNNNNNTAC 4 cut(s) 353, 385, 602, 634
PstI CTGCAG 1 cut(s) 799
PstNI CAGNNNCTG 1 cut(s) 517
PvuII CAGCTG 2 cut(s) 129, 517
RsaI GTAC 4 cut(s) 335, 362, 410, 873
RsaNI GTAC 4 cut(s) 334, 361, 409, 872
RseI CAYNNNNRTG 1 cut(s) 395
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 459, 1066
SatI GCNGC 6 cut(s) 67, 130, 172, 515, 584, 1041
Sau3AI GATC 3 cut(s) 244, 631, 736
ScaI AGTACT 1 cut(s) 873
SchI GAGTC 5 cut(s) 95, 284, 485, 486, 677
ScrFI CCNGG 3 cut(s) 176, 404, 433
SduI GDGCHC 2 cut(s) 387, 844
SfaNI GCATC 3 cut(s) 131, 282, 758
SfcI CTRYAG 1 cut(s) 795
SfuI TTCGAA 2 cut(s) 77, 302
SmiMI CAYNNNNRTG 1 cut(s) 395
SpeI ACTAGT 1 cut(s) 344
Sse9I AATT 3 cut(s) 412, 597, 772
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 4 cut(s) 172, 440, 851, 863
SspMI CTAG 4 cut(s) 320, 345, 837, 875
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 3 cut(s) 174, 402, 431
StyI CCWWGG 4 cut(s) 708, 721, 836, 961
TaiI ACGT 5 cut(s) 395, 554, 573, 677, 693
TaqI TCGA 9 cut(s) 77, 302, 341, 475, 489, 504, 546, 686, 887
TasI AATT 3 cut(s) 412, 597, 772
TatI WGTACW 4 cut(s) 333, 360, 408, 871
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 3 cut(s) 304, 436, 800
Tru1I TTAA 2 cut(s) 459, 1066
Tru9I TTAA 2 cut(s) 459, 1066
TscAI CASTG 4 cut(s) 18, 247, 357, 799
TseFI GTSAC 2 cut(s) 315, 910
TseI GCWGC 5 cut(s) 66, 129, 514, 583, 1040
Tsp45I GTSAC 2 cut(s) 315, 910
TspDTI ATGAA 4 cut(s) 17, 127, 663, 800
TspRI CASTG 4 cut(s) 18, 247, 357, 799
XceI RCATGY 1 cut(s) 886
XmaJI CCTAGG 1 cut(s) 836
XspI CTAG 4 cut(s) 320, 345, 837, 875
ZrmI AGTACT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.