Prupe.3G108200_v2.0.a1

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
8680775 .. 8685065
4291 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G108200.1

Sequence Viewer

Length: 1179 bp
ATGCATTTATCATATACATGCACATTATTGCATTATATTATATGTGCCTATATACCCTGTGAGTTGCACCAACCTTCTAATCTCTCTTTCTCTGATCTCATGGATGCTTTTGCAGTTGGTGCTACAACAATAGCACTGCTTGTGCTTTCTGTTCTGTATCAACCAGTTCATGGAGGGCTTGTAGGAAGTGATATCAACGGCTGTGATGTTTCTCATGGCAATTGGGTTTTTGATGATTCATATCCTCTTTATGCCGCGCCTAGCTGTCCCTTCATCGAAAACGAGTTTGATTGCATAAAGAACGGCCGCCCGGACAAAGGCTATCTAAAATATAGATGGCAGCCCTCTGCCTGCAACTTACCAAAATTCGATGGTAGTCGAATTTTGACGGAATTTAGAGGGAAAAGCATCATGTTCATTGGGGACTCGTTGAGCTTGAACCAATGGCAGTCACTTACTTGCATGCTTCATACAGCTGTTCCAAAGGCCAAGTACACATTGGTCAGGACTGGAGGGCTCTCCACATTCACGTTTCCGGAATACAATCTTAAAGTGTTGTTCTCCCGCAATGCCTTTATTGTGGATATCGTAGCCTCACCTGGTGGCCGAGTCCTCAAGCTTGACTCAATCTCAACTCAGGATGAGGAACTGTGGTTGGGAATCGACGTATTGATCTTCAACACGTGGCATTGGTGGCTTCACACCGGAAGAAAGCAACCATGGGATTTGATTCGAGTGGGGAAACAAACTTACACGGACATGAATCGCTTGGTTGCATATGAGAAGGCACTGAACACTTGGGCTAGTTGGGTAAATTCCAATGTGGATCCCAACAAAACCAAGGTCTTCTTCCAAGGTGTTTCTCCAGATCACAGCAATGCAACAGAGTGGAGTGATCCTAAGGCAATAAACTGCAATGCCCAATCAAAACCACTTCCAGGTCCAGATTATCCAGGAAAAGCACATCCAGCAGAGGAAGTAGTAGAGAAAGTGTTACGTAGCATGTCAAAGACAGTCCATTTGCTGGATGTTACAACTCTTTCACAACTTAGAAAAGATGGGCACCCATCTGTCTACGGCCTTGGCGGGCACCGGGGCATGGACTGCAGTCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAATGTTCTTCTTTATGCAGCTCTTACTCAAAATTAG

Protein Analysis

393

Amino Acids

43.89

Weight (kDa)

6.52

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1062, 1089
AccB7I CCANNNNNTGG 2 cut(s) 170, 1024
AccI GTMKAC 1 cut(s) 1074
AccII CGCG 1 cut(s) 257
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 4 cut(s) 255, 307, 565, 1086
AclWI GGATC 3 cut(s) 821, 834, 890
AcoI YGGCCR 2 cut(s) 304, 604
AcsI RAATTY 4 cut(s) 365, 381, 392, 814
AcvI CACGTG 1 cut(s) 684
AdeI CACNNNGTG 1 cut(s) 602
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 5 cut(s) 170, 317, 938, 1024, 1099
AflIII ACRYGT 1 cut(s) 681
AgsI TTSAA 2 cut(s) 439, 679
AjnI CCWGG 3 cut(s) 598, 937, 952
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AluBI AGCT 6 cut(s) 264, 435, 476, 619, 1124, 1163
AluI AGCT 6 cut(s) 264, 435, 476, 619, 1124, 1163
AlwI GGATC 3 cut(s) 821, 834, 890
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 4 cut(s) 304, 486, 604, 1078
ApeKI GCWGC 2 cut(s) 340, 1160
ApoI RAATTY 4 cut(s) 365, 381, 392, 814
ArsI GACNNNNNNTTYG 4 cut(s) 828, 860, 1003, 1035
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 941
AsuC2I CCSGG 2 cut(s) 311, 1094
AsuHPI GGTGA 1 cut(s) 588
AvaII GGWCC 1 cut(s) 941
AxyI CCTNAGG 1 cut(s) 900
BaeGI GKGCMC 2 cut(s) 1065, 1092
BamHI GGATCC 1 cut(s) 826
BanI GGYRCC 2 cut(s) 1062, 1089
BanII GRGCYC 1 cut(s) 519
BbrPI CACGTG 1 cut(s) 684
BbsI GAAGAC 1 cut(s) 838
BbvI GCAGC 2 cut(s) 352, 1172
BccI CCATC 4 cut(s) 330, 365, 1052, 1075
BceAI ACGGC 3 cut(s) 214, 319, 1093
BciT130I CCWGG 3 cut(s) 600, 939, 954
BcnI CCSGG 2 cut(s) 311, 1094
BfaI CTAG 2 cut(s) 261, 804
BfmI CTRYAG 1 cut(s) 1105
BisI GCNGC 4 cut(s) 255, 307, 341, 1161
BlsI GCNGC 4 cut(s) 256, 308, 342, 1162
Bme1390I CCNGG 5 cut(s) 311, 600, 939, 954, 1094
Bme18I GGWCC 1 cut(s) 941
BmgT120I GGNCC 1 cut(s) 941
BmiI GGNNCC 3 cut(s) 828, 1064, 1091
BmrFI CCNGG 5 cut(s) 311, 600, 939, 954, 1094
BmsI GCATC 2 cut(s) 94, 417
BoxI GACNNNNGTC 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 838
BpmI CTGGAG 3 cut(s) 531, 849, 1146
BpuEI CTTGAG 1 cut(s) 599
BpuMI CCSGG 2 cut(s) 311, 1094
BsaAI YACGTR 2 cut(s) 684, 998
BsaBI GATNNNNATC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 719, 840, 853, 1081, 1093
BsaWI WCCGGW 2 cut(s) 535, 704
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 5 cut(s) 170, 317, 938, 1024, 1099
Bse1I ACTGG 2 cut(s) 164, 514
Bse21I CCTNAGG 1 cut(s) 900
Bse3DI GCAATG 3 cut(s) 574, 883, 922
Bse8I GATNNNNATC 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 3 cut(s) 600, 939, 954
BseDI CCNNGG 5 cut(s) 719, 840, 853, 1081, 1093
BseGI GGATG 4 cut(s) 109, 646, 964, 1033
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 5 cut(s) 170, 317, 938, 1024, 1099
BseMI GCAATG 3 cut(s) 574, 883, 922
BseMII CTCAG 1 cut(s) 650
BseNI ACTGG 2 cut(s) 164, 514
BseSI GKGCMC 2 cut(s) 1065, 1092
BseX3I CGGCCG 1 cut(s) 304
BseXI GCAGC 2 cut(s) 352, 1172
Bsh1236I CGCG 1 cut(s) 257
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 4 cut(s) 306, 488, 606, 1080
BshNI GGYRCC 2 cut(s) 1062, 1089
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 4 cut(s) 311, 536, 705, 1093
BslFI GGGAC 2 cut(s) 252, 437
BslI CCNNNNNNNGG 5 cut(s) 170, 317, 938, 1024, 1099
BsmFI GGGAC 2 cut(s) 252, 437
BsnI GGCC 4 cut(s) 306, 488, 606, 1080
Bsp1286I GDGCHC 3 cut(s) 519, 1065, 1092
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 5 cut(s) 94, 672, 826, 868, 895
Bsp19I CCATGG 1 cut(s) 719
BspACI CCGC 4 cut(s) 255, 307, 565, 1086
BspANI GGCC 4 cut(s) 306, 488, 606, 1080
BspCNI CTCAG 1 cut(s) 649
BspEI TCCGGA 1 cut(s) 535
BspFNI CGCG 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 828, 1064, 1091
BspMAI CTGCAG 1 cut(s) 1109
BspPI GGATC 3 cut(s) 821, 834, 890
BspT107I GGYRCC 2 cut(s) 1062, 1089
BsrDI GCAATG 3 cut(s) 574, 883, 922
BsrI ACTGG 2 cut(s) 164, 514
BssECI CCNNGG 5 cut(s) 719, 840, 853, 1081, 1093
BssMI GATC 5 cut(s) 94, 672, 826, 868, 895
BssT1I CCWWGG 4 cut(s) 719, 840, 853, 1081
Bst2UI CCWGG 3 cut(s) 600, 939, 954
Bst4CI ACNGT 2 cut(s) 651, 1015
BstAPI GCANNNNNTGC 2 cut(s) 119, 1104
BstBAI YACGTR 2 cut(s) 684, 998
BstC8I GCNNGC 3 cut(s) 352, 464, 1088
BstDEI CTNAG 3 cut(s) 636, 900, 1049
BstDSI CCRYGG 1 cut(s) 719
BstF5I GGATG 4 cut(s) 109, 646, 964, 1033
BstFNI CGCG 1 cut(s) 257
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 5 cut(s) 97, 675, 829, 871, 898
BstMBI GATC 5 cut(s) 94, 672, 826, 868, 895
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 4 cut(s) 119, 694, 968, 1104
BstNI CCWGG 3 cut(s) 600, 939, 954
BstNSI RCATGY 3 cut(s) 21, 466, 1006
BstPAI GACNNNNGTC 1 cut(s) 1107
BstSCI CCNGG 5 cut(s) 309, 598, 937, 952, 1092
BstSFI CTRYAG 1 cut(s) 1105
BstSLI GKGCMC 2 cut(s) 1065, 1092
BstSNI TACGTA 1 cut(s) 998
BstUI CGCG 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 352, 1172
BstV2I GAAGAC 1 cut(s) 838
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BstZI CGGCCG 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 900
BsuRI GGCC 4 cut(s) 306, 488, 606, 1080
BtgI CCRYGG 1 cut(s) 719
BtsCI GGATG 4 cut(s) 109, 646, 964, 1033
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 2 cut(s) 134, 788
Cac8I GCNNGC 3 cut(s) 352, 464, 1088
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 941
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 1 cut(s) 493
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 3 cut(s) 636, 900, 1049
DpnI GATC 5 cut(s) 96, 674, 828, 870, 897
DpnII GATC 5 cut(s) 94, 672, 826, 868, 895
DraIII CACNNNGTG 1 cut(s) 602
EaeI YGGCCR 2 cut(s) 304, 604
EagI CGGCCG 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 304
Eco105I TACGTA 1 cut(s) 998
Eco130I CCWWGG 4 cut(s) 719, 840, 853, 1081
Eco24I GRGCYC 1 cut(s) 519
Eco32I GATATC 2 cut(s) 193, 586
Eco47I GGWCC 1 cut(s) 941
Eco52I CGGCCG 1 cut(s) 304
Eco72I CACGTG 1 cut(s) 684
Eco81I CCTNAGG 1 cut(s) 900
EcoRII CCWGG 3 cut(s) 598, 937, 952
EcoRV GATATC 2 cut(s) 193, 586
EcoT14I CCWWGG 4 cut(s) 719, 840, 853, 1081
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 519
ErhI CCWWGG 4 cut(s) 719, 840, 853, 1081
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FaqI GGGAC 2 cut(s) 252, 437
FauI CCCGC 2 cut(s) 572, 1079
FauNDI CATATG 1 cut(s) 778
FblI GTMKAC 1 cut(s) 1074
Fnu4HI GCNGC 4 cut(s) 255, 307, 341, 1161
FokI GGATG 4 cut(s) 116, 653, 951, 1040
FriOI GRGCYC 1 cut(s) 519
Fsp4HI GCNGC 4 cut(s) 255, 307, 341, 1161
FspBI CTAG 2 cut(s) 261, 804
GlaI GCGC 1 cut(s) 258
GluI GCNGC 4 cut(s) 255, 307, 341, 1161
GsuI CTGGAG 3 cut(s) 531, 849, 1146
HaeIII GGCC 4 cut(s) 306, 488, 606, 1080
HapII CCGG 4 cut(s) 311, 536, 705, 1093
HhaI GCGC 1 cut(s) 259
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 7 cut(s) 236, 425, 609, 623, 660, 730, 763
HpaII CCGG 4 cut(s) 311, 536, 705, 1093
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 2 cut(s) 495, 1075
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 6 cut(s) 505, 536, 638, 866, 944, 1133
Hpy8I GTNNAC 2 cut(s) 495, 1075
Hpy99I CGWCG 1 cut(s) 668
HpyAV CCTTC 3 cut(s) 84, 280, 778
HpyCH4III ACNGT 2 cut(s) 651, 1015
HpyCH4IV ACGT 4 cut(s) 530, 666, 683, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 694, 968, 1104
HpyF3I CTNAG 3 cut(s) 636, 900, 1049
HpySE526I ACGT 4 cut(s) 530, 666, 683, 997
HspAI GCGC 1 cut(s) 257
Kpn2I TCCGGA 1 cut(s) 535
Kzo9I GATC 5 cut(s) 94, 672, 826, 868, 895
Lsp1109I GCAGC 2 cut(s) 352, 1172
LweI GCATC 2 cut(s) 94, 417
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 2 cut(s) 261, 804
MaeII ACGT 4 cut(s) 530, 666, 683, 997
MaeIII GTNAC 3 cut(s) 450, 993, 1030
MalI GATC 5 cut(s) 96, 674, 828, 870, 897
MboI GATC 5 cut(s) 94, 672, 826, 868, 895
MboII GAAGA 5 cut(s) 667, 720, 838, 841, 1142
MfeI CAATTG 1 cut(s) 220
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 3 cut(s) 519, 1065, 1092
MluCI AATT 6 cut(s) 220, 365, 381, 392, 814, 1174
MlyI GAGTC 3 cut(s) 419, 617, 618
MnlI CCTC 9 cut(s) 167, 255, 355, 392, 506, 604, 623, 637, 967
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 535
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 3 cut(s) 16, 758, 876
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 4 cut(s) 311, 536, 705, 1093
MspR9I CCNGG 5 cut(s) 311, 600, 939, 954, 1094
MunI CAATTG 1 cut(s) 220
MvaI CCWGG 3 cut(s) 600, 939, 954
MvnI CGCG 1 cut(s) 257
MwoI GCNNNNNNNGC 4 cut(s) 119, 694, 968, 1104
NciI CCSGG 2 cut(s) 311, 1094
NcoI CCATGG 1 cut(s) 719
NdeI CATATG 1 cut(s) 778
NdeII GATC 5 cut(s) 94, 672, 826, 868, 895
NlaIV GGNNCC 3 cut(s) 828, 1064, 1091
NmeAIII GCCGAG 1 cut(s) 632
NmuCI GTSAC 1 cut(s) 450
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 21, 466, 1006
PaeI GCATGC 1 cut(s) 466
PfeI GAWTC 4 cut(s) 236, 660, 730, 763
PflMI CCANNNNNTGG 2 cut(s) 170, 1024
PfoI TCCNGGA 1 cut(s) 952
PkrI GCNGC 4 cut(s) 256, 308, 342, 1162
PleI GAGTC 3 cut(s) 419, 617, 617
PmaCI CACGTG 1 cut(s) 684
PmlI CACGTG 1 cut(s) 684
PpsI GAGTC 3 cut(s) 419, 617, 617
Ppu21I YACGTR 2 cut(s) 684, 998
PshAI GACNNNNGTC 1 cut(s) 1107
Psp6I CCWGG 3 cut(s) 598, 937, 952
PspCI CACGTG 1 cut(s) 684
PspGI CCWGG 3 cut(s) 598, 937, 952
PspN4I GGNNCC 3 cut(s) 828, 1064, 1091
PspPI GGNCC 1 cut(s) 941
PstI CTGCAG 1 cut(s) 1109
PsuI RGATCY 1 cut(s) 826
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 3 cut(s) 16, 758, 876
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 4 cut(s) 255, 307, 341, 1161
Sau3AI GATC 5 cut(s) 94, 672, 826, 868, 895
Sau96I GGNCC 1 cut(s) 941
SchI GAGTC 3 cut(s) 419, 617, 618
ScrFI CCNGG 5 cut(s) 311, 600, 939, 954, 1094
SduI GDGCHC 3 cut(s) 519, 1065, 1092
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 2 cut(s) 94, 417
SfcI CTRYAG 1 cut(s) 1105
SinI GGWCC 1 cut(s) 941
SmiMI CAYNNNNRTG 3 cut(s) 16, 758, 876
SmlI CTYRAG 1 cut(s) 614
SmoI CTYRAG 1 cut(s) 614
SnaBI TACGTA 1 cut(s) 998
SphI GCATGC 1 cut(s) 466
Sse9I AATT 6 cut(s) 220, 365, 381, 392, 814, 1174
SsiI CCGC 4 cut(s) 255, 307, 565, 1086
SspMI CTAG 2 cut(s) 261, 804
StyD4I CCNGG 5 cut(s) 309, 598, 937, 952, 1092
StyI CCWWGG 4 cut(s) 719, 840, 853, 1081
TaaI ACNGT 2 cut(s) 651, 1015
TaiI ACGT 4 cut(s) 533, 669, 686, 1000
TaqI TCGA 5 cut(s) 276, 369, 379, 663, 733
TasI AATT 6 cut(s) 220, 365, 381, 392, 814, 1174
TatI WGTACW 1 cut(s) 492
TauI GCSGC 2 cut(s) 257, 309
TfiI GAWTC 4 cut(s) 236, 660, 730, 763
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 2 cut(s) 141, 795
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 2 cut(s) 340, 1160
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 6 cut(s) 158, 228, 262, 406, 458, 776
TspGWI ACGGA 2 cut(s) 404, 770
TspRI CASTG 2 cut(s) 141, 795
Van91I CCANNNNNTGG 2 cut(s) 170, 1024
VpaK11BI GGWCC 1 cut(s) 941
XapI RAATTY 4 cut(s) 365, 381, 392, 814
XceI RCATGY 3 cut(s) 21, 466, 1006
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 1074
XspI CTAG 2 cut(s) 261, 804
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.