Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

51413732 .. 51417731

Gene Structure 4000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG350000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTTATTGGGGACTCATTGAGTCTGAACCAATGGCAATCACTCGCTTGCTTGCTTCATACGGCTGTTCCAAATGCCAAATACACATTGGTCAGGTCTGGAGGACTCTCCGCATTCACATTTCCGGAATACAATGTTAAGGTGTTGTTCTCCCGCAATGCCTTTCTCGTGGACATTATCAGCACAAGTGCTGGGCGAGTCCTAAAACTTGACTCAATCTCGCTTGAAAACCAGAAACTGTGGACAGGAGTTGACGTCATGATCTTCAACACATGGCATTGGTGGCTTCACACTGGAAGAAAGCAAGCATGGGATCTTATTGAAAAAGGGGGGAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCATATGAGAAGGCTCTCAACACTTGGGCAACATGGGTAGACACCCATGTGGACACTGCAAAAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGATGATCCAAAAGCAGGAAGCTGCAATGGGCAAACAGAACCACTTCGAGGTCCAAGCTATCCTCATGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCCATGTCAAAGCCCGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

255

Amino Acids

28.38

Weight (kDa)

7.74

Isoelectric Point (pI)

29.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 250	3.6e-84	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccB1I	GGYRCC	1 cut(s)	651
AccI	GTMKAC	1 cut(s)	405
AccII	CGCG	1 cut(s)	588
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	111, 154
AclWI	GGATC	2 cut(s)	321, 482
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	2 cut(s)	497, 530
AgsI	TTSAA	3 cut(s)	227, 268, 323
AjnI	CCWGG	1 cut(s)	444
AjuI	GAANNNNNNNTTGG	2 cut(s)	425, 457
AleI	CACNNNNGTG	1 cut(s)	413
AluBI	AGCT	4 cut(s)	504, 540, 713, 752
AluI	AGCT	4 cut(s)	504, 540, 713, 752
AlwI	GGATC	2 cut(s)	321, 482
AlwNI	CAGNNNCTG	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	1 cut(s)	667
ApeKI	GCWGC	3 cut(s)	504, 696, 749
Asp700I	GAANNNNTTC	1 cut(s)	525
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	533
BaeGI	GKGCMC	2 cut(s)	654, 681
BanI	GGYRCC	1 cut(s)	651
BauI	CACGAG	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	430
BbvI	GCAGC	3 cut(s)	491, 708, 761
BccI	CCATC	1 cut(s)	641
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	446
BfmI	CTRYAG	1 cut(s)	694
BisI	GCNGC	3 cut(s)	505, 697, 750
BlsI	GCNGC	3 cut(s)	506, 698, 751
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	533
BmiI	GGNNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	446
BmrI	ACTGGG	1 cut(s)	490
BmuI	ACTGGG	1 cut(s)	490
BpiI	GAAGAC	1 cut(s)	430
BpmI	CTGGAG	2 cut(s)	120, 735
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	432, 445, 670, 687
BsaWI	WCCGGW	1 cut(s)	124
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 530
Bse1I	ACTGG	2 cut(s)	298, 485
Bse3DI	GCAATG	2 cut(s)	163, 514
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	4 cut(s)	432, 445, 670, 687
BseGI	GGATG	2 cut(s)	490, 553
BseLI	CCNNNNNNNGG	2 cut(s)	497, 530
BseMI	GCAATG	2 cut(s)	163, 514
BseNI	ACTGG	2 cut(s)	298, 485
BseSI	GKGCMC	2 cut(s)	654, 681
BseXI	GCAGC	3 cut(s)	491, 708, 761
BseYI	CCCAGC	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	588
BshFI	GGCC	1 cut(s)	669
BshNI	GGYRCC	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	497, 530
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	669
Bsp1286I	GDGCHC	2 cut(s)	654, 681
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	4 cut(s)	261, 313, 460, 487
BspACI	CCGC	2 cut(s)	111, 154
BspANI	GGCC	1 cut(s)	669
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	1 cut(s)	653
BspMAI	CTGCAG	1 cut(s)	698
BspPI	GGATC	2 cut(s)	321, 482
BspT107I	GGYRCC	1 cut(s)	651
BsrDI	GCAATG	2 cut(s)	163, 514
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	298, 485
BssECI	CCNNGG	4 cut(s)	432, 445, 670, 687
BssMI	GATC	4 cut(s)	261, 313, 460, 487
BssNI	GRCGYC	1 cut(s)	255
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	432, 670
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	3 cut(s)	49, 53, 306
BstDEI	CTNAG	1 cut(s)	638
BstF5I	GGATG	2 cut(s)	490, 553
BstFNI	CGCG	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	4 cut(s)	264, 316, 463, 490
BstMBI	GATC	4 cut(s)	261, 313, 460, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 755
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	2 cut(s)	654, 681
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	491, 708, 761
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	490, 553
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	291, 420
Cac8I	GCNNGC	3 cut(s)	49, 53, 306
CaiI	CAGNNNCTG	1 cut(s)	238
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	8 cut(s)	259, 273, 309, 352, 399, 413, 548, 592
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	4 cut(s)	263, 315, 462, 489
DpnII	GATC	4 cut(s)	261, 313, 460, 487
Eco130I	CCWWGG	2 cut(s)	432, 670
Eco47I	GGWCC	1 cut(s)	533
EcoRII	CCWGG	1 cut(s)	444
EcoT14I	CCWWGG	2 cut(s)	432, 670
ErhI	CCWWGG	2 cut(s)	432, 670
FaeI	CATG	8 cut(s)	262, 276, 312, 355, 402, 416, 551, 595
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	8 cut(s)	258, 272, 308, 351, 398, 412, 547, 591
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	3 cut(s)	505, 697, 750
FokI	GGATG	2 cut(s)	497, 540
Fsp4HI	GCNGC	3 cut(s)	505, 697, 750
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	3 cut(s)	505, 697, 750
GsaI	CCCAGC	1 cut(s)	195
GsuI	CTGGAG	2 cut(s)	120, 735
HaeIII	GGCC	1 cut(s)	669
HapII	CCGG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	590
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	8 cut(s)	262, 276, 312, 355, 402, 416, 551, 595
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	5 cut(s)	14, 22, 105, 198, 212
HpaII	CCGG	1 cut(s)	125
Hpy166II	GTNNAC	5 cut(s)	172, 243, 253, 406, 418
Hpy188I	TCNGA	3 cut(s)	27, 478, 691
Hpy188III	TCNNGA	4 cut(s)	99, 125, 259, 722
Hpy8I	GTNNAC	5 cut(s)	172, 243, 253, 406, 418
HpyAV	CCTTC	2 cut(s)	340, 370
HpyCH4III	ACNGT	1 cut(s)	240
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	6 cut(s)	368, 425, 507, 696, 749, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 755
HpyF3I	CTNAG	1 cut(s)	638
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	8 cut(s)	262, 276, 312, 355, 402, 416, 551, 595
HspAI	GCGC	1 cut(s)	588
Kpn2I	TCCGGA	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	261, 313, 460, 487
Lsp1109I	GCAGC	3 cut(s)	491, 708, 761
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	4 cut(s)	263, 315, 462, 489
MboI	GATC	4 cut(s)	261, 313, 460, 487
MboII	GAAGA	5 cut(s)	256, 309, 430, 433, 731
MfeI	CAATTG	1 cut(s)	608
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	2 cut(s)	654, 681
MluCI	AATT	3 cut(s)	339, 469, 608
MlyI	GAGTC	5 cut(s)	8, 31, 99, 206, 207
MnlI	CCTC	5 cut(s)	95, 524, 555, 667, 697
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	138, 766
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	113
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	2 cut(s)	283, 755
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	4 cut(s)	261, 313, 460, 487
NlaIII	CATG	8 cut(s)	262, 276, 312, 355, 402, 416, 551, 595
NlaIV	GGNNCC	1 cut(s)	653
NmuCI	GTSAC	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	413
PagI	TCATGA	1 cut(s)	258
PctI	GAATGC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	525
PkrI	GCNGC	3 cut(s)	506, 698, 751
PleI	GAGTC	5 cut(s)	8, 30, 99, 206, 206
PpsI	GAGTC	5 cut(s)	8, 30, 99, 206, 206
Psp6I	CCWGG	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	698
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	313
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
RseI	CAYNNNNRTG	1 cut(s)	413
SaqAI	TTAA	2 cut(s)	138, 766
SatI	GCNGC	3 cut(s)	505, 697, 750
Sau3AI	GATC	4 cut(s)	261, 313, 460, 487
Sau96I	GGNCC	1 cut(s)	533
SchI	GAGTC	5 cut(s)	8, 31, 99, 206, 207
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	2 cut(s)	654, 681
SfcI	CTRYAG	1 cut(s)	694
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	339, 469, 608
SsiI	CCGC	2 cut(s)	111, 154
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	2 cut(s)	432, 670
TaaI	ACNGT	1 cut(s)	240
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	529
TasI	AATT	3 cut(s)	339, 469, 608
TatI	WGTACW	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	138, 766
Tru9I	TTAA	2 cut(s)	138, 766
TscAI	CASTG	2 cut(s)	298, 427
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	3 cut(s)	504, 696, 749
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	2 cut(s)	47, 462
TspRI	CASTG	2 cut(s)	298, 427
VpaK11BI	GGWCC	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	525
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.