Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

44233810 .. 44234792

Gene Structure 983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG335600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGATCTTCAACACATGGCATTGGTGGCTTCACACTGGAAGAAAGCAAGCATGGGATCTTATTGAGAAAGGGGGGAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCATATGAGAAAGCTCTCAACACTTGGGCAACATGGGTAGACACCCATGTGGACCCTGCAAAAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGATGATCCAAAAGCAGGAAGCTGCAATGGGCAAACAGAACCACTTCGAGGTCCAAGCTATCCTCGTGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCCATGTCAAAGCCTGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

169

Amino Acids

18.94

Weight (kDa)

7.78

Isoelectric Point (pI)

28.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	1 - 164	1.4e-56	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	2 cut(s)	63, 224
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	239, 272
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	5 cut(s)	122, 246, 282, 455, 494
AluI	AGCT	5 cut(s)	122, 246, 282, 455, 494
AlwI	GGATC	2 cut(s)	63, 224
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	3 cut(s)	246, 438, 491
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	160, 275
AvaII	GGWCC	2 cut(s)	160, 275
BaeGI	GKGCMC	2 cut(s)	396, 423
BanI	GGYRCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	172
BbvI	GCAGC	3 cut(s)	233, 450, 503
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	188
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	3 cut(s)	247, 439, 492
BlsI	GCNGC	3 cut(s)	248, 440, 493
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	2 cut(s)	160, 275
BmgT120I	GGNCC	2 cut(s)	160, 275
BmiI	GGNNCC	2 cut(s)	162, 395
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	172
BpmI	CTGGAG	1 cut(s)	477
BsaJI	CCNNGG	4 cut(s)	174, 187, 412, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	239, 272
Bse1I	ACTGG	2 cut(s)	40, 227
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	4 cut(s)	174, 187, 412, 429
BseGI	GGATG	2 cut(s)	232, 295
BseLI	CCNNNNNNNGG	2 cut(s)	239, 272
BseMI	GCAATG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	40, 227
BseSI	GKGCMC	2 cut(s)	396, 423
BseXI	GCAGC	3 cut(s)	233, 450, 503
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	393
BslI	CCNNNNNNNGG	2 cut(s)	239, 272
BsnI	GGCC	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	396, 423
Bsp1407I	TGTACA	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	3, 55, 202, 229
BspANI	GGCC	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	162, 395
BspMAI	CTGCAG	1 cut(s)	440
BspPI	GGATC	2 cut(s)	63, 224
BspT107I	GGYRCC	1 cut(s)	393
BsrDI	GCAATG	1 cut(s)	256
BsrGI	TGTACA	1 cut(s)	292
BsrI	ACTGG	2 cut(s)	40, 227
BssECI	CCNNGG	4 cut(s)	174, 187, 412, 429
BssMI	GATC	4 cut(s)	3, 55, 202, 229
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	174, 412
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	232, 295
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	4 cut(s)	6, 58, 205, 232
BstMBI	GATC	4 cut(s)	3, 55, 202, 229
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 497
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	436
BstSLI	GKGCMC	2 cut(s)	396, 423
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	3 cut(s)	233, 450, 503
BstV2I	GAAGAC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	232, 295
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	160, 275
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	6 cut(s)	15, 51, 94, 141, 155, 334
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	4 cut(s)	5, 57, 204, 231
DpnII	GATC	4 cut(s)	3, 55, 202, 229
Eco130I	CCWWGG	2 cut(s)	174, 412
Eco47I	GGWCC	2 cut(s)	160, 275
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	2 cut(s)	174, 412
ErhI	CCWWGG	2 cut(s)	174, 412
FaeI	CATG	6 cut(s)	18, 54, 97, 144, 158, 337
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	6 cut(s)	14, 50, 93, 140, 154, 333
FauNDI	CATATG	1 cut(s)	112
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	247, 439, 492
FokI	GGATG	2 cut(s)	239, 282
Fsp4HI	GCNGC	3 cut(s)	247, 439, 492
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	247, 439, 492
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	1 cut(s)	411
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	6 cut(s)	18, 54, 97, 144, 158, 337
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
Hpy166II	GTNNAC	3 cut(s)	148, 160, 293
Hpy188I	TCNGA	2 cut(s)	220, 433
Hpy188III	TCNNGA	1 cut(s)	464
Hpy8I	GTNNAC	3 cut(s)	148, 160, 293
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	6 cut(s)	110, 167, 249, 438, 491, 500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 497
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	6 cut(s)	18, 54, 97, 144, 158, 337
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	4 cut(s)	3, 55, 202, 229
Lsp1109I	GCAGC	3 cut(s)	233, 450, 503
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	5, 57, 204, 231
MboI	GATC	4 cut(s)	3, 55, 202, 229
MboII	GAAGA	4 cut(s)	51, 172, 175, 473
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	396, 423
MluCI	AATT	3 cut(s)	81, 211, 350
MnlI	CCTC	4 cut(s)	266, 297, 409, 439
MroXI	GAANNNNTTC	1 cut(s)	267
MseI	TTAA	1 cut(s)	508
MslI	CAYNNNNRTG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	188
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	25, 497
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	4 cut(s)	3, 55, 202, 229
NlaIII	CATG	6 cut(s)	18, 54, 97, 144, 158, 337
NlaIV	GGNNCC	2 cut(s)	162, 395
NmuCI	GTSAC	1 cut(s)	361
OliI	CACNNNNGTG	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	248, 440, 493
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	162, 395
PspPI	GGNCC	2 cut(s)	160, 275
PstI	CTGCAG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	508
SatI	GCNGC	3 cut(s)	247, 439, 492
Sau3AI	GATC	4 cut(s)	3, 55, 202, 229
Sau96I	GGNCC	2 cut(s)	160, 275
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	2 cut(s)	396, 423
SetI	ASST	8 cut(s)	104, 124, 180, 248, 277, 284, 457, 496
SfcI	CTRYAG	1 cut(s)	436
SinI	GGWCC	2 cut(s)	160, 275
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	3 cut(s)	81, 211, 350
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	174, 412
TaqI	TCGA	1 cut(s)	271
TasI	AATT	3 cut(s)	81, 211, 350
TatI	WGTACW	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	508
Tru9I	TTAA	1 cut(s)	508
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	3 cut(s)	246, 438, 491
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	2 cut(s)	160, 275
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.