RchiOBHm_Chr2g0131441

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
47650030 .. 47655227
5198 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50279

Sequence Viewer

Length: 1092 bp
ATGGCTTATTTTTTCATAAGCACTGCTTTTATGGTGGTCACTCTTCTGCACTACCATGTACATGGAGATCATCAGCAGAAGCATTCTGACAGAGAAACTAAAGAAGCAGGAACTGAAGGATGTGATATGTTCCAAGGGAGGTGGGTTTCCGATGAGTCATATCCGCTCTACAATTCATCACAATGCTCCTTCGTAGAGAGAGAGTTCACTTGCATACAAAACGGGCGTCCGGACGAATTTTATCTCAAATTCCGGTGGCAGCCCACTGGTTGCAACTTAACAAGGTTCAACGGGGGAGATTTCTTGAAAAGATATAGAGGGAAGAGCTTCATGTTTGTTGGGGACTCGTTGAGTTTGAATCAATGGCAGTCACTCACTTGCATGCTTCATACAGCTGTTCCAGATGCCGACTATACACTTGCTAGGGCTGGAGACCTATCCACATTCACCTTCCCAGAATACAATGTTAAGGTGATGTTCTCTCGGAATGCATTTCTGGTCGATACAATAGCAACACCTGCTGGCCGAGTTCTTAAGCTCGACTCTATTGAAAGTGGGAAACTTTGGAAGGGAATTGACTTCTTGATCTTCAACACATGGCACTGGTGGCTGCACACTGGAAGGAAGCAACCTTGGGATCTTATTCAAGAAGGAAACAGTACTTATAAAGACATGGACCGGTTGGTTGCGTATGAGAAAGGGCTCAAAACATGGGCTAAATGGGTAGACACCAATGTGGACCAAACAAAAACCAGAGTCTTCTTCCAAGGAGTTTCCCCCGATCACAATAATGCAAGTGATTGGAAGGATCCTACTGCAAAAACTTGTGAGGGACAAATGCAACCAGTGGCCGGGTCTCAGTATCCAGCAGGACCACATCCAGCAGAGCAAGTAGTAGAAAGAGTATTGCGTTCCATGTCATTTCGAGTTTATTTGCTAAACGTGACGACCCTTTCACAACTAAGAAAAGATGGGCATCCATCTGTGTACGGCCATGGTGGTCACAAGGACATGGATTGCAGCCATTGGTGTCTTGCTGGAGTTCCGGATACATGGAATGAACTCCTATATGCTGCTCTTATACAAAGCTAG

Protein Analysis

363

Amino Acids

41.68

Weight (kDa)

6.53

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 40 - 92 1.4e-23 PMR5 N terminal Domain
PC-Esterase PF13839 93 - 358 1.1e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 726
AccIII TCCGGA 2 cut(s) 229, 1045
AciI CCGC 1 cut(s) 164
AclWI GGATC 3 cut(s) 645, 803, 816
AcoI YGGCCR 3 cut(s) 523, 849, 991
AcsI RAATTY 2 cut(s) 236, 248
AcuI CTGAAG 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 226
AfaI GTAC 3 cut(s) 60, 661, 989
AfiI CCNNNNNNNGG 1 cut(s) 851
AflII CTTAAG 1 cut(s) 533
AgeI ACCGGT 1 cut(s) 678
AgsI TTSAA 6 cut(s) 289, 307, 358, 551, 592, 647
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 4 cut(s) 327, 395, 538, 1089
AluI AGCT 4 cut(s) 327, 395, 538, 1089
Alw26I GTCTC 2 cut(s) 426, 861
AlwI GGATC 3 cut(s) 645, 803, 816
AlwNI CAGNNNCTG 1 cut(s) 113
Aor13HI TCCGGA 2 cut(s) 229, 1045
AoxI GGCC 3 cut(s) 523, 849, 991
ApeKI GCWGC 4 cut(s) 259, 610, 1020, 1073
ApoI RAATTY 2 cut(s) 236, 248
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AsiGI ACCGGT 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 3 cut(s) 676, 739, 872
AsuC2I CCSGG 1 cut(s) 853
AsuHPI GGTGA 2 cut(s) 439, 484
AvaII GGWCC 3 cut(s) 676, 739, 872
BamHI GGATCC 1 cut(s) 808
BanII GRGCYC 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 751
BbvI GCAGC 4 cut(s) 271, 597, 1032, 1060
BccI CCATC 2 cut(s) 965, 988
BceAI ACGGC 1 cut(s) 1006
BciVI GTATCC 2 cut(s) 873, 1042
BcnI CCSGG 1 cut(s) 853
BcoDI GTCTC 2 cut(s) 426, 861
BfaI CTAG 2 cut(s) 423, 1090
BfrI CTTAAG 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 526
BfuI GTATCC 2 cut(s) 873, 1042
BisI GCNGC 4 cut(s) 260, 611, 1021, 1074
BlsI GCNGC 4 cut(s) 261, 612, 1022, 1075
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 1 cut(s) 853
Bme18I GGWCC 3 cut(s) 676, 739, 872
BmgT120I GGNCC 3 cut(s) 676, 739, 872
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 1 cut(s) 853
BmsI GCATC 2 cut(s) 394, 985
BpiI GAAGAC 1 cut(s) 751
BpmI CTGGAG 2 cut(s) 450, 1059
BpuMI CCSGG 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 975
BsaHI GRCGYC 1 cut(s) 226
BsaI GGTCTC 2 cut(s) 426, 861
BsaJI CCNNGG 4 cut(s) 133, 632, 766, 994
BsaWI WCCGGW 4 cut(s) 229, 252, 678, 1045
Bsc4I CCNNNNNNNGG 1 cut(s) 851
Bse118I RCCGGY 1 cut(s) 678
Bse1I ACTGG 4 cut(s) 271, 608, 622, 845
Bse8I GATNNNNATC 1 cut(s) 975
BseAI TCCGGA 2 cut(s) 229, 1045
BseDI CCNNGG 4 cut(s) 133, 632, 766, 994
BseGI GGATG 3 cut(s) 125, 877, 976
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 1 cut(s) 851
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 4 cut(s) 271, 608, 622, 845
BseXI GCAGC 4 cut(s) 271, 597, 1032, 1060
BsgI GTGCAG 2 cut(s) 32, 596
BshFI GGCC 3 cut(s) 525, 851, 993
BshTI ACCGGT 1 cut(s) 678
BsiSI CCGG 5 cut(s) 230, 253, 679, 852, 1046
BslFI GGGAC 2 cut(s) 356, 846
BslI CCNNNNNNNGG 1 cut(s) 851
BsmAI GTCTC 2 cut(s) 426, 861
BsmFI GGGAC 2 cut(s) 356, 846
BsmI GAATGC 2 cut(s) 82, 493
BsnI GGCC 3 cut(s) 525, 851, 993
Bso31I GGTCTC 2 cut(s) 426, 861
Bsp1286I GDGCHC 1 cut(s) 705
Bsp13I TCCGGA 2 cut(s) 229, 1045
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 5 cut(s) 67, 585, 637, 781, 808
Bsp19I CCATGG 1 cut(s) 994
BspACI CCGC 1 cut(s) 164
BspANI GGCC 3 cut(s) 525, 851, 993
BspCNI CTCAG 1 cut(s) 871
BspEI TCCGGA 2 cut(s) 229, 1045
BspLI GGNNCC 1 cut(s) 810
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 3 cut(s) 645, 803, 816
BspQI GCTCTTC 1 cut(s) 317
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 2 cut(s) 426, 861
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 678
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 4 cut(s) 271, 608, 622, 845
BssAI RCCGGY 1 cut(s) 678
BssECI CCNNGG 4 cut(s) 133, 632, 766, 994
BssMI GATC 5 cut(s) 67, 585, 637, 781, 808
BssNI GRCGYC 1 cut(s) 226
BssT1I CCWWGG 4 cut(s) 133, 632, 766, 994
Bst4CI ACNGT 1 cut(s) 659
Bst6I CTCTTC 2 cut(s) 48, 317
BstACI GRCGYC 1 cut(s) 226
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 383, 523
BstDEI CTNAG 2 cut(s) 858, 962
BstDSI CCRYGG 1 cut(s) 994
BstF5I GGATG 3 cut(s) 125, 877, 976
BstKTI GATC 5 cut(s) 70, 588, 640, 784, 811
BstMAI GTCTC 2 cut(s) 426, 861
BstMBI GATC 5 cut(s) 67, 585, 637, 781, 808
BstMWI GCNNNNNNNGC 2 cut(s) 518, 607
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 851
BstV1I GCAGC 4 cut(s) 271, 597, 1032, 1060
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 2 cut(s) 637, 808
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 2 cut(s) 637, 808
BsuI GTATCC 2 cut(s) 873, 1042
BsuRI GGCC 3 cut(s) 525, 851, 993
BtgI CCRYGG 1 cut(s) 994
BtsCI GGATG 3 cut(s) 125, 877, 976
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 5 cut(s) 21, 264, 601, 615, 852
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 2 cut(s) 383, 523
CaiI CAGNNNCTG 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 678
Cfr13I GGNCC 3 cut(s) 676, 739, 872
CseI GACGC 1 cut(s) 215
Csp6I GTAC 3 cut(s) 59, 660, 988
CspAI ACCGGT 1 cut(s) 678
CspCI CAANNNNNGTGG 2 cut(s) 122, 157
CviQI GTAC 3 cut(s) 59, 660, 988
DdeI CTNAG 2 cut(s) 858, 962
DpnI GATC 5 cut(s) 69, 587, 639, 783, 810
DpnII GATC 5 cut(s) 67, 585, 637, 781, 808
EaeI YGGCCR 3 cut(s) 523, 849, 991
Eam1104I CTCTTC 2 cut(s) 48, 317
EarI CTCTTC 2 cut(s) 48, 317
Eco130I CCWWGG 4 cut(s) 133, 632, 766, 994
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 2 cut(s) 426, 861
Eco47I GGWCC 3 cut(s) 676, 739, 872
Eco57I CTGAAG 1 cut(s) 135
EcoT14I CCWWGG 4 cut(s) 133, 632, 766, 994
EcoT22I ATGCAT 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 4 cut(s) 133, 632, 766, 994
FalI AAGNNNNNCTT 2 cut(s) 10, 42
FaqI GGGAC 2 cut(s) 356, 846
FblI GTMKAC 1 cut(s) 726
Fnu4HI GCNGC 4 cut(s) 260, 611, 1021, 1074
FokI GGATG 3 cut(s) 132, 864, 963
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 4 cut(s) 260, 611, 1021, 1074
FspBI CTAG 2 cut(s) 423, 1090
GluI GCNGC 4 cut(s) 260, 611, 1021, 1074
GsuI CTGGAG 2 cut(s) 450, 1059
HaeIII GGCC 3 cut(s) 525, 851, 993
HapII CCGG 5 cut(s) 230, 253, 679, 852, 1046
HgaI GACGC 1 cut(s) 215
Hin1I GRCGYC 1 cut(s) 226
HinfI GANTC 5 cut(s) 155, 344, 358, 542, 756
HpaII CCGG 5 cut(s) 230, 253, 679, 852, 1046
HphI GGTGA 2 cut(s) 439, 484
Hpy166II GTNNAC 4 cut(s) 207, 727, 739, 988
Hpy188I TCNGA 3 cut(s) 88, 151, 486
Hpy188III TCNNGA 6 cut(s) 230, 304, 401, 583, 647, 1046
Hpy8I GTNNAC 4 cut(s) 207, 727, 739, 988
HpyAV CCTTC 7 cut(s) 110, 199, 460, 562, 615, 644, 799
HpyCH4III ACNGT 1 cut(s) 659
HpyCH4IV ACGT 1 cut(s) 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 607
HpyF3I CTNAG 2 cut(s) 858, 962
HpySE526I ACGT 1 cut(s) 942
Hsp92I GRCGYC 1 cut(s) 226
Kpn2I TCCGGA 2 cut(s) 229, 1045
Kzo9I GATC 5 cut(s) 67, 585, 637, 781, 808
LguI GCTCTTC 1 cut(s) 317
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 4 cut(s) 271, 597, 1032, 1060
LweI GCATC 2 cut(s) 394, 985
MaeI CTAG 2 cut(s) 423, 1090
MaeII ACGT 1 cut(s) 942
MaeIII GTNAC 4 cut(s) 37, 369, 943, 1001
MalI GATC 5 cut(s) 69, 587, 639, 783, 810
MbiI CCGCTC 1 cut(s) 166
MboI GATC 5 cut(s) 67, 585, 637, 781, 808
MboII GAAGA 5 cut(s) 35, 334, 580, 751, 754
MflI RGATCY 2 cut(s) 637, 808
MhlI GDGCHC 1 cut(s) 705
MluCI AATT 4 cut(s) 172, 236, 248, 573
MlyI GAGTC 4 cut(s) 164, 338, 536, 765
MnlI CCTC 3 cut(s) 132, 311, 823
Mph1103I ATGCAT 1 cut(s) 493
MroI TCCGGA 2 cut(s) 229, 1045
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 3 cut(s) 278, 468, 534
MslI CAYNNNNRTG 6 cut(s) 54, 60, 181, 380, 734, 789
MspA1I CMGCKG 1 cut(s) 395
MspCI CTTAAG 1 cut(s) 533
MspI CCGG 5 cut(s) 230, 253, 679, 852, 1046
MspR9I CCNGG 1 cut(s) 853
Mva1269I GAATGC 2 cut(s) 82, 493
MwoI GCNNNNNNNGC 2 cut(s) 518, 607
NciI CCSGG 1 cut(s) 853
NcoI CCATGG 1 cut(s) 994
NdeII GATC 5 cut(s) 67, 585, 637, 781, 808
NlaIV GGNNCC 1 cut(s) 810
NmeAIII GCCGAG 1 cut(s) 551
NmuCI GTSAC 4 cut(s) 37, 369, 943, 1001
NsiI ATGCAT 1 cut(s) 493
NspI RCATGY 1 cut(s) 385
OliI CACNNNNGTG 1 cut(s) 734
PaeI GCATGC 1 cut(s) 385
PaqCI CACCTGC 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 317
PctI GAATGC 2 cut(s) 82, 493
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 358
PinAI ACCGGT 1 cut(s) 678
PkrI GCNGC 4 cut(s) 261, 612, 1022, 1075
PleI GAGTC 4 cut(s) 163, 338, 536, 764
PpsI GAGTC 4 cut(s) 163, 338, 536, 764
PsiI TTATAA 1 cut(s) 666
PspN4I GGNNCC 1 cut(s) 810
PspPI GGNCC 3 cut(s) 676, 739, 872
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 637, 808
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 3 cut(s) 60, 661, 989
RsaNI GTAC 3 cut(s) 59, 660, 988
RseI CAYNNNNRTG 6 cut(s) 54, 60, 181, 380, 734, 789
SapI GCTCTTC 1 cut(s) 317
SaqAI TTAA 3 cut(s) 278, 468, 534
SatI GCNGC 4 cut(s) 260, 611, 1021, 1074
Sau3AI GATC 5 cut(s) 67, 585, 637, 781, 808
Sau96I GGNCC 3 cut(s) 676, 739, 872
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 4 cut(s) 164, 338, 536, 765
ScrFI CCNGG 1 cut(s) 853
SduI GDGCHC 1 cut(s) 705
SfaNI GCATC 2 cut(s) 394, 985
SinI GGWCC 3 cut(s) 676, 739, 872
SmiMI CAYNNNNRTG 6 cut(s) 54, 60, 181, 380, 734, 789
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 385
Sse9I AATT 4 cut(s) 172, 236, 248, 573
SsiI CCGC 1 cut(s) 164
SspMI CTAG 2 cut(s) 423, 1090
StyD4I CCNGG 1 cut(s) 851
StyI CCWWGG 4 cut(s) 133, 632, 766, 994
TaaI ACNGT 1 cut(s) 659
TaiI ACGT 1 cut(s) 945
TaqI TCGA 3 cut(s) 501, 540, 925
TasI AATT 4 cut(s) 172, 236, 248, 573
TatI WGTACW 2 cut(s) 58, 659
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 3 cut(s) 278, 468, 534
Tru9I TTAA 3 cut(s) 278, 468, 534
TscAI CASTG 5 cut(s) 28, 271, 608, 622, 852
TseFI GTSAC 4 cut(s) 37, 369, 943, 1001
TseI GCWGC 4 cut(s) 259, 610, 1020, 1073
Tsp45I GTSAC 4 cut(s) 37, 369, 943, 1001
TspDTI ATGAA 5 cut(s) 4, 165, 319, 377, 1074
TspRI CASTG 5 cut(s) 28, 271, 608, 622, 852
Vha464I CTTAAG 1 cut(s) 533
VpaK11BI GGWCC 3 cut(s) 676, 739, 872
XapI RAATTY 2 cut(s) 236, 248
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 726
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 2 cut(s) 423, 1090
ZrmI AGTACT 1 cut(s) 661
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.