Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

45318162 .. 45337081

Gene Structure 18920 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGGTTGGTTTTACGCCAAGTAAATGAATCTTCTAGAGTACCACAATTGTACTATAACCATTTTTTCTTGTCCTCTCTGATATCATCGATCATGGATGGTTTTGCAGTACTGGTAGTGCTGGTAATGATTTCTGTTTTGCAGCAACAAGTGCATGGGATTGGGGGTTGTGATGTTTCCCGGGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAGCTGCCCCTTCATTGAGAAGGAGTTTGACTGTGTAAAGAATGGTCGCCCAGACAAGGACTATCTCAAATACAGATGGCAGCCACTTGGCTGTAACTTACCAAGATTCAATGGAATTGATCTTTTGAGGAGGCTAAGGGGGAAGAACATCATGTTTATTGGGGACTCATTGAGTCTGAACCAATGGCAATCACTCGCTTGCTTGCTTCATACGGCTGTTCCAACTGCCAAATACACATCGGTCAGGTCTGGAGAACTCTCCACATTCACATTTCCGGAATACAATGTTAAGGTGTTGTTCTCCCGCAACCCCTTTCTGGTGGACATTGTCAGCACAAGTTCTGGGCGAGTCCTCAAACTTGACTCAATCTCACTTGAAAACCAGAAACTGTGGACAGGAGTTGACATCATGATCTTCAACACATGGCATTGGTGGCTTCATACCGGAAGAAAGCAAGCATGGGATCTTATCGAAGAAGGGGGCAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCCTATGAGAAGGCTCTCAACACTTGGGCAACATGGGTAGACTCCCAAGTGGACCCTGCAAGAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGGGTGATCCAAAAGCAGGAAGCTGCAATGGACAAACAGAACCACTTCCAGGTCCAAGCTATCCTCATGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCCATGCCAAAGCCAGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCAGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

381

Amino Acids

42.82

Weight (kDa)

7.17

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	56 - 108	3.5e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	109 - 376	5.3e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1029
AccI	GTMKAC	1 cut(s)	783
AccII	CGCG	1 cut(s)	966
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	1 cut(s)	532
AclWI	GGATC	2 cut(s)	699, 860
AfaI	GTAC	4 cut(s)	42, 53, 111, 930
AfiI	CCNNNNNNNGG	4 cut(s)	283, 544, 875, 908
AgsI	TTSAA	3 cut(s)	337, 605, 646
AjnI	CCWGG	2 cut(s)	822, 907
AjuI	GAANNNNNNNTTGG	2 cut(s)	803, 835
AluBI	AGCT	6 cut(s)	224, 231, 882, 918, 1091, 1130
AluI	AGCT	6 cut(s)	224, 231, 882, 918, 1091, 1130
AlwI	GGATC	2 cut(s)	699, 860
AlwNI	CAGNNNCTG	1 cut(s)	616
Ama87I	CYCGRG	1 cut(s)	180
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	1 cut(s)	1045
ApeKI	GCWGC	6 cut(s)	142, 231, 307, 882, 1074, 1127
Asp700I	GAANNNNTTC	1 cut(s)	903
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	2 cut(s)	796, 911
AsuC2I	CCSGG	2 cut(s)	181, 182
AsuHPI	GGTGA	1 cut(s)	875
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	2 cut(s)	796, 911
BaeGI	GKGCMC	2 cut(s)	1032, 1059
BanI	GGYRCC	1 cut(s)	1029
BbsI	GAAGAC	1 cut(s)	808
BbvI	GCAGC	6 cut(s)	154, 218, 319, 869, 1086, 1139
BccI	CCATC	3 cut(s)	92, 297, 1019
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	2 cut(s)	824, 909
BcnI	CCSGG	2 cut(s)	181, 182
BfaI	CTAG	2 cut(s)	36, 228
BfmI	CTRYAG	1 cut(s)	1072
BisI	GCNGC	6 cut(s)	143, 232, 308, 883, 1075, 1128
BlsI	GCNGC	6 cut(s)	144, 233, 309, 884, 1076, 1129
BmcAI	AGTACT	1 cut(s)	111
Bme1390I	CCNGG	4 cut(s)	181, 182, 824, 909
Bme18I	GGWCC	2 cut(s)	796, 911
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	796, 911
BmiI	GGNNCC	2 cut(s)	798, 1031
BmrFI	CCNGG	4 cut(s)	181, 182, 824, 909
BmrI	ACTGGG	1 cut(s)	868
BmuI	ACTGGG	1 cut(s)	868
BpiI	GAAGAC	1 cut(s)	808
BpmI	CTGGAG	2 cut(s)	498, 1113
Bpu10I	CCTNAGC	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	181, 182
Bsa29I	ATCGAT	1 cut(s)	89
BsaJI	CCNNGG	5 cut(s)	180, 181, 810, 823, 1048
BsaWI	WCCGGW	2 cut(s)	502, 671
Bsc4I	CCNNNNNNNGG	4 cut(s)	283, 544, 875, 908
Bse1I	ACTGG	3 cut(s)	117, 863, 980
Bse3DI	GCAATG	1 cut(s)	892
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	824, 909
BseCI	ATCGAT	1 cut(s)	89
BseDI	CCNNGG	5 cut(s)	180, 181, 810, 823, 1048
BseGI	GGATG	2 cut(s)	103, 931
BseLI	CCNNNNNNNGG	4 cut(s)	283, 544, 875, 908
BseMI	GCAATG	1 cut(s)	892
BseMII	CTCAG	1 cut(s)	1080
BseNI	ACTGG	3 cut(s)	117, 863, 980
BseRI	GAGGAG	1 cut(s)	370
BseSI	GKGCMC	2 cut(s)	1032, 1059
BseXI	GCAGC	6 cut(s)	154, 218, 319, 869, 1086, 1139
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	1 cut(s)	1047
BshNI	GGYRCC	1 cut(s)	1029
BshVI	ATCGAT	1 cut(s)	89
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	181, 503, 672
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	4 cut(s)	283, 544, 875, 908
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	1047
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	2 cut(s)	1032, 1059
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	1 cut(s)	928
Bsp143I	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	1047
BspCNI	CTCAG	1 cut(s)	1079
BspDI	ATCGAT	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	966
BspHI	TCATGA	2 cut(s)	196, 636
BspLI	GGNNCC	2 cut(s)	798, 1031
BspMAI	CTGCAG	1 cut(s)	1076
BspPI	GGATC	2 cut(s)	699, 860
BspT107I	GGYRCC	1 cut(s)	1029
BsrDI	GCAATG	1 cut(s)	892
BsrGI	TGTACA	1 cut(s)	928
BsrI	ACTGG	3 cut(s)	117, 863, 980
BssECI	CCNNGG	5 cut(s)	180, 181, 810, 823, 1048
BssMI	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
BssT1I	CCWWGG	2 cut(s)	810, 1048
Bst2UI	CCWGG	2 cut(s)	824, 909
Bst4CI	ACNGT	2 cut(s)	260, 618
BstAPI	GCANNNNNTGC	2 cut(s)	151, 1133
BstAUI	TGTACA	1 cut(s)	928
BstC8I	GCNNGC	3 cut(s)	427, 431, 684
BstDEI	CTNAG	3 cut(s)	362, 1016, 1066
BstF5I	GGATG	2 cut(s)	103, 931
BstFNI	CGCG	1 cut(s)	966
BstHHI	GCGC	1 cut(s)	968
BstKTI	GATC	6 cut(s)	93, 349, 642, 694, 841, 868
BstMBI	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 661, 1133
BstNI	CCWGG	2 cut(s)	824, 909
BstSCI	CCNGG	4 cut(s)	179, 180, 822, 907
BstSFI	CTRYAG	1 cut(s)	1072
BstSLI	GKGCMC	2 cut(s)	1032, 1059
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	6 cut(s)	154, 218, 319, 869, 1086, 1139
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
Bsu15I	ATCGAT	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	1047
BsuTUI	ATCGAT	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	103, 931
Cac8I	GCNNGC	3 cut(s)	427, 431, 684
CaiI	CAGNNNCTG	1 cut(s)	616
CciI	TCATGA	2 cut(s)	196, 636
CfoI	GCGC	1 cut(s)	968
Cfr13I	GGNCC	2 cut(s)	796, 911
Cfr9I	CCCGGG	1 cut(s)	180
ClaI	ATCGAT	1 cut(s)	89
Csp6I	GTAC	4 cut(s)	41, 52, 110, 929
CviQI	GTAC	4 cut(s)	41, 52, 110, 929
DdeI	CTNAG	3 cut(s)	362, 1016, 1066
DpnI	GATC	6 cut(s)	92, 348, 641, 693, 840, 867
DpnII	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
Eco130I	CCWWGG	2 cut(s)	810, 1048
Eco32I	GATATC	1 cut(s)	84
Eco47I	GGWCC	2 cut(s)	796, 911
Eco88I	CYCGRG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	822, 907
EcoRV	GATATC	1 cut(s)	84
EcoT14I	CCWWGG	2 cut(s)	810, 1048
ErhI	CCWWGG	2 cut(s)	810, 1048
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FaqI	GGGAC	1 cut(s)	404
FauI	CCCGC	1 cut(s)	539
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	6 cut(s)	143, 232, 308, 883, 1075, 1128
FokI	GGATG	2 cut(s)	110, 918
Fsp4HI	GCNGC	6 cut(s)	143, 232, 308, 883, 1075, 1128
FspBI	CTAG	2 cut(s)	36, 228
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	6 cut(s)	143, 232, 308, 883, 1075, 1128
GsuI	CTGGAG	2 cut(s)	498, 1113
HaeIII	GGCC	1 cut(s)	1047
HapII	CCGG	3 cut(s)	181, 503, 672
HhaI	GCGC	1 cut(s)	968
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	8 cut(s)	29, 203, 333, 392, 400, 576, 590, 785
HpaII	CCGG	3 cut(s)	181, 503, 672
HphI	GGTGA	1 cut(s)	875
Hpy166II	GTNNAC	5 cut(s)	550, 621, 631, 784, 796
Hpy188I	TCNGA	4 cut(s)	81, 405, 856, 1069
Hpy188III	TCNNGA	6 cut(s)	36, 197, 477, 503, 637, 1100
Hpy8I	GTNNAC	5 cut(s)	550, 621, 631, 784, 796
HpyAV	CCTTC	5 cut(s)	241, 247, 698, 718, 748
HpyCH4III	ACNGT	2 cut(s)	260, 618
HpyCH4V	TGCA	8 cut(s)	107, 142, 154, 803, 885, 1074, 1127, 1136
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 661, 1133
HpyF3I	CTNAG	3 cut(s)	362, 1016, 1066
HspAI	GCGC	1 cut(s)	966
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
Lsp1109I	GCAGC	6 cut(s)	154, 218, 319, 869, 1086, 1139
MaeI	CTAG	2 cut(s)	36, 228
MaeIII	GTNAC	2 cut(s)	320, 997
MalI	GATC	6 cut(s)	92, 348, 641, 693, 840, 867
MboI	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
MboII	GAAGA	8 cut(s)	24, 382, 634, 687, 713, 808, 811, 1109
MfeI	CAATTG	2 cut(s)	47, 986
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	1032, 1059
MluCI	AATT	6 cut(s)	47, 187, 342, 717, 847, 986
MlyI	GAGTC	5 cut(s)	386, 409, 584, 585, 779
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	8 cut(s)	85, 222, 348, 351, 590, 933, 1045, 1075
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	903
MseI	TTAA	2 cut(s)	516, 1144
MspI	CCGG	3 cut(s)	181, 503, 672
MspR9I	CCNGG	4 cut(s)	181, 182, 824, 909
MunI	CAATTG	2 cut(s)	47, 986
MvaI	CCWGG	2 cut(s)	824, 909
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	3 cut(s)	151, 661, 1133
NciI	CCSGG	2 cut(s)	181, 182
NdeII	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
NlaIV	GGNNCC	2 cut(s)	798, 1031
NmuCI	GTSAC	1 cut(s)	997
PagI	TCATGA	2 cut(s)	196, 636
PdmI	GAANNNNTTC	1 cut(s)	903
PfeI	GAWTC	3 cut(s)	29, 203, 333
PflFI	GACNNNGTC	1 cut(s)	554
PkrI	GCNGC	6 cut(s)	144, 233, 309, 884, 1076, 1129
PleI	GAGTC	5 cut(s)	386, 408, 584, 584, 779
PpsI	GAGTC	5 cut(s)	386, 408, 584, 584, 779
Psp6I	CCWGG	2 cut(s)	822, 907
PspGI	CCWGG	2 cut(s)	822, 907
PspN4I	GGNNCC	2 cut(s)	798, 1031
PspPI	GGNCC	2 cut(s)	796, 911
PstI	CTGCAG	1 cut(s)	1076
PstNI	CAGNNNCTG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	554
RsaI	GTAC	4 cut(s)	42, 53, 111, 930
RsaNI	GTAC	4 cut(s)	41, 52, 110, 929
SaqAI	TTAA	2 cut(s)	516, 1144
SatI	GCNGC	6 cut(s)	143, 232, 308, 883, 1075, 1128
Sau3AI	GATC	6 cut(s)	90, 346, 639, 691, 838, 865
Sau96I	GGNCC	2 cut(s)	796, 911
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	5 cut(s)	386, 409, 584, 585, 779
ScrFI	CCNGG	4 cut(s)	181, 182, 824, 909
SduI	GDGCHC	2 cut(s)	1032, 1059
SfcI	CTRYAG	1 cut(s)	1072
SinI	GGWCC	2 cut(s)	796, 911
SmaI	CCCGGG	1 cut(s)	182
Sse9I	AATT	6 cut(s)	47, 187, 342, 717, 847, 986
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	2 cut(s)	36, 228
StyD4I	CCNGG	4 cut(s)	179, 180, 822, 907
StyI	CCWWGG	2 cut(s)	810, 1048
TaaI	ACNGT	2 cut(s)	260, 618
TaqI	TCGA	2 cut(s)	89, 699
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	6 cut(s)	47, 187, 342, 717, 847, 986
TatI	WGTACW	3 cut(s)	51, 109, 928
TfiI	GAWTC	3 cut(s)	29, 203, 333
Tru1I	TTAA	2 cut(s)	516, 1144
Tru9I	TTAA	2 cut(s)	516, 1144
TseFI	GTSAC	1 cut(s)	997
TseI	GCWGC	6 cut(s)	142, 231, 307, 882, 1074, 1127
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	8 cut(s)	42, 185, 195, 229, 234, 425, 656, 840
TspMI	CCCGGG	1 cut(s)	180
Tth111I	GACNNNGTC	1 cut(s)	554
VpaK11BI	GGWCC	2 cut(s)	796, 911
XbaI	TCTAGA	1 cut(s)	35
XmaI	CCCGGG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	903
XspI	CTAG	2 cut(s)	36, 228
ZrmI	AGTACT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.