Rorug02G0296700

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
32931219 .. 32932274
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0296700.1

Sequence Viewer

Length: 1056 bp
ATGCCATGCCAATGGGTACCTCTTCCTCCCCCTCCTCAACTCTGCGAGTTCGCACCAGTGGGATTCATCTGCGATCTTCCCTACTACCAGTATAGGAAAGACGATGACAATCACGACCAGAAAAGACAATGCATCCAACTTAATGCTGATTTTAGGTACAGGGTTGTGAGATTAATTACTGATCGTAGAAATATATCCTGCAAATTCAAAGTACAGATCTTCTCTTCTGAGACCGGTGAATGGACTGAATCAATTGTATCAACCCAATCACTTGTCAGGTATGGTGACATCAATAGCCACATAAACTTTCCGTACAATGGGGTGTTGTATTGGATGAGTCATGATTGCACCTTTCTTATTGGGGTGGATCCATTCATGATCACCGACAGGAACAGTACTAGTTTACCTAGCACTAGCAGTTGTAGTACTCCTGATGATAGTATTGATCACTACAGATGTCGTTTCATTGAATTTGATAAGCGTGACAACAATTATGATCTTGAGTGTGTAGGTGTGAATAGAGGGTGTCTACAGATGTTAGATTATGACTGTGAAAACCATGTTTTGTCTGTTTTGGAGTTGAATGAAGAAGAAATCTCTGCAGGAGCCGGCAAATTTTGTTTGGATCAGAGGGTGAGGGATTATGCACTAGATTGGGAAATGGTTCCAGAAGATGATGATGCTGATCAGTACCTAGTTTTTCTTCTTCCTTTTGACCCTAATGATGATGGTACCTTGTACTTGCATATACGTGACAATTCAAGAATTGGACCGATTTTCACGTACAACATTCATACAGCAGAGTGGTCAAAAATAGTTGAAAAGATTTCACTCGAGCGCTATTGCTTCTACCCACTGGCGCTCCCCTGGTGGCCAACACCAGTTCCAAGTAGGGCTGGGATTGGGCCCGGCCCGTGTAAAATTTATAGAGCCCGGACCCGGACCGGAATTTTCGGGCCGGGCCTAAATAACATTTTTTCAGTTTTGGGACCGAGTTGGGCCCGGACCGTTTTTTTCGGGCCGGGTTTTCGGGTTTTTCGGGCCCAAAAGGCTTAA

Protein Analysis

351

Amino Acids

40.56

Weight (kDa)

5.15

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 53 - 255 1.2e-07 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 16, 731
AccB1I GGYRCC 2 cut(s) 16, 731
AccI GTMKAC 1 cut(s) 529
AclWI GGATC 3 cut(s) 362, 375, 633
AcoI YGGCCR 1 cut(s) 872
AcsI RAATTY 5 cut(s) 203, 470, 614, 921, 948
AfeI AGCGCT 1 cut(s) 839
AfiI CCNNNNNNNGG 3 cut(s) 240, 317, 939
AgeI ACCGGT 1 cut(s) 233
AgsI TTSAA 5 cut(s) 208, 470, 583, 762, 821
AhlI ACTAGT 1 cut(s) 398
AjnI CCWGG 1 cut(s) 866
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 3 cut(s) 362, 375, 633
Ama87I CYCGRG 1 cut(s) 833
Aor51HI AGCGCT 1 cut(s) 839
AoxI GGCC 8 cut(s) 872, 905, 910, 956, 961, 999, 1019, 1041
ApaI GGGCCC 3 cut(s) 909, 1003, 1045
ApoI RAATTY 5 cut(s) 203, 470, 614, 921, 948
AseI ATTAAT 1 cut(s) 173
AsiGI ACCGGT 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 663
Asp718I GGTACC 2 cut(s) 16, 731
AspLEI GCGC 2 cut(s) 840, 862
AsuC2I CCSGG 6 cut(s) 909, 934, 940, 960, 1003, 1023
AsuHPI GGTGA 4 cut(s) 248, 296, 373, 646
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 5 cut(s) 770, 936, 942, 989, 1005
BaeGI GKGCMC 3 cut(s) 909, 1003, 1045
BalI TGGCCA 1 cut(s) 874
BamHI GGATCC 1 cut(s) 367
BanI GGYRCC 2 cut(s) 16, 731
BanII GRGCYC 4 cut(s) 909, 934, 1003, 1045
BccI CCATC 1 cut(s) 722
BciT130I CCWGG 1 cut(s) 868
BclI TGATCA 3 cut(s) 378, 445, 685
BcnI CCSGG 6 cut(s) 909, 934, 940, 960, 1003, 1023
BcoDI GTCTC 1 cut(s) 224
BcuI ACTAGT 1 cut(s) 398
BfaI CTAG 5 cut(s) 399, 408, 414, 650, 695
BfmI CTRYAG 3 cut(s) 451, 530, 600
BfoI RGCGCY 2 cut(s) 841, 863
BglI GCCNNNNNGGC 1 cut(s) 1049
BglII AGATCT 1 cut(s) 216
BmcAI AGTACT 2 cut(s) 397, 427
Bme1390I CCNGG 7 cut(s) 868, 909, 934, 940, 960, 1003, 1023
Bme18I GGWCC 5 cut(s) 770, 936, 942, 989, 1005
BmeT110I CYCGRG 1 cut(s) 833
BmrFI CCNGG 7 cut(s) 868, 909, 934, 940, 960, 1003, 1023
BmsI GCATC 2 cut(s) 141, 670
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 6 cut(s) 909, 934, 940, 960, 1003, 1023
BsaAI YACGTR 2 cut(s) 752, 783
BsaBI GATNNNNATC 2 cut(s) 108, 684
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 866
BsaWI WCCGGW 2 cut(s) 233, 944
BsaXI ACNNNNNCTCC 2 cut(s) 846, 876
Bsc4I CCNNNNNNNGG 3 cut(s) 240, 317, 939
Bse118I RCCGGY 2 cut(s) 233, 608
Bse1I ACTGG 4 cut(s) 56, 88, 861, 881
Bse8I GATNNNNATC 2 cut(s) 108, 684
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 1 cut(s) 866
BseGI GGATG 2 cut(s) 132, 339
BseJI GATNNNNATC 2 cut(s) 108, 684
BseLI CCNNNNNNNGG 3 cut(s) 240, 317, 939
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 4 cut(s) 56, 88, 861, 881
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 3 cut(s) 909, 1003, 1045
BseYI CCCAGC 1 cut(s) 896
BshFI GGCC 8 cut(s) 874, 907, 912, 958, 963, 1001, 1021, 1043
BshNI GGYRCC 2 cut(s) 16, 731
BshTI ACCGGT 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 9 cut(s) 234, 609, 909, 934, 940, 945, 959, 1003, 1022
BslFI GGGAC 1 cut(s) 1002
BslI CCNNNNNNNGG 3 cut(s) 240, 317, 939
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 1002
BsnI GGCC 8 cut(s) 874, 907, 912, 958, 963, 1001, 1021, 1043
Bso31I GGTCTC 1 cut(s) 224
BsoBI CYCGRG 1 cut(s) 833
Bsp120I GGGCCC 3 cut(s) 905, 999, 1041
Bsp1286I GDGCHC 4 cut(s) 909, 934, 1003, 1045
Bsp143I GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
BspANI GGCC 8 cut(s) 874, 907, 912, 958, 963, 1001, 1021, 1043
BspCNI CTCAG 1 cut(s) 220
BspHI TCATGA 2 cut(s) 340, 375
BspMAI CTGCAG 1 cut(s) 604
BspPI GGATC 3 cut(s) 362, 375, 633
BspT107I GGYRCC 2 cut(s) 16, 731
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 233, 608
BsrI ACTGG 4 cut(s) 56, 88, 861, 881
BssAI RCCGGY 2 cut(s) 233, 608
BssECI CCNNGG 1 cut(s) 866
BssMI GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 3 cut(s) 395, 551, 1009
Bst6I CTCTTC 2 cut(s) 27, 229
BstBAI YACGTR 2 cut(s) 752, 783
BstC8I GCNNGC 1 cut(s) 610
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 2 cut(s) 132, 339
BstH2I RGCGCY 2 cut(s) 841, 863
BstHHI GCGC 2 cut(s) 840, 862
BstKTI GATC 9 cut(s) 76, 184, 219, 370, 381, 448, 499, 628, 688
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
BstMWI GCNNNNNNNGC 1 cut(s) 1049
BstNI CCWGG 1 cut(s) 868
BstSCI CCNGG 7 cut(s) 866, 907, 932, 938, 958, 1001, 1021
BstSFI CTRYAG 3 cut(s) 451, 530, 600
BstSLI GKGCMC 3 cut(s) 909, 1003, 1045
BstX2I RGATCY 2 cut(s) 216, 367
BstXI CCANNNNNNTGG 1 cut(s) 12
BstYI RGATCY 2 cut(s) 216, 367
BsuRI GGCC 8 cut(s) 874, 907, 912, 958, 963, 1001, 1021, 1043
BtsCI GGATG 2 cut(s) 132, 339
BtsIMutI CAGTG 2 cut(s) 63, 854
Cac8I GCNNGC 1 cut(s) 610
CciI TCATGA 2 cut(s) 340, 375
CfoI GCGC 2 cut(s) 840, 862
Cfr10I RCCGGY 2 cut(s) 233, 608
CpoI CGGWCCG 2 cut(s) 942, 1005
CspAI ACCGGT 1 cut(s) 233
CspI CGGWCCG 2 cut(s) 942, 1005
CviAII CATG 4 cut(s) 6, 341, 376, 560
DdeI CTNAG 1 cut(s) 228
DpnI GATC 9 cut(s) 75, 183, 218, 369, 380, 447, 498, 627, 687
DpnII GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
EaeI YGGCCR 1 cut(s) 872
Eam1104I CTCTTC 2 cut(s) 27, 229
EarI CTCTTC 2 cut(s) 27, 229
Eco24I GRGCYC 4 cut(s) 909, 934, 1003, 1045
Eco31I GGTCTC 1 cut(s) 224
Eco47I GGWCC 5 cut(s) 770, 936, 942, 989, 1005
Eco47III AGCGCT 1 cut(s) 839
Eco88I CYCGRG 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 866
EcoT22I ATGCAT 1 cut(s) 134
EcoT38I GRGCYC 4 cut(s) 909, 934, 1003, 1045
FaeI CATG 4 cut(s) 9, 344, 379, 563
FaqI GGGAC 1 cut(s) 1002
FatI CATG 4 cut(s) 5, 340, 375, 559
FbaI TGATCA 3 cut(s) 378, 445, 685
FblI GTMKAC 1 cut(s) 529
FokI GGATG 2 cut(s) 119, 346
FriOI GRGCYC 4 cut(s) 909, 934, 1003, 1045
FspBI CTAG 5 cut(s) 399, 408, 414, 650, 695
GlaI GCGC 2 cut(s) 839, 861
GsaI CCCAGC 1 cut(s) 900
HaeII RGCGCY 2 cut(s) 841, 863
HaeIII GGCC 8 cut(s) 874, 907, 912, 958, 963, 1001, 1021, 1043
HapII CCGG 9 cut(s) 234, 609, 909, 934, 940, 945, 959, 1003, 1022
HhaI GCGC 2 cut(s) 840, 862
Hin1II CATG 4 cut(s) 9, 344, 379, 563
Hin6I GCGC 2 cut(s) 838, 860
HinP1I GCGC 2 cut(s) 838, 860
HinfI GANTC 3 cut(s) 63, 248, 337
HpaII CCGG 9 cut(s) 234, 609, 909, 934, 940, 945, 959, 1003, 1022
HphI GGTGA 4 cut(s) 248, 296, 373, 646
Hpy166II GTNNAC 2 cut(s) 404, 530
Hpy188I TCNGA 2 cut(s) 229, 630
Hpy188III TCNNGA 7 cut(s) 113, 341, 376, 431, 500, 668, 762
Hpy8I GTNNAC 2 cut(s) 404, 530
HpyCH4III ACNGT 3 cut(s) 395, 551, 1009
HpyCH4IV ACGT 2 cut(s) 751, 782
HpyCH4V TGCA 6 cut(s) 132, 201, 348, 602, 647, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 1049
HpyF3I CTNAG 1 cut(s) 228
HpySE526I ACGT 2 cut(s) 751, 782
Hsp92II CATG 4 cut(s) 9, 344, 379, 563
HspAI GCGC 2 cut(s) 838, 860
KpnI GGTACC 2 cut(s) 20, 735
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Ksp22I TGATCA 3 cut(s) 378, 445, 685
Kzo9I GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
LmnI GCTCC 2 cut(s) 605, 867
LweI GCATC 2 cut(s) 141, 670
MaeI CTAG 5 cut(s) 399, 408, 414, 650, 695
MaeII ACGT 2 cut(s) 751, 782
MaeIII GTNAC 3 cut(s) 284, 482, 752
MalI GATC 9 cut(s) 75, 183, 218, 369, 380, 447, 498, 627, 687
MboI GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
MboII GAAGA 9 cut(s) 14, 68, 211, 216, 599, 602, 683, 695, 698
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 2 cut(s) 216, 367
MhlI GDGCHC 4 cut(s) 909, 934, 1003, 1045
MlsI TGGCCA 1 cut(s) 874
MluNI TGGCCA 1 cut(s) 874
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 7 cut(s) 30, 36, 42, 45, 515, 624, 630
Mox20I TGGCCA 1 cut(s) 874
Mph1103I ATGCAT 1 cut(s) 134
MroNI GCCGGC 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 663
MscI TGGCCA 1 cut(s) 874
MseI TTAA 3 cut(s) 141, 173, 1054
MslI CAYNNNNRTG 2 cut(s) 10, 750
Msp20I TGGCCA 1 cut(s) 874
MspI CCGG 9 cut(s) 234, 609, 909, 934, 940, 945, 959, 1003, 1022
MspR9I CCNGG 7 cut(s) 868, 909, 934, 940, 960, 1003, 1023
MunI CAATTG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 868
MwoI GCNNNNNNNGC 1 cut(s) 1049
NaeI GCCGGC 1 cut(s) 610
NciI CCSGG 6 cut(s) 909, 934, 940, 960, 1003, 1023
NdeII GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 4 cut(s) 9, 344, 379, 563
NmuCI GTSAC 3 cut(s) 284, 482, 752
NsiI ATGCAT 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 833
PagI TCATGA 2 cut(s) 340, 375
PdiI GCCGGC 1 cut(s) 610
PdmI GAANNNNTTC 1 cut(s) 663
PfeI GAWTC 2 cut(s) 63, 248
PinAI ACCGGT 1 cut(s) 233
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Ppu21I YACGTR 2 cut(s) 752, 783
PshBI ATTAAT 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 866
PspFI CCCAGC 1 cut(s) 896
PspGI CCWGG 1 cut(s) 866
PspOMI GGGCCC 3 cut(s) 905, 999, 1041
PspXI VCTCGAGB 1 cut(s) 833
PstI CTGCAG 1 cut(s) 604
PsuI RGATCY 2 cut(s) 216, 367
RseI CAYNNNNRTG 2 cut(s) 10, 750
Rsr2I CGGWCCG 2 cut(s) 942, 1005
RsrII CGGWCCG 2 cut(s) 942, 1005
SaqAI TTAA 3 cut(s) 141, 173, 1054
Sau3AI GATC 9 cut(s) 73, 181, 216, 367, 378, 445, 496, 625, 685
ScaI AGTACT 2 cut(s) 397, 427
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 7 cut(s) 868, 909, 934, 940, 960, 1003, 1023
SduI GDGCHC 4 cut(s) 909, 934, 1003, 1045
SfaNI GCATC 2 cut(s) 141, 670
SfcI CTRYAG 3 cut(s) 451, 530, 600
Sfr274I CTCGAG 1 cut(s) 833
SinI GGWCC 5 cut(s) 770, 936, 942, 989, 1005
SlaI CTCGAG 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 10, 750
SmlI CTYRAG 2 cut(s) 500, 833
SmoI CTYRAG 2 cut(s) 500, 833
SpeI ACTAGT 1 cut(s) 398
SspMI CTAG 5 cut(s) 399, 408, 414, 650, 695
StyD4I CCNGG 7 cut(s) 866, 907, 932, 938, 958, 1001, 1021
TaaI ACNGT 3 cut(s) 395, 551, 1009
TaiI ACGT 2 cut(s) 754, 785
TaqI TCGA 1 cut(s) 834
TaqII GACCGA 2 cut(s) 787, 1006
TatI WGTACW 4 cut(s) 211, 395, 425, 738
TfiI GAWTC 2 cut(s) 63, 248
Tru1I TTAA 3 cut(s) 141, 173, 1054
Tru9I TTAA 3 cut(s) 141, 173, 1054
TscAI CASTG 2 cut(s) 63, 861
TseFI GTSAC 3 cut(s) 284, 482, 752
Tsp45I GTSAC 3 cut(s) 284, 482, 752
TspDTI ATGAA 5 cut(s) 55, 364, 454, 600, 782
TspGWI ACGGA 1 cut(s) 300
TspRI CASTG 2 cut(s) 63, 861
VpaK11BI GGWCC 5 cut(s) 770, 936, 942, 989, 1005
VspI ATTAAT 1 cut(s) 173
XapI RAATTY 5 cut(s) 203, 470, 614, 921, 948
XhoI CTCGAG 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 529
XmnI GAANNNNTTC 1 cut(s) 663
XspI CTAG 5 cut(s) 399, 408, 414, 650, 695
ZrmI AGTACT 2 cut(s) 397, 427
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.