Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

23671449 .. 23674904

Gene Structure 3456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g32790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGATTGTTTTGCAGTTCTAGTTGTGATGTTTTTGTTCTCTCTGGCAGTGGCTTCTGCTGCGCAGCACCATATTGTGCATGGGATTGCAGGGTGTGATGTTTCTCGGGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAGCTGCCCCTTCATTCAGAAGGAGTTTAACTGTGTAAATAATGGTCGCCCAGACATGGACTATCTCAAATACAGATGGCAGCCTCTTGGCTGTAACTTACCAAGATTCAATGGAATTGATCTTTTGAGGAGGCTGAGAGGGAAGAGCATCATGTTTGTTGGGGACTCATTGAGTTTGAACCAATGGCAATCTCTCACTTGCATGCTTCATACTGCTGTTCCAACTGCCAAATACACATCGTTCAGGTCTGGAGGACTCTCCACATTCGCATTTCCAGAGTACAATGTTAAGGTGTTGTTCTCTCGCAACGCCTTTCTGGTGGACATAGCCGGGACAAGTGCTGGGCGAGTCCTCAAACTTGACACAATCTCACCTGAAGACCAGAAACTGTGGACAGGAGTTGATGTCATGATCTTCAACACATGGCATTGGTGGCTTCACACCGGAAGAAAGCAAGCATGGGATCTTATTGAAGAAGGGGGCAAGATAATTGGGAAGGACATGGATAGGTTGGTTGCATATGAGAAGGCTCTCAACACTTGGGCAACATGGGTGGACTCCCATGTAGACCCTGCAAAAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCAAATTCATCAGAATGGGGTGATCCAAAAGCAGGAAGCTGCAATGCACAAACAAAACCGCTTCCAGGTCCAAGCTATCCTCATGTACATCCAGCAGAGAAAATAGTAGAGAAAGTATTACGCACCATGTCAAAGCCAGTCCAATTGCTTGATGTCACAACTCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCAGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

357

Amino Acids

39.77

Weight (kDa)

7.64

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	31 - 83	2.7e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	84 - 351	2.5e-93	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	63
AccB1I	GGYRCC	1 cut(s)	954
AccI	GTMKAC	1 cut(s)	720
AciI	CCGC	1 cut(s)	827
AclWI	GGATC	2 cut(s)	624, 785
AcsI	RAATTY	1 cut(s)	772
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	2 cut(s)	434, 855
AfiI	CCNNNNNNNGG	3 cut(s)	208, 800, 833
AgsI	TTSAA	5 cut(s)	262, 331, 571, 626, 771
AjnI	CCWGG	2 cut(s)	747, 832
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	6 cut(s)	149, 156, 807, 843, 1016, 1055
AluI	AGCT	6 cut(s)	149, 156, 807, 843, 1016, 1055
AlwI	GGATC	2 cut(s)	624, 785
AlwNI	CAGNNNCTG	1 cut(s)	541
Ama87I	CYCGRG	1 cut(s)	105
AoxI	GGCC	1 cut(s)	970
ApeKI	GCWGC	7 cut(s)	59, 64, 156, 232, 807, 999, 1052
ApoI	RAATTY	1 cut(s)	772
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	836
AsuC2I	CCSGG	1 cut(s)	484
AsuHPI	GGTGA	2 cut(s)	516, 800
AvaI	CYCGRG	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	836
BaeGI	GKGCMC	2 cut(s)	957, 984
BanI	GGYRCC	1 cut(s)	954
BbsI	GAAGAC	2 cut(s)	537, 733
BbvI	GCAGC	7 cut(s)	46, 76, 143, 244, 794, 1011, 1064
BccI	CCATC	2 cut(s)	222, 944
BciT130I	CCWGG	2 cut(s)	749, 834
BcnI	CCSGG	1 cut(s)	484
BfaI	CTAG	2 cut(s)	20, 153
BfmI	CTRYAG	1 cut(s)	997
BisI	GCNGC	7 cut(s)	60, 65, 157, 233, 808, 1000, 1053
BlsI	GCNGC	7 cut(s)	61, 66, 158, 234, 809, 1001, 1054
Bme1390I	CCNGG	3 cut(s)	484, 749, 834
Bme18I	GGWCC	1 cut(s)	836
BmeT110I	CYCGRG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	836
BmiI	GGNNCC	1 cut(s)	956
BmrFI	CCNGG	3 cut(s)	484, 749, 834
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	537, 733
BpmI	CTGGAG	2 cut(s)	423, 1038
BpuMI	CCSGG	1 cut(s)	484
BsaJI	CCNNGG	3 cut(s)	735, 748, 973
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 800, 833
Bse1I	ACTGG	1 cut(s)	905
Bse3DI	GCAATG	1 cut(s)	817
BseBI	CCWGG	2 cut(s)	749, 834
BseDI	CCNNGG	3 cut(s)	735, 748, 973
BseGI	GGATG	1 cut(s)	856
BseLI	CCNNNNNNNGG	3 cut(s)	208, 800, 833
BseMI	GCAATG	1 cut(s)	817
BseMII	CTCAG	2 cut(s)	278, 1005
BseNI	ACTGG	1 cut(s)	905
BseRI	GAGGAG	1 cut(s)	295
BseSI	GKGCMC	2 cut(s)	957, 984
BseXI	GCAGC	7 cut(s)	46, 76, 143, 244, 794, 1011, 1064
BseYI	CCCAGC	1 cut(s)	494
BshFI	GGCC	1 cut(s)	972
BshNI	GGYRCC	1 cut(s)	954
BsiHKCI	CYCGRG	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	483, 597
BslFI	GGGAC	2 cut(s)	329, 499
BslI	CCNNNNNNNGG	3 cut(s)	208, 800, 833
BsmFI	GGGAC	2 cut(s)	329, 499
BsnI	GGCC	1 cut(s)	972
BsoBI	CYCGRG	1 cut(s)	105
Bsp1286I	GDGCHC	2 cut(s)	957, 984
Bsp1407I	TGTACA	1 cut(s)	853
Bsp143I	GATC	5 cut(s)	271, 564, 616, 763, 790
BspACI	CCGC	1 cut(s)	827
BspANI	GGCC	1 cut(s)	972
BspCNI	CTCAG	2 cut(s)	279, 1004
BspHI	TCATGA	2 cut(s)	121, 561
BspLI	GGNNCC	1 cut(s)	956
BspMAI	CTGCAG	1 cut(s)	1001
BspPI	GGATC	2 cut(s)	624, 785
BspQI	GCTCTTC	1 cut(s)	290
BspT107I	GGYRCC	1 cut(s)	954
BsrDI	GCAATG	1 cut(s)	817
BsrGI	TGTACA	1 cut(s)	853
BsrI	ACTGG	1 cut(s)	905
BssECI	CCNNGG	3 cut(s)	735, 748, 973
BssMI	GATC	5 cut(s)	271, 564, 616, 763, 790
BssT1I	CCWWGG	2 cut(s)	735, 973
Bst2UI	CCWGG	2 cut(s)	749, 834
Bst4CI	ACNGT	2 cut(s)	185, 543
Bst6I	CTCTTC	1 cut(s)	290
BstAPI	GCANNNNNTGC	1 cut(s)	1058
BstAUI	TGTACA	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	356, 609
BstDEI	CTNAG	3 cut(s)	287, 941, 991
BstF5I	GGATG	1 cut(s)	856
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	5 cut(s)	274, 567, 619, 766, 793
BstMBI	GATC	5 cut(s)	271, 564, 616, 763, 790
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 586, 1058
BstNI	CCWGG	2 cut(s)	749, 834
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	482, 747, 832
BstSFI	CTRYAG	1 cut(s)	997
BstSLI	GKGCMC	2 cut(s)	957, 984
BstV1I	GCAGC	7 cut(s)	46, 76, 143, 244, 794, 1011, 1064
BstV2I	GAAGAC	2 cut(s)	537, 733
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	972
BtsCI	GGATG	1 cut(s)	856
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	356, 609
CaiI	CAGNNNCTG	1 cut(s)	541
CciI	TCATGA	2 cut(s)	121, 561
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	836
Csp6I	GTAC	2 cut(s)	433, 854
CspCI	CAANNNNNGTGG	2 cut(s)	687, 722
CviQI	GTAC	2 cut(s)	433, 854
DdeI	CTNAG	3 cut(s)	287, 941, 991
DpnI	GATC	5 cut(s)	273, 566, 618, 765, 792
DpnII	GATC	5 cut(s)	271, 564, 616, 763, 790
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	735, 973
Eco47I	GGWCC	1 cut(s)	836
Eco57I	CTGAAG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	747, 832
EcoT14I	CCWWGG	2 cut(s)	735, 973
ErhI	CCWWGG	2 cut(s)	735, 973
FalI	AAGNNNNNCTT	2 cut(s)	728, 760
FaqI	GGGAC	2 cut(s)	329, 499
FauNDI	CATATG	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	7 cut(s)	60, 65, 157, 233, 808, 1000, 1053
FokI	GGATG	1 cut(s)	843
Fsp4HI	GCNGC	7 cut(s)	60, 65, 157, 233, 808, 1000, 1053
FspBI	CTAG	2 cut(s)	20, 153
FspI	TGCGCA	1 cut(s)	63
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	7 cut(s)	60, 65, 157, 233, 808, 1000, 1053
GsaI	CCCAGC	1 cut(s)	498
GsuI	CTGGAG	2 cut(s)	423, 1038
HaeIII	GGCC	1 cut(s)	972
HapII	CCGG	2 cut(s)	483, 597
HhaI	GCGC	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	6 cut(s)	128, 258, 317, 408, 501, 710
HpaII	CCGG	2 cut(s)	483, 597
HphI	GGTGA	2 cut(s)	516, 800
Hpy166II	GTNNAC	4 cut(s)	475, 546, 709, 721
Hpy188I	TCNGA	3 cut(s)	171, 781, 994
Hpy188III	TCNNGA	5 cut(s)	122, 402, 428, 562, 1025
Hpy8I	GTNNAC	4 cut(s)	475, 546, 709, 721
HpyAV	CCTTC	5 cut(s)	166, 172, 623, 643, 673
HpyCH4III	ACNGT	2 cut(s)	185, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 586, 1058
HpyF3I	CTNAG	3 cut(s)	287, 941, 991
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	5 cut(s)	271, 564, 616, 763, 790
LguI	GCTCTTC	1 cut(s)	290
Lsp1109I	GCAGC	7 cut(s)	46, 76, 143, 244, 794, 1011, 1064
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	20, 153
MaeIII	GTNAC	2 cut(s)	245, 922
MalI	GATC	5 cut(s)	273, 566, 618, 765, 792
MboI	GATC	5 cut(s)	271, 564, 616, 763, 790
MboII	GAAGA	8 cut(s)	307, 542, 559, 612, 638, 733, 736, 1034
MfeI	CAATTG	1 cut(s)	911
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	2 cut(s)	957, 984
MluCI	AATT	5 cut(s)	112, 267, 642, 772, 911
MlyI	GAGTC	4 cut(s)	311, 402, 510, 704
MmeI	TCCRAC	1 cut(s)	398
MseI	TTAA	2 cut(s)	180, 441
MslI	CAYNNNNRTG	2 cut(s)	353, 781
MspI	CCGG	2 cut(s)	483, 597
MspR9I	CCNGG	3 cut(s)	484, 749, 834
MunI	CAATTG	1 cut(s)	911
MvaI	CCWGG	2 cut(s)	749, 834
MwoI	GCNNNNNNNGC	3 cut(s)	59, 586, 1058
NciI	CCSGG	1 cut(s)	484
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	5 cut(s)	271, 564, 616, 763, 790
NlaIV	GGNNCC	1 cut(s)	956
NmuCI	GTSAC	1 cut(s)	922
NsbI	TGCGCA	1 cut(s)	63
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PagI	TCATGA	2 cut(s)	121, 561
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	2 cut(s)	128, 258
PkrI	GCNGC	7 cut(s)	61, 66, 158, 234, 809, 1001, 1054
PleI	GAGTC	4 cut(s)	311, 402, 509, 704
PpsI	GAGTC	4 cut(s)	311, 402, 509, 704
Psp6I	CCWGG	2 cut(s)	747, 832
PspFI	CCCAGC	1 cut(s)	494
PspGI	CCWGG	2 cut(s)	747, 832
PspN4I	GGNNCC	1 cut(s)	956
PspPI	GGNCC	1 cut(s)	836
PstI	CTGCAG	1 cut(s)	1001
PstNI	CAGNNNCTG	1 cut(s)	541
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	2 cut(s)	434, 855
RsaNI	GTAC	2 cut(s)	433, 854
RseI	CAYNNNNRTG	2 cut(s)	353, 781
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	180, 441
SatI	GCNGC	7 cut(s)	60, 65, 157, 233, 808, 1000, 1053
Sau3AI	GATC	5 cut(s)	271, 564, 616, 763, 790
Sau96I	GGNCC	1 cut(s)	836
SchI	GAGTC	4 cut(s)	311, 402, 510, 704
ScrFI	CCNGG	3 cut(s)	484, 749, 834
SduI	GDGCHC	2 cut(s)	957, 984
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	1 cut(s)	997
SinI	GGWCC	1 cut(s)	836
SmiMI	CAYNNNNRTG	2 cut(s)	353, 781
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	5 cut(s)	112, 267, 642, 772, 911
SsiI	CCGC	1 cut(s)	827
SspMI	CTAG	2 cut(s)	20, 153
StyD4I	CCNGG	3 cut(s)	482, 747, 832
StyI	CCWWGG	2 cut(s)	735, 973
TaaI	ACNGT	2 cut(s)	185, 543
TasI	AATT	5 cut(s)	112, 267, 642, 772, 911
TatI	WGTACW	2 cut(s)	432, 853
TfiI	GAWTC	2 cut(s)	128, 258
Tru1I	TTAA	2 cut(s)	180, 441
Tru9I	TTAA	2 cut(s)	180, 441
TscAI	CASTG	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	7 cut(s)	59, 64, 156, 232, 807, 999, 1052
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	6 cut(s)	110, 120, 154, 159, 350, 765
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	1 cut(s)	772
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	720
XspI	CTAG	2 cut(s)	20, 153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.