Rroxscaffold_2G00097140

Protein trichome birefringence-like 43

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000737
Physical Location & Seq
Reverse (-)
18412689 .. 18416744
4056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097140.1

Sequence Viewer

Length: 1257 bp
ATGGGTGCATTGGGAACTATTGCCATTGCACTTCTGGTGCTACCACTTCTACATGACCAAGTACATGGGAAGCATGCATATGAGAACTTGAACAAGTGTGATATTTACCAAGGAAGCTGGGTTTTTGACGATTCCTATCCTCTTTATGATTCAAGTCTCTGCAACTTCATACAGGAGGAGTTCGAGTGCCAACAAAATGGGCGACCCGACAAACACTATCTCAAATATAGATGGCAACCCTCTTCATGCATGTTACCAAGGTTTGATGGTGAAGATTTATTGGAGAGATTGAGAAATAAGCGCATCATGTTTGTTGGAGACTCGTTAAGTTTGAACCAGTGGCAATCTCTCACATGTATGCTTCATGCAGCCTCACCACAATCTAAGTACACTATTGAAAGAACAGGAAGCATCTCTACAATGACATTCCTGAGTCACAATGCTTCTTTGATGCTTGCACGCAATGCACTTCTTGTTGACATTGTAGAAGAAAGACAGGGGAGGGTTTTGAAGCTGGACTCCATTGATCATAAGGATCAGAAAGCATGGAAAGACATTGATATATTGATTTTCAACTCATGGCATTGGTGGCTCCACACAGGAAGGAAACAACCGTGGGATTTTATTCAAGATGGAGACAATTTACATGAAGACATAGATCGCCTTGTTGCTTATGAGAAAGCCTTAAAAACTTGGGCTCGATGGGTGGACAAAAATGTTGATCCGACTAAAACCAAAGTCTTCTTTCAAGGGATTTCACCCACTCATTGGAATTCAAGTTATTGGGGGTACCCTGAAGGGAAGAATTGCAGCAGGGAAACACAACCACTAATAGTGCCACCATACCCAAGAAGCCGTCACCCGGCAGAAGGGATTGTGGAAAAAGTATTGAGAGACATGTCAAAGCCGGTGGGTTTGCTCAATGTAACAGGACTGTCCCGGCTAAGGAAAGATGCACACCCATCCATATATGGCAACGGAGGGCACCGCGGCATGGACTGCAGCCACTGGTGTCTAGCTGGAGTTCCTGATACTTGGAACAGGCTGTTATACGCTGAAAGGATCAGATCAAGGGGTGGATATAATCATTCATGGAAATGGAAGAGGCTAGGGTATACCAATGACAATTGTCTTATGTCTCGACCCACAACGATGAATGCTTCACTTCAATGGTGTTTTGTATCACATATAAAATGCGGTCTACGAGCATATATGACATTGGATAGTTGGCAACGTGACAACTTTGGTGAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PC-Esterase PMR5N

Protein Analysis

418

Amino Acids

48.61

Weight (kDa)

8.65

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 32 - 83 5.1e-23 PMR5 N terminal Domain
PC-Esterase PF13839 85 - 352 5.8e-94 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 789
AccB1I GGYRCC 2 cut(s) 789, 984
AccB7I CCANNNNNTGG 1 cut(s) 768
AccI GTMKAC 2 cut(s) 1115, 1201
AccII CGCG 1 cut(s) 990
AciI CCGC 3 cut(s) 988, 990, 1197
AclI AACGTT 1 cut(s) 1252
AclWI GGATC 3 cut(s) 543, 716, 1070
AcsI RAATTY 1 cut(s) 772
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 3 cut(s) 63, 389, 791
AfiI CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
AflIII ACRYGT 2 cut(s) 353, 897
AluBI AGCT 3 cut(s) 117, 514, 1019
AluI AGCT 3 cut(s) 117, 514, 1019
Alw26I GTCTC 5 cut(s) 161, 312, 630, 888, 1143
AlwI GGATC 3 cut(s) 543, 716, 1070
AlwNI CAGNNNCTG 1 cut(s) 1008
ApeKI GCWGC 3 cut(s) 368, 810, 1002
ApoI RAATTY 1 cut(s) 772
Asp718I GGTACC 1 cut(s) 789
AspLEI GCGC 1 cut(s) 303
AsuC2I CCSGG 2 cut(s) 863, 940
AsuHPI GGTGA 4 cut(s) 281, 366, 750, 851
BaeGI GKGCMC 1 cut(s) 987
BanI GGYRCC 2 cut(s) 789, 984
BanII GRGCYC 1 cut(s) 700
BarI GAAGNNNNNNTAC 2 cut(s) 400, 432
BbsI GAAGAC 2 cut(s) 657, 733
BbvI GCAGC 3 cut(s) 380, 822, 1014
BccI CCATC 5 cut(s) 225, 260, 626, 696, 970
BceAI ACGGC 1 cut(s) 840
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 2 cut(s) 863, 940
BcoDI GTCTC 5 cut(s) 161, 312, 630, 888, 1143
BfaI CTAG 2 cut(s) 1016, 1109
BfmI CTRYAG 1 cut(s) 1000
BisI GCNGC 4 cut(s) 369, 811, 991, 1003
BlsI GCNGC 4 cut(s) 370, 812, 992, 1004
Bme1390I CCNGG 2 cut(s) 863, 940
BmiI GGNNCC 3 cut(s) 593, 791, 986
BmrFI CCNGG 2 cut(s) 863, 940
BmsI GCATC 4 cut(s) 312, 420, 441, 943
BoxI GACNNNNGTC 1 cut(s) 1128
BpiI GAAGAC 2 cut(s) 657, 733
BpmI CTGGAG 1 cut(s) 1041
Bpu10I CCTNAGC 1 cut(s) 944
BpuMI CCSGG 2 cut(s) 863, 940
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 4 cut(s) 109, 257, 614, 988
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 337, 1013
Bse3DI GCAATG 2 cut(s) 24, 469
Bse8I GATNNNNATC 1 cut(s) 135
BseDI CCNNGG 4 cut(s) 109, 257, 614, 988
BseGI GGATG 1 cut(s) 962
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
BseMI GCAATG 2 cut(s) 24, 469
BseMII CTCAG 1 cut(s) 422
BseNI ACTGG 2 cut(s) 337, 1013
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 987
BseXI GCAGC 3 cut(s) 380, 822, 1014
BseYI CCCAGC 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 990
BshNI GGYRCC 2 cut(s) 789, 984
BsiSI CCGG 3 cut(s) 863, 908, 940
BslFI GGGAC 1 cut(s) 922
BslI CCNNNNNNNGG 5 cut(s) 768, 862, 869, 945, 994
BsmAI GTCTC 5 cut(s) 161, 312, 630, 888, 1143
BsmFI GGGAC 1 cut(s) 922
BsmI GAATGC 1 cut(s) 1162
Bsp1286I GDGCHC 2 cut(s) 700, 987
Bsp143I GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
BspACI CCGC 3 cut(s) 988, 990, 1197
BspCNI CTCAG 1 cut(s) 423
BspFNI CGCG 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 593, 791, 986
BspMAI CTGCAG 1 cut(s) 1004
BspPI GGATC 3 cut(s) 543, 716, 1070
BspT107I GGYRCC 2 cut(s) 789, 984
BsrDI GCAATG 2 cut(s) 24, 469
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 2 cut(s) 337, 1013
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 109, 257, 614, 988
BssMI GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
BssNAI GTATAC 1 cut(s) 1116
BssT1I CCWWGG 2 cut(s) 109, 257
Bst1107I GTATAC 1 cut(s) 1116
Bst4CI ACNGT 2 cut(s) 615, 936
Bst6I CTCTTC 2 cut(s) 247, 1097
BstAPI GCANNNNNTGC 2 cut(s) 464, 999
BstC8I GCNNGC 3 cut(s) 75, 456, 460
BstDEI CTNAG 3 cut(s) 384, 431, 944
BstDSI CCRYGG 2 cut(s) 614, 988
BstF5I GGATG 1 cut(s) 962
BstFNI CGCG 1 cut(s) 990
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 6 cut(s) 529, 538, 661, 724, 1065, 1070
BstMAI GTCTC 5 cut(s) 161, 312, 630, 888, 1143
BstMBI GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
BstMWI GCNNNNNNNGC 3 cut(s) 464, 589, 999
BstNSI RCATGY 4 cut(s) 77, 253, 357, 901
BstPAI GACNNNNGTC 1 cut(s) 1128
BstSCI CCNGG 2 cut(s) 861, 938
BstSFI CTRYAG 1 cut(s) 1000
BstSLI GKGCMC 1 cut(s) 987
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 3 cut(s) 380, 822, 1014
BstV2I GAAGAC 2 cut(s) 657, 733
BstXI CCANNNNNNTGG 2 cut(s) 65, 197
BstZ17I GTATAC 1 cut(s) 1116
BtgI CCRYGG 2 cut(s) 614, 988
BtsCI GGATG 1 cut(s) 962
BtsIMutI CAGTG 2 cut(s) 344, 1006
Cac8I GCNNGC 3 cut(s) 75, 456, 460
CaiI CAGNNNCTG 1 cut(s) 1008
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 907
Cfr42I CCGCGG 1 cut(s) 991
Csp6I GTAC 3 cut(s) 62, 388, 790
CspCI CAANNNNNGTGG 2 cut(s) 891, 926
CviQI GTAC 3 cut(s) 62, 388, 790
DdeI CTNAG 3 cut(s) 384, 431, 944
DpnI GATC 6 cut(s) 528, 537, 660, 723, 1064, 1069
DpnII GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
Eam1104I CTCTTC 2 cut(s) 247, 1097
EarI CTCTTC 2 cut(s) 247, 1097
Eco130I CCWWGG 2 cut(s) 109, 257
Eco24I GRGCYC 1 cut(s) 700
Eco57I CTGAAG 1 cut(s) 816
EcoRI GAATTC 1 cut(s) 772
EcoT14I CCWWGG 2 cut(s) 109, 257
EcoT22I ATGCAT 2 cut(s) 79, 251
EcoT38I GRGCYC 1 cut(s) 700
ErhI CCWWGG 2 cut(s) 109, 257
FaqI GGGAC 1 cut(s) 922
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 2 cut(s) 1115, 1201
Fnu4HI GCNGC 4 cut(s) 369, 811, 991, 1003
FokI GGATG 1 cut(s) 949
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 4 cut(s) 369, 811, 991, 1003
FspBI CTAG 2 cut(s) 1016, 1109
GlaI GCGC 1 cut(s) 302
GluI GCNGC 4 cut(s) 369, 811, 991, 1003
GsaI CCCAGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 1041
HapII CCGG 3 cut(s) 863, 908, 940
HhaI GCGC 1 cut(s) 303
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 5 cut(s) 131, 149, 320, 433, 518
HpaII CCGG 3 cut(s) 863, 908, 940
HphI GGTGA 4 cut(s) 281, 366, 750, 851
Hpy166II GTNNAC 6 cut(s) 390, 478, 709, 1116, 1202, 1250
Hpy188I TCNGA 3 cut(s) 540, 726, 1067
Hpy188III TCNNGA 4 cut(s) 430, 629, 1028, 1140
Hpy8I GTNNAC 6 cut(s) 390, 478, 709, 1116, 1202, 1250
HpyAV CCTTC 3 cut(s) 597, 791, 863
HpyCH4III ACNGT 2 cut(s) 615, 936
HpyCH4IV ACGT 2 cut(s) 1234, 1252
HpyF10VI GCNNNNNNNGC 3 cut(s) 464, 589, 999
HpyF3I CTNAG 3 cut(s) 384, 431, 944
HpySE526I ACGT 2 cut(s) 1234, 1252
HspAI GCGC 1 cut(s) 301
KpnI GGTACC 1 cut(s) 793
Ksp22I TGATCA 1 cut(s) 526
KspI CCGCGG 1 cut(s) 991
Kzo9I GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
LmnI GCTCC 1 cut(s) 597
Lsp1109I GCAGC 3 cut(s) 380, 822, 1014
LweI GCATC 4 cut(s) 312, 420, 441, 943
MaeI CTAG 2 cut(s) 1016, 1109
MaeII ACGT 2 cut(s) 1234, 1252
MaeIII GTNAC 5 cut(s) 252, 434, 857, 925, 1235
MalI GATC 6 cut(s) 528, 537, 660, 723, 1064, 1069
MboI GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
MboII GAAGA 7 cut(s) 234, 284, 500, 662, 733, 814, 1114
MfeI CAATTG 1 cut(s) 1126
MhlI GDGCHC 2 cut(s) 700, 987
MluCI AATT 4 cut(s) 640, 772, 805, 1126
MlyI GAGTC 3 cut(s) 314, 442, 512
MmeI TCCRAC 2 cut(s) 295, 749
MnlI CCTC 7 cut(s) 150, 169, 250, 382, 495, 974, 1098
Mph1103I ATGCAT 2 cut(s) 79, 251
MseI TTAA 2 cut(s) 326, 686
MslI CAYNNNNRTG 5 cut(s) 78, 356, 1096, 1151, 1168
MspA1I CMGCKG 1 cut(s) 990
MspI CCGG 3 cut(s) 863, 908, 940
MspR9I CCNGG 2 cut(s) 863, 940
MunI CAATTG 1 cut(s) 1126
Mva1269I GAATGC 1 cut(s) 1162
MvnI CGCG 1 cut(s) 990
MwoI GCNNNNNNNGC 3 cut(s) 464, 589, 999
NciI CCSGG 2 cut(s) 863, 940
NdeI CATATG 1 cut(s) 79
NdeII GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
NlaIV GGNNCC 3 cut(s) 593, 791, 986
NmuCI GTSAC 3 cut(s) 434, 857, 1235
NsiI ATGCAT 2 cut(s) 79, 251
NspI RCATGY 4 cut(s) 77, 253, 357, 901
PaeI GCATGC 1 cut(s) 77
PciI ACATGT 2 cut(s) 353, 897
PctI GAATGC 1 cut(s) 1162
PfeI GAWTC 2 cut(s) 131, 149
PflMI CCANNNNNTGG 1 cut(s) 768
PkrI GCNGC 4 cut(s) 370, 812, 992, 1004
PleI GAGTC 3 cut(s) 314, 441, 512
PpsI GAGTC 3 cut(s) 314, 441, 512
PscI ACATGT 2 cut(s) 353, 897
PshAI GACNNNNGTC 1 cut(s) 1128
Psp1406I AACGTT 1 cut(s) 1252
PspFI CCCAGC 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 593, 791, 986
PstI CTGCAG 1 cut(s) 1004
PstNI CAGNNNCTG 1 cut(s) 1008
RsaI GTAC 3 cut(s) 63, 389, 791
RsaNI GTAC 3 cut(s) 62, 388, 790
RseI CAYNNNNRTG 5 cut(s) 78, 356, 1096, 1151, 1168
SacII CCGCGG 1 cut(s) 991
SaqAI TTAA 2 cut(s) 326, 686
SatI GCNGC 4 cut(s) 369, 811, 991, 1003
Sau3AI GATC 6 cut(s) 526, 535, 658, 721, 1062, 1067
SchI GAGTC 3 cut(s) 314, 442, 512
ScrFI CCNGG 2 cut(s) 863, 940
SduI GDGCHC 2 cut(s) 700, 987
SetI ASST 6 cut(s) 119, 263, 516, 1021, 1237, 1255
SfaNI GCATC 4 cut(s) 312, 420, 441, 943
SfcI CTRYAG 1 cut(s) 1000
Sfr303I CCGCGG 1 cut(s) 991
SgrBI CCGCGG 1 cut(s) 991
SmiMI CAYNNNNRTG 5 cut(s) 78, 356, 1096, 1151, 1168
SphI GCATGC 1 cut(s) 77
Sse9I AATT 4 cut(s) 640, 772, 805, 1126
SsiI CCGC 3 cut(s) 988, 990, 1197
SspMI CTAG 2 cut(s) 1016, 1109
StyD4I CCNGG 2 cut(s) 861, 938
StyI CCWWGG 2 cut(s) 109, 257
TaaI ACNGT 2 cut(s) 615, 936
TaiI ACGT 2 cut(s) 1237, 1255
TaqI TCGA 3 cut(s) 183, 700, 1141
TasI AATT 4 cut(s) 640, 772, 805, 1126
TatI WGTACW 2 cut(s) 61, 387
TauI GCSGC 1 cut(s) 993
TfiI GAWTC 2 cut(s) 131, 149
Tru1I TTAA 2 cut(s) 326, 686
Tru9I TTAA 2 cut(s) 326, 686
TscAI CASTG 2 cut(s) 344, 1013
TseFI GTSAC 3 cut(s) 434, 857, 1235
TseI GCWGC 3 cut(s) 368, 810, 1002
Tsp45I GTSAC 3 cut(s) 434, 857, 1235
TspDTI ATGAA 6 cut(s) 157, 234, 353, 663, 1080, 1169
TspGWI ACGGA 1 cut(s) 993
TspRI CASTG 2 cut(s) 344, 1013
Van91I CCANNNNNTGG 1 cut(s) 768
XapI RAATTY 1 cut(s) 772
XceI RCATGY 4 cut(s) 77, 253, 357, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 31
XmiI GTMKAC 2 cut(s) 1115, 1201
XspI CTAG 2 cut(s) 1016, 1109
Zsp2I ATGCAT 2 cut(s) 79, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.