Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043021.1

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1495

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 623 bp

atgcttgacggtagggaccaacttggaggaaatttggagttcagggacttttcaggtaaaattcaaagatcagggactgaaacgatgaaatcctataagtatagggaattcaatggaattgatcttttgaggaggctaagggggaagaacatcatgtttattggggactcattgagtctgaaccaatggcaatcactcgcttgcttgcttcatacggctgttccaactgccaaatacacatcggtcaggtctggagaactctccacattcacatttccggaatacaatgttaaggtgttgttctcccgcaacccctttctggtggacattgtcagcacaagttctgggcgagtcctcaaacttgactcaatctcacttgaaaaccagaaactgtggacaggagttgacatcatgatcttcaacacatggcattggtggcttcataccggaagaaagcaagcatgggaccttatcgaagaagggggcaaaataattgggaaggacatggataggttggttgcctatgagaaggctctcaacacttgggcaacatgggtagactcccaagtggaccccgcaagaaccaaggtcttcttccagggtgtttccccagatcattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

207

Amino Acids

23.74

Weight (kDa)

8.97

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	558
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	2 cut(s)	307, 576
AcsI	RAATTY	3 cut(s)	31, 60, 107
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	4 cut(s)	65, 112, 380, 421
AjnI	CCWGG	1 cut(s)	597
AjuI	GAANNNNNNNTTGG	2 cut(s)	578, 610
AlwNI	CAGNNNCTG	2 cut(s)	77, 391
Aor13HI	TCCGGA	1 cut(s)	277
ApoI	RAATTY	3 cut(s)	31, 60, 107
AspS9I	GGNCC	3 cut(s)	16, 466, 571
AvaII	GGWCC	3 cut(s)	16, 466, 571
BbsI	GAAGAC	1 cut(s)	583
BceAI	ACGGC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	599
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	3 cut(s)	16, 466, 571
BmgT120I	GGNCC	3 cut(s)	16, 466, 571
BmiI	GGNNCC	3 cut(s)	17, 467, 573
BmrFI	CCNGG	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	583
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	585, 598
BsaWI	WCCGGW	2 cut(s)	277, 446
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	585, 598
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	278, 447
BslFI	GGGAC	5 cut(s)	29, 59, 88, 179, 479
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmFI	GGGAC	5 cut(s)	29, 59, 88, 179, 479
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	4 cut(s)	68, 121, 414, 613
BspACI	CCGC	2 cut(s)	307, 576
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	17, 467, 573
BssECI	CCNNGG	2 cut(s)	585, 598
BssMI	GATC	4 cut(s)	68, 121, 414, 613
BssT1I	CCWWGG	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	2 cut(s)	11, 393
BstC8I	GCNNGC	3 cut(s)	202, 206, 459
BstDEI	CTNAG	1 cut(s)	137
BstKTI	GATC	4 cut(s)	71, 124, 417, 616
BstMBI	GATC	4 cut(s)	68, 121, 414, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	583
Cac8I	GCNNGC	3 cut(s)	202, 206, 459
CaiI	CAGNNNCTG	2 cut(s)	77, 391
CciI	TCATGA	1 cut(s)	411
Cfr13I	GGNCC	3 cut(s)	16, 466, 571
CviAII	CATG	6 cut(s)	154, 412, 426, 462, 505, 552
CviJI	RGCY	4 cut(s)	136, 218, 439, 533
CviKI_1	RGCY	4 cut(s)	136, 218, 439, 533
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	4 cut(s)	70, 123, 416, 615
DpnII	GATC	4 cut(s)	68, 121, 414, 613
Eco130I	CCWWGG	1 cut(s)	585
Eco47I	GGWCC	3 cut(s)	16, 466, 571
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	585
FaeI	CATG	6 cut(s)	157, 415, 429, 465, 508, 555
FalI	AAGNNNNNCTT	2 cut(s)	578, 610
FaqI	GGGAC	5 cut(s)	29, 59, 88, 179, 479
FatI	CATG	6 cut(s)	153, 411, 425, 461, 504, 551
FauI	CCCGC	2 cut(s)	314, 583
FblI	GTMKAC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	273
HapII	CCGG	2 cut(s)	278, 447
Hin1II	CATG	6 cut(s)	157, 415, 429, 465, 508, 555
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	167, 175, 351, 365, 560
HpaII	CCGG	2 cut(s)	278, 447
Hpy166II	GTNNAC	5 cut(s)	325, 396, 406, 559, 571
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	3 cut(s)	252, 278, 412
Hpy8I	GTNNAC	5 cut(s)	325, 396, 406, 559, 571
HpyAV	CCTTC	3 cut(s)	473, 493, 523
HpyCH4III	ACNGT	2 cut(s)	11, 393
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	6 cut(s)	157, 415, 429, 465, 508, 555
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	68, 121, 414, 613
MalI	GATC	4 cut(s)	70, 123, 416, 615
MboI	GATC	4 cut(s)	68, 121, 414, 613
MboII	GAAGA	6 cut(s)	157, 409, 462, 488, 583, 586
MluCI	AATT	5 cut(s)	31, 60, 107, 117, 492
MlyI	GAGTC	5 cut(s)	161, 184, 359, 360, 554
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	4 cut(s)	20, 123, 126, 365
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	1 cut(s)	291
MspI	CCGG	2 cut(s)	278, 447
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	4 cut(s)	68, 121, 414, 613
NlaIII	CATG	6 cut(s)	157, 415, 429, 465, 508, 555
NlaIV	GGNNCC	3 cut(s)	17, 467, 573
PagI	TCATGA	1 cut(s)	411
PflFI	GACNNNGTC	1 cut(s)	329
PleI	GAGTC	5 cut(s)	161, 183, 359, 359, 554
PpsI	GAGTC	5 cut(s)	161, 183, 359, 359, 554
PpuMI	RGGWCCY	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	3 cut(s)	17, 467, 573
PspPI	GGNCC	3 cut(s)	16, 466, 571
PspPPI	RGGWCCY	1 cut(s)	466
PstNI	CAGNNNCTG	2 cut(s)	77, 391
PsyI	GACNNNGTC	1 cut(s)	329
SaqAI	TTAA	1 cut(s)	291
Sau3AI	GATC	4 cut(s)	68, 121, 414, 613
Sau96I	GGNCC	3 cut(s)	16, 466, 571
SchI	GAGTC	5 cut(s)	161, 184, 359, 360, 554
ScrFI	CCNGG	1 cut(s)	599
SetI	ASST	6 cut(s)	58, 251, 297, 471, 515, 591
SinI	GGWCC	3 cut(s)	16, 466, 571
Sse9I	AATT	5 cut(s)	31, 60, 107, 117, 492
SsiI	CCGC	2 cut(s)	307, 576
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	11, 393
TaqI	TCGA	1 cut(s)	474
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	5 cut(s)	31, 60, 107, 117, 492
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TspDTI	ATGAA	3 cut(s)	101, 200, 431
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	3 cut(s)	16, 466, 571
XapI	RAATTY	3 cut(s)	31, 60, 107
XmiI	GTMKAC	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.