Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

15030667 .. 15031289

Gene Structure 623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGTTGCAGATGGGATTTAATTCAAGTGCGGAATCAAACTTACAATGACATGGATCGGTTGGGTGCATATGAGAAGGCGTTGACCACTTGGGCTGGATGGGTTGACTCCAAAGTGGACTCCAACAAAACCAAGGTCTTCTTCCAAGGTGTTTCTCCAGATCATAGCAATGCAACAGAGTGGGGTGATCCTCAAGCAATTAACTGCAATGCACAAACAGAACCACTGCCAGGCCCAGACTTTCCAGGAAAACCACATCCAGCAGAGCAAGTACTAGAGAAAGTGTTACGCACCGCGTCAAGGCCGGTCTATTTGCTCAATATTACAACTCTTTCGCAACTACGAAAGGATGCGCACCCGTCGGTCTATGGCCTCGGCGGGCACCGGGGCATGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAATGTGCTTCTTCATGCAGCTCTTACTCAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

157

Amino Acids

17.4

Weight (kDa)

6.27

Isoelectric Point (pI)

28.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	4 - 151	3.9e-46	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	381
AccII	CGCG	1 cut(s)	296
AciI	CCGC	3 cut(s)	31, 294, 378
AclWI	GGATC	2 cut(s)	63, 182
AfaI	GTAC	1 cut(s)	273
AfiI	CCNNNNNNNGG	3 cut(s)	230, 300, 391
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	229, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	2 cut(s)	416, 455
AluI	AGCT	2 cut(s)	416, 455
AlwI	GGATC	2 cut(s)	63, 182
AoxI	GGCC	3 cut(s)	232, 302, 370
ApeKI	GCWGC	2 cut(s)	399, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	233
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	411, 464
BccI	CCATC	2 cut(s)	6, 93
BciT130I	CCWGG	2 cut(s)	231, 246
BcnI	CCSGG	1 cut(s)	386
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	397
BisI	GCNGC	2 cut(s)	400, 453
BlsI	GCNGC	2 cut(s)	401, 454
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	3 cut(s)	231, 246, 386
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	383
BmrFI	CCNGG	3 cut(s)	231, 246, 386
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	2 cut(s)	141, 438
BpuEI	CTTGAG	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	132, 145, 373, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 300, 391
Bse118I	RCCGGY	1 cut(s)	304
Bse3DI	GCAATG	2 cut(s)	175, 214
BseBI	CCWGG	2 cut(s)	231, 246
BseDI	CCNNGG	4 cut(s)	132, 145, 373, 385
BseGI	GGATG	3 cut(s)	104, 256, 355
BseLI	CCNNNNNNNGG	3 cut(s)	230, 300, 391
BseMI	GCAATG	2 cut(s)	175, 214
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	411, 464
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	3 cut(s)	234, 304, 372
BshNI	GGYRCC	1 cut(s)	381
BsiSI	CCGG	2 cut(s)	305, 385
BslI	CCNNNNNNNGG	3 cut(s)	230, 300, 391
BsnI	GGCC	3 cut(s)	234, 304, 372
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	55, 160, 187
BspACI	CCGC	3 cut(s)	31, 294, 378
BspANI	GGCC	3 cut(s)	234, 304, 372
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	383
BspMAI	CTGCAG	1 cut(s)	401
BspPI	GGATC	2 cut(s)	63, 182
BspT107I	GGYRCC	1 cut(s)	381
BsrDI	GCAATG	2 cut(s)	175, 214
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	4 cut(s)	132, 145, 373, 385
BssMI	GATC	3 cut(s)	55, 160, 187
BssT1I	CCWWGG	2 cut(s)	132, 145
Bst2UI	CCWGG	2 cut(s)	231, 246
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	104, 256, 355
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	58, 163, 190
BstMBI	GATC	3 cut(s)	55, 160, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	2 cut(s)	231, 246
BstSCI	CCNGG	3 cut(s)	229, 244, 384
BstSFI	CTRYAG	1 cut(s)	397
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	411, 464
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	234, 304, 372
BtsCI	GGATG	3 cut(s)	104, 256, 355
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	1 cut(s)	380
CfoI	GCGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	233
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	272
CviAII	CATG	3 cut(s)	52, 391, 449
CviJI	RGCY	7 cut(s)	95, 234, 304, 372, 402, 416, 455
CviKI_1	RGCY	7 cut(s)	95, 234, 304, 372, 402, 416, 455
CviQI	GTAC	1 cut(s)	272
DpnI	GATC	3 cut(s)	57, 162, 189
DpnII	GATC	3 cut(s)	55, 160, 187
Eco130I	CCWWGG	2 cut(s)	132, 145
EcoRII	CCWGG	2 cut(s)	229, 244
EcoT14I	CCWWGG	2 cut(s)	132, 145
ErhI	CCWWGG	2 cut(s)	132, 145
FaeI	CATG	3 cut(s)	55, 394, 452
FaiI	YATR	7 cut(s)	53, 70, 72, 165, 369, 392, 450
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	3 cut(s)	51, 390, 448
FauI	CCCGC	1 cut(s)	371
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	400, 453
FokI	GGATG	3 cut(s)	111, 243, 362
Fsp4HI	GCNGC	2 cut(s)	400, 453
FspAI	RTGCGCAY	1 cut(s)	354
FspBI	CTAG	1 cut(s)	275
FspI	TGCGCA	1 cut(s)	354
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	2 cut(s)	400, 453
GsuI	CTGGAG	2 cut(s)	141, 438
HaeIII	GGCC	3 cut(s)	234, 304, 372
HapII	CCGG	2 cut(s)	305, 385
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	55, 394, 452
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	84, 106
HindII	GTYRAC	2 cut(s)	84, 106
HinfI	GANTC	3 cut(s)	34, 107, 119
HpaII	CCGG	2 cut(s)	305, 385
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	84, 106, 118
Hpy188III	TCNNGA	2 cut(s)	158, 425
Hpy8I	GTNNAC	3 cut(s)	84, 106, 118
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	7 cut(s)	9, 68, 173, 207, 212, 399, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
Hsp92II	CATG	3 cut(s)	55, 394, 452
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	55, 160, 187
Lsp1109I	GCAGC	2 cut(s)	411, 464
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	3 cut(s)	57, 162, 189
MboI	GATC	3 cut(s)	55, 160, 187
MboII	GAAGA	3 cut(s)	130, 133, 437
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	21, 198, 466
MlyI	GAGTC	2 cut(s)	101, 113
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	201, 383
MseI	TTAA	2 cut(s)	20, 201
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	2 cut(s)	305, 385
MspR9I	CCNGG	3 cut(s)	231, 246, 386
MvaI	CCWGG	2 cut(s)	231, 246
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	396
NciI	CCSGG	1 cut(s)	386
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	55, 160, 187
NlaIII	CATG	3 cut(s)	55, 394, 452
NlaIV	GGNNCC	1 cut(s)	383
NmeAIII	GCCGAG	1 cut(s)	354
NsbI	TGCGCA	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	401, 454
PleI	GAGTC	2 cut(s)	101, 113
PpsI	GAGTC	2 cut(s)	101, 113
Psp6I	CCWGG	2 cut(s)	229, 244
PspGI	CCWGG	2 cut(s)	229, 244
PspN4I	GGNNCC	1 cut(s)	383
PspPI	GGNCC	1 cut(s)	233
PstI	CTGCAG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	273
RsaNI	GTAC	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	20, 201
SatI	GCNGC	2 cut(s)	400, 453
Sau3AI	GATC	3 cut(s)	55, 160, 187
Sau96I	GGNCC	1 cut(s)	233
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	2 cut(s)	101, 113
ScrFI	CCNGG	3 cut(s)	231, 246, 386
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	4 cut(s)	138, 151, 418, 457
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	3 cut(s)	21, 198, 466
SsiI	CCGC	3 cut(s)	31, 294, 378
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	3 cut(s)	229, 244, 384
StyI	CCWWGG	2 cut(s)	132, 145
TaqII	GACCGA	1 cut(s)	352
TasI	AATT	3 cut(s)	21, 198, 466
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	20, 201
Tru9I	TTAA	2 cut(s)	20, 201
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	2 cut(s)	399, 452
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	231
XspI	CTAG	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.