Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

38438622 .. 38442506

Gene Structure 3885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00112980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGATGGTTTTGCAGTACTGGTAGTGCTGGTAGTGGTTTCTGTTGTGCAGCAACAAGTGCATGGGATTGGGGGATGTGATGTTTCTCGTGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAGCTGCCCCTTCATTGAGAAGGAGTTTGACTGTATAAAGAATGGTCGCCCAGACAAGGACTATCTCAAATACAGATGGCAGCCTCTTGGCTGCAACTTAACAAGATTCAATGGAATTGATCTTTTGAGGAGGCTAAGAGGGAAGAGCATCATGTTTATTGGGGACTCATTGAGTCTGAACCAATGGCAATCACTCACTTGCTTGCTTCATACGGCTGTTCCAACTGCCAAATACACATTGGTCAGGTCTGGAGGACTCTCCGCATTCACATTTCCGGAATACAATGTTAAGGTGTTGTTCTCCCGCAACGCCTTTCTCGTGGACATTATCAGCACAAGTGCTGGGCGAGTCCTAAAACTTGACTCAATCTCGCTTGAAAACCAGAAACTGTGGACAGGAGTTGACGTCATGATCTTCAACACATGGCATTGGTGGCTTCATACCGGAAGAAAGCAAGCATGGGATCTTATCGAAGAAGGGGGCAAAATAATTGGGAAGGACATGGATAGGTTGGTTGCCTATGAGAAGGCTCTCAACACTTGGGCAACATGGGTAGACTCCCAAGTGGACCCTGCAAGAACCAAGGTCTTCTTCCAGGGTGTTTCCCCAGATCATTCTAATTCATCAGACTGGAGTGATCCAAAAGCAGGAAGCTGCAATGGACAAACAGAACCACTTCCAGGTCCAAGCTATCCTCATGTACATCCAGCAGAGAAAGTAGTAGAGAAAGTATTACGCGCCATGCCAAAGCCAGTCCAATTGCTTGATGTCACAAATCTTTCACAACTAAGAAAAGATGGGCACCCCTCTTTCTATGGCCTTGGTGGGCACAGAGCCTCGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAACATTCTTCTTTATGCAGCTCTTGCAGGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

350

Amino Acids

39.11

Weight (kDa)

7.15

Isoelectric Point (pI)

34.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	25 - 77	1.8e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	78 - 345	6.4e-91	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	936
AccI	GTMKAC	1 cut(s)	690
AccII	CGCG	1 cut(s)	873
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	2 cut(s)	396, 439
AclWI	GGATC	2 cut(s)	606, 767
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	2 cut(s)	18, 837
AfiI	CCNNNNNNNGG	3 cut(s)	190, 782, 815
AgsI	TTSAA	3 cut(s)	244, 512, 553
AjnI	CCWGG	2 cut(s)	729, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	710, 742
AluBI	AGCT	6 cut(s)	131, 138, 789, 825, 998, 1037
AluI	AGCT	6 cut(s)	131, 138, 789, 825, 998, 1037
AlwI	GGATC	2 cut(s)	606, 767
AlwNI	CAGNNNCTG	1 cut(s)	523
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	1 cut(s)	952
ApeKI	GCWGC	7 cut(s)	49, 138, 214, 225, 789, 981, 1034
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	1 cut(s)	875
AspS9I	GGNCC	2 cut(s)	703, 818
AvaII	GGWCC	2 cut(s)	703, 818
BaeGI	GKGCMC	2 cut(s)	939, 966
BanI	GGYRCC	1 cut(s)	936
BauI	CACGAG	2 cut(s)	87, 452
BbsI	GAAGAC	1 cut(s)	715
BbvI	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
BccI	CCATC	2 cut(s)	204, 926
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	2 cut(s)	731, 816
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	979
BisI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
BlsI	GCNGC	7 cut(s)	51, 140, 216, 227, 791, 983, 1036
BmcAI	AGTACT	1 cut(s)	18
Bme1390I	CCNGG	2 cut(s)	731, 816
Bme18I	GGWCC	2 cut(s)	703, 818
BmgT120I	GGNCC	2 cut(s)	703, 818
BmiI	GGNNCC	2 cut(s)	705, 938
BmrFI	CCNGG	2 cut(s)	731, 816
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	715
BpmI	CTGGAG	3 cut(s)	405, 787, 1020
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	717, 730, 955, 972
BsaWI	WCCGGW	2 cut(s)	409, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 782, 815
Bse1I	ACTGG	3 cut(s)	24, 770, 887
Bse3DI	GCAATG	1 cut(s)	799
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	731, 816
BseDI	CCNNGG	4 cut(s)	717, 730, 955, 972
BseGI	GGATG	3 cut(s)	10, 80, 838
BseLI	CCNNNNNNNGG	3 cut(s)	190, 782, 815
BseMI	GCAATG	1 cut(s)	799
BseNI	ACTGG	3 cut(s)	24, 770, 887
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	2 cut(s)	939, 966
BseXI	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	68
Bsh1236I	CGCG	1 cut(s)	873
BshFI	GGCC	1 cut(s)	954
BshNI	GGYRCC	1 cut(s)	936
BsiSI	CCGG	2 cut(s)	410, 579
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	190, 782, 815
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	954
Bsp1286I	GDGCHC	2 cut(s)	939, 966
Bsp13I	TCCGGA	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	253, 546, 598, 745, 772
BspACI	CCGC	2 cut(s)	396, 439
BspANI	GGCC	1 cut(s)	954
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	1 cut(s)	873
BspHI	TCATGA	2 cut(s)	103, 543
BspLI	GGNNCC	2 cut(s)	705, 938
BspMAI	CTGCAG	1 cut(s)	983
BspPI	GGATC	2 cut(s)	606, 767
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	936
BsrDI	GCAATG	1 cut(s)	799
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	3 cut(s)	24, 770, 887
BssECI	CCNNGG	4 cut(s)	717, 730, 955, 972
BssMI	GATC	5 cut(s)	253, 546, 598, 745, 772
BssNI	GRCGYC	1 cut(s)	540
BssSI	CACGAG	2 cut(s)	87, 452
BssT1I	CCWWGG	2 cut(s)	717, 955
Bst2BI	CACGAG	2 cut(s)	87, 452
Bst2UI	CCWGG	2 cut(s)	731, 816
Bst4CI	ACNGT	2 cut(s)	167, 525
Bst6I	CTCTTC	1 cut(s)	272
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	58, 1040
BstAUI	TGTACA	1 cut(s)	835
BstC8I	GCNNGC	2 cut(s)	338, 591
BstDEI	CTNAG	2 cut(s)	269, 923
BstF5I	GGATG	3 cut(s)	10, 80, 838
BstFNI	CGCG	1 cut(s)	873
BstHHI	GCGC	1 cut(s)	875
BstKTI	GATC	5 cut(s)	256, 549, 601, 748, 775
BstMBI	GATC	5 cut(s)	253, 546, 598, 745, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 568, 1040
BstNI	CCWGG	2 cut(s)	731, 816
BstSCI	CCNGG	2 cut(s)	729, 814
BstSFI	CTRYAG	1 cut(s)	979
BstSLI	GKGCMC	2 cut(s)	939, 966
BstUI	CGCG	1 cut(s)	873
BstV1I	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	10, 80, 838
Cac8I	GCNNGC	2 cut(s)	338, 591
CaiI	CAGNNNCTG	1 cut(s)	523
CciI	TCATGA	2 cut(s)	103, 543
CfoI	GCGC	1 cut(s)	875
Cfr13I	GGNCC	2 cut(s)	703, 818
Csp6I	GTAC	2 cut(s)	17, 836
CviQI	GTAC	2 cut(s)	17, 836
DdeI	CTNAG	2 cut(s)	269, 923
DpnI	GATC	5 cut(s)	255, 548, 600, 747, 774
DpnII	GATC	5 cut(s)	253, 546, 598, 745, 772
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco130I	CCWWGG	2 cut(s)	717, 955
Eco47I	GGWCC	2 cut(s)	703, 818
EcoRII	CCWGG	2 cut(s)	729, 814
EcoT14I	CCWWGG	2 cut(s)	717, 955
ErhI	CCWWGG	2 cut(s)	717, 955
FalI	AAGNNNNNCTT	2 cut(s)	710, 742
FaqI	GGGAC	1 cut(s)	311
FauI	CCCGC	1 cut(s)	446
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
FokI	GGATG	3 cut(s)	17, 87, 825
Fsp4HI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
FspBI	CTAG	1 cut(s)	135
GlaI	GCGC	1 cut(s)	874
GluI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	3 cut(s)	405, 787, 1020
HaeIII	GGCC	1 cut(s)	954
HapII	CCGG	2 cut(s)	410, 579
HhaI	GCGC	1 cut(s)	875
Hin1I	GRCGYC	1 cut(s)	540
Hin6I	GCGC	1 cut(s)	873
HinP1I	GCGC	1 cut(s)	873
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	129
HinfI	GANTC	8 cut(s)	110, 240, 299, 307, 390, 483, 497, 692
HpaII	CCGG	2 cut(s)	410, 579
Hpy166II	GTNNAC	5 cut(s)	457, 528, 538, 691, 703
Hpy188I	TCNGA	3 cut(s)	312, 763, 976
Hpy188III	TCNNGA	5 cut(s)	104, 384, 410, 544, 1007
Hpy8I	GTNNAC	5 cut(s)	457, 528, 538, 691, 703
HpyAV	CCTTC	5 cut(s)	148, 154, 605, 625, 655
HpyCH4III	ACNGT	2 cut(s)	167, 525
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	9 cut(s)	14, 49, 61, 228, 710, 792, 981, 1034, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 568, 1040
HpyF3I	CTNAG	2 cut(s)	269, 923
HpySE526I	ACGT	1 cut(s)	540
Hsp92I	GRCGYC	1 cut(s)	540
HspAI	GCGC	1 cut(s)	873
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	253, 546, 598, 745, 772
LguI	GCTCTTC	1 cut(s)	272
Lsp1109I	GCAGC	7 cut(s)	61, 125, 212, 226, 776, 993, 1046
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	135
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	5 cut(s)	255, 548, 600, 747, 774
MboI	GATC	5 cut(s)	253, 546, 598, 745, 772
MboII	GAAGA	7 cut(s)	289, 541, 594, 620, 715, 718, 1016
MfeI	CAATTG	1 cut(s)	893
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	2 cut(s)	939, 966
MluCI	AATT	5 cut(s)	94, 249, 624, 754, 893
MlyI	GAGTC	6 cut(s)	293, 316, 384, 491, 492, 686
MmeI	TCCRAC	1 cut(s)	380
MnlI	CCTC	9 cut(s)	129, 228, 255, 258, 266, 380, 840, 952, 982
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	810
MseI	TTAA	3 cut(s)	233, 423, 1051
MspI	CCGG	2 cut(s)	410, 579
MspR9I	CCNGG	2 cut(s)	731, 816
MunI	CAATTG	1 cut(s)	893
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	2 cut(s)	731, 816
MvnI	CGCG	1 cut(s)	873
MwoI	GCNNNNNNNGC	3 cut(s)	58, 568, 1040
NdeII	GATC	5 cut(s)	253, 546, 598, 745, 772
NlaIV	GGNNCC	2 cut(s)	705, 938
NmuCI	GTSAC	1 cut(s)	904
PagI	TCATGA	2 cut(s)	103, 543
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	450
PctI	GAATGC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	2 cut(s)	110, 240
PkrI	GCNGC	7 cut(s)	51, 140, 216, 227, 791, 983, 1036
PleI	GAGTC	6 cut(s)	293, 315, 384, 491, 491, 686
PpsI	GAGTC	6 cut(s)	293, 315, 384, 491, 491, 686
Psp6I	CCWGG	2 cut(s)	729, 814
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	2 cut(s)	729, 814
PspN4I	GGNNCC	2 cut(s)	705, 938
PspPI	GGNCC	2 cut(s)	703, 818
PstI	CTGCAG	1 cut(s)	983
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	598
RsaI	GTAC	2 cut(s)	18, 837
RsaNI	GTAC	2 cut(s)	17, 836
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	233, 423, 1051
SatI	GCNGC	7 cut(s)	50, 139, 215, 226, 790, 982, 1035
Sau3AI	GATC	5 cut(s)	253, 546, 598, 745, 772
Sau96I	GGNCC	2 cut(s)	703, 818
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	6 cut(s)	293, 316, 384, 491, 492, 686
ScrFI	CCNGG	2 cut(s)	731, 816
SduI	GDGCHC	2 cut(s)	939, 966
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	979
SinI	GGWCC	2 cut(s)	703, 818
Sse9I	AATT	5 cut(s)	94, 249, 624, 754, 893
SsiI	CCGC	2 cut(s)	396, 439
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	729, 814
StyI	CCWWGG	2 cut(s)	717, 955
TaaI	ACNGT	2 cut(s)	167, 525
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	606
TasI	AATT	5 cut(s)	94, 249, 624, 754, 893
TatI	WGTACW	2 cut(s)	16, 835
TfiI	GAWTC	2 cut(s)	110, 240
Tru1I	TTAA	3 cut(s)	233, 423, 1051
Tru9I	TTAA	3 cut(s)	233, 423, 1051
TseFI	GTSAC	1 cut(s)	904
TseI	GCWGC	7 cut(s)	49, 138, 214, 225, 789, 981, 1034
Tsp45I	GTSAC	1 cut(s)	904
TspDTI	ATGAA	7 cut(s)	92, 102, 136, 141, 332, 563, 747
VpaK11BI	GGWCC	2 cut(s)	703, 818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	135
ZraI	GACGTC	1 cut(s)	541
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.