MD09G1233600.v1.1

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
29345279 .. 29349415
4137 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1233600.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGATATATGTATACATATACTTTGTGAGTTGGACCAGCCTTCTAATATCCCTCTGTGTTTTCATGGCTTCTTTTGCAATTGGAGCTGCAGTAGTTCTGCTTCTACTTCCTCTTCTGCATCACCAAGTGCATGGAGGACTCGTAGGGAGCGATATCAACGACTGTGATGTTTCTAACGGAAACTGGGTTTTTGATGATTCATATCCTCTTTATGCCGCTCCCAGCTGCCCCTTCATTGAGAAGGAATTTGATTGCGTAGGGAATGGCCGCCCGGACAAAAACTACCTCAAGTATAGATGGCAACCCTTTGCCTGCAGCTTACCAAGATTCAATGGAAGTAGTTTCTTGTCGACATACACAGGGAAAAGCATCATGTTTGTCGGGGACTCGTTGAGTTTGAACCAATGGCAGTCACTTACTTGCATGCTTTACACAGCTGTTCCAGGAACCAAATACACATTGGTCAGGAAAGAAGGACTCTCTACATTCATATTCCTGGAATACAATCTGAGTGTGTCCTTCTCCCGAAATGCCTTCATTGTCGACATTGTAGGCACACCTGATGGCCGTGTCCTCAAACTCGACTCAATCTCACCCGAAAACGAGCAACTGTGGCTGCAAAACGATGTATTGATCTTCGACTCATGGCACTGGTGGCTTCACGTCGGAAGAAAGCAACCATGGGATTTAATTCAAGCGGGGAATCAAACTTACAAGGACATGGATCGGTTGCGTGCATATGAGAAGGCGTTGACCACTTGGGCTGGATGGGTTGACTCCAAAGTGAACTCCAACAAAACCAAGGTCTTCTTCCAAGGTGTTTCTCCAGATCATAGCAATGCAACAGAGTGGGGTGATCCTCAAGCAATTAACTGCAATGCACAAACAGAACCACTGCCAGGCCCAGACTTTCCAGGAAAACCACATCCAGCAGAGCAAGTACTAGAGAAAGTGTTACGCACCGCGTCAAGGCCGGTCCATTTGCTGAATATTACAACTCTTTCGCAACTACGAAAGGATGCGCACCCGTCGGTCTATGGCCTCGGCGGGCACCGGGGCATGGACTGCAGCCATTGGTGTTTAGCTGGAGTTCCTGATACTTGGAATGTGCTTCTTCATGCAGCTCTTACTCAAAATTAG

Protein Analysis

380

Amino Acids

42.62

Weight (kDa)

6.16

Isoelectric Point (pI)

31.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 54 - 106 1.6e-22 PMR5 N terminal Domain
PC-Esterase PF13839 107 - 374 5.8e-88 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1023
AccB1I GGYRCC 1 cut(s) 1050
AccBSI CCGCTC 1 cut(s) 218
AccI GTMKAC 3 cut(s) 12, 350, 543
AccII CGCG 1 cut(s) 965
AciI CCGC 5 cut(s) 216, 268, 698, 963, 1047
AclWI GGATC 2 cut(s) 732, 851
AcoI YGGCCR 2 cut(s) 265, 565
AcsI RAATTY 1 cut(s) 245
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 1 cut(s) 942
AfiI CCNNNNNNNGG 3 cut(s) 899, 969, 1060
AgsI TTSAA 3 cut(s) 331, 400, 695
AjiI CACGTC 1 cut(s) 664
AjnI CCWGG 4 cut(s) 442, 495, 898, 913
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AluBI AGCT 6 cut(s) 86, 225, 318, 437, 1085, 1124
AluI AGCT 6 cut(s) 86, 225, 318, 437, 1085, 1124
AlwI GGATC 2 cut(s) 732, 851
AoxI GGCC 5 cut(s) 265, 565, 901, 971, 1039
ApeKI GCWGC 6 cut(s) 86, 225, 315, 616, 1068, 1121
ApoI RAATTY 1 cut(s) 245
ArsI GACNNNNNNTTYG 2 cut(s) 789, 821
AspLEI GCGC 1 cut(s) 1024
AspS9I GGNCC 3 cut(s) 33, 902, 976
AsuC2I CCSGG 2 cut(s) 272, 1055
AsuHPI GGTGA 3 cut(s) 113, 585, 866
AvaII GGWCC 2 cut(s) 33, 976
BaeGI GKGCMC 1 cut(s) 1053
BanI GGYRCC 1 cut(s) 1050
BarI GAAGNNNNNNTAC 2 cut(s) 84, 116
BbsI GAAGAC 1 cut(s) 799
BbvI GCAGC 6 cut(s) 73, 212, 327, 603, 1080, 1133
BccI CCATC 3 cut(s) 291, 557, 762
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 4 cut(s) 444, 497, 900, 915
BcnI CCSGG 2 cut(s) 272, 1055
BfaI CTAG 1 cut(s) 944
BfmI CTRYAG 3 cut(s) 87, 313, 1066
BisI GCNGC 8 cut(s) 87, 216, 226, 268, 316, 617, 1069, 1122
BlsI GCNGC 8 cut(s) 88, 217, 227, 269, 317, 618, 1070, 1123
BmcAI AGTACT 1 cut(s) 942
Bme1390I CCNGG 6 cut(s) 272, 444, 497, 900, 915, 1055
Bme18I GGWCC 2 cut(s) 33, 976
BmgBI CACGTC 1 cut(s) 664
BmgT120I GGNCC 3 cut(s) 33, 902, 976
BmiI GGNNCC 2 cut(s) 448, 1052
BmrFI CCNGG 6 cut(s) 272, 444, 497, 900, 915, 1055
BmrI ACTGGG 1 cut(s) 193
BmsI GCATC 3 cut(s) 127, 378, 1009
BmuI ACTGGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 799
BpmI CTGGAG 2 cut(s) 810, 1107
BpuEI CTTGAG 2 cut(s) 272, 846
BpuMI CCSGG 2 cut(s) 272, 1055
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 5 cut(s) 680, 801, 814, 1042, 1054
BsaXI ACNNNNNCTCC 4 cut(s) 75, 105, 126, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 899, 969, 1060
Bse118I RCCGGY 1 cut(s) 973
Bse1I ACTGG 2 cut(s) 188, 656
Bse3DI GCAATG 2 cut(s) 844, 883
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 4 cut(s) 444, 497, 900, 915
BseDI CCNNGG 5 cut(s) 680, 801, 814, 1042, 1054
BseGI GGATG 3 cut(s) 773, 925, 1024
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 899, 969, 1060
BseMI GCAATG 2 cut(s) 844, 883
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 188, 656
BseSI GKGCMC 1 cut(s) 1053
BseXI GCAGC 6 cut(s) 73, 212, 327, 603, 1080, 1133
BseYI CCCAGC 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 965
BshFI GGCC 5 cut(s) 267, 567, 903, 973, 1041
BshNI GGYRCC 1 cut(s) 1050
BsiSI CCGG 3 cut(s) 272, 974, 1054
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 3 cut(s) 899, 969, 1060
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 5 cut(s) 267, 567, 903, 973, 1041
Bsp1286I GDGCHC 1 cut(s) 1053
Bsp143I GATC 4 cut(s) 633, 724, 829, 856
Bsp19I CCATGG 1 cut(s) 680
BspACI CCGC 5 cut(s) 216, 268, 698, 963, 1047
BspANI GGCC 5 cut(s) 267, 567, 903, 973, 1041
BspCNI CTCAG 1 cut(s) 501
BspFNI CGCG 1 cut(s) 965
BspLI GGNNCC 2 cut(s) 448, 1052
BspMAI CTGCAG 3 cut(s) 91, 317, 1070
BspPI GGATC 2 cut(s) 732, 851
BspT107I GGYRCC 1 cut(s) 1050
BsrBI CCGCTC 1 cut(s) 218
BsrDI GCAATG 2 cut(s) 844, 883
BsrFI RCCGGY 1 cut(s) 973
BsrI ACTGG 2 cut(s) 188, 656
BssAI RCCGGY 1 cut(s) 973
BssECI CCNNGG 5 cut(s) 680, 801, 814, 1042, 1054
BssMI GATC 4 cut(s) 633, 724, 829, 856
BssNAI GTATAC 1 cut(s) 13
BssT1I CCWWGG 3 cut(s) 680, 801, 814
Bst1107I GTATAC 1 cut(s) 13
Bst2UI CCWGG 4 cut(s) 444, 497, 900, 915
Bst4CI ACNGT 2 cut(s) 164, 612
Bst6I CTCTTC 1 cut(s) 117
BstAPI GCANNNNNTGC 1 cut(s) 1065
BstC8I GCNNGC 4 cut(s) 313, 425, 735, 1049
BstDEI CTNAG 1 cut(s) 509
BstDSI CCRYGG 1 cut(s) 680
BstF5I GGATG 3 cut(s) 773, 925, 1024
BstFNI CGCG 1 cut(s) 965
BstHHI GCGC 1 cut(s) 1024
BstKTI GATC 4 cut(s) 636, 727, 832, 859
BstMBI GATC 4 cut(s) 633, 724, 829, 856
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 613, 655, 1065
BstNI CCWGG 4 cut(s) 444, 497, 900, 915
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 6 cut(s) 270, 442, 495, 898, 913, 1053
BstSFI CTRYAG 3 cut(s) 87, 313, 1066
BstSLI GKGCMC 1 cut(s) 1053
BstUI CGCG 1 cut(s) 965
BstV1I GCAGC 6 cut(s) 73, 212, 327, 603, 1080, 1133
BstV2I GAAGAC 1 cut(s) 799
BstXI CCANNNNNNTGG 1 cut(s) 131
BstZ17I GTATAC 1 cut(s) 13
BsuRI GGCC 5 cut(s) 267, 567, 903, 973, 1041
BtgI CCRYGG 1 cut(s) 680
BtrI CACGTC 1 cut(s) 664
BtsCI GGATG 3 cut(s) 773, 925, 1024
BtsI GCAGTG 1 cut(s) 893
BtsIMutI CAGTG 2 cut(s) 649, 893
Cac8I GCNNGC 4 cut(s) 313, 425, 735, 1049
CfoI GCGC 1 cut(s) 1024
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 3 cut(s) 33, 902, 976
CseI GACGC 1 cut(s) 954
Csp6I GTAC 1 cut(s) 941
CviAII CATG 9 cut(s) 64, 131, 373, 424, 645, 681, 721, 1060, 1118
CviQI GTAC 1 cut(s) 941
DdeI CTNAG 1 cut(s) 509
DpnI GATC 4 cut(s) 635, 726, 831, 858
DpnII GATC 4 cut(s) 633, 724, 829, 856
DraIII CACNNNGTG 1 cut(s) 127
EaeI YGGCCR 2 cut(s) 265, 565
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 3 cut(s) 680, 801, 814
Eco32I GATATC 1 cut(s) 154
Eco47I GGWCC 2 cut(s) 33, 976
EcoRII CCWGG 4 cut(s) 442, 495, 898, 913
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 3 cut(s) 680, 801, 814
ErhI CCWWGG 3 cut(s) 680, 801, 814
FaeI CATG 9 cut(s) 67, 134, 376, 427, 648, 684, 724, 1063, 1121
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 1 cut(s) 398
FatI CATG 9 cut(s) 63, 130, 372, 423, 644, 680, 720, 1059, 1117
FauI CCCGC 2 cut(s) 691, 1040
FauNDI CATATG 1 cut(s) 739
FblI GTMKAC 3 cut(s) 12, 350, 543
Fnu4HI GCNGC 8 cut(s) 87, 216, 226, 268, 316, 617, 1069, 1122
FokI GGATG 3 cut(s) 780, 912, 1031
Fsp4HI GCNGC 8 cut(s) 87, 216, 226, 268, 316, 617, 1069, 1122
FspAI RTGCGCAY 1 cut(s) 1023
FspBI CTAG 1 cut(s) 944
FspI TGCGCA 1 cut(s) 1023
GlaI GCGC 1 cut(s) 1023
GluI GCNGC 8 cut(s) 87, 216, 226, 268, 316, 617, 1069, 1122
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 2 cut(s) 810, 1107
HaeIII GGCC 5 cut(s) 267, 567, 903, 973, 1041
HapII CCGG 3 cut(s) 272, 974, 1054
HgaI GACGC 1 cut(s) 954
HhaI GCGC 1 cut(s) 1024
Hin1II CATG 9 cut(s) 67, 134, 376, 427, 648, 684, 724, 1063, 1121
Hin6I GCGC 1 cut(s) 1022
HinP1I GCGC 1 cut(s) 1022
HincII GTYRAC 4 cut(s) 351, 544, 753, 775
HindII GTYRAC 4 cut(s) 351, 544, 753, 775
HinfI GANTC 9 cut(s) 138, 197, 327, 386, 477, 584, 641, 703, 776
HpaII CCGG 3 cut(s) 272, 974, 1054
HphI GGTGA 3 cut(s) 113, 585, 866
Hpy166II GTNNAC 6 cut(s) 13, 351, 544, 753, 775, 787
Hpy188I TCNGA 2 cut(s) 510, 668
Hpy188III TCNNGA 4 cut(s) 466, 525, 827, 1094
Hpy8I GTNNAC 6 cut(s) 13, 351, 544, 753, 775, 787
Hpy99I CGWCG 2 cut(s) 668, 1033
HpyAV CCTTC 7 cut(s) 50, 235, 241, 467, 529, 544, 739
HpyCH4III ACNGT 2 cut(s) 164, 612
HpyCH4IV ACGT 1 cut(s) 663
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 613, 655, 1065
HpyF3I CTNAG 1 cut(s) 509
HpySE526I ACGT 1 cut(s) 663
Hsp92II CATG 9 cut(s) 67, 134, 376, 427, 648, 684, 724, 1063, 1121
HspAI GCGC 1 cut(s) 1022
Kzo9I GATC 4 cut(s) 633, 724, 829, 856
LmnI GCTCC 3 cut(s) 83, 147, 223
Lsp1109I GCAGC 6 cut(s) 73, 212, 327, 603, 1080, 1133
LweI GCATC 3 cut(s) 127, 378, 1009
MaeI CTAG 1 cut(s) 944
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 2 cut(s) 411, 954
MalI GATC 4 cut(s) 635, 726, 831, 858
MbiI CCGCTC 1 cut(s) 218
MboI GATC 4 cut(s) 633, 724, 829, 856
MboII GAAGA 6 cut(s) 104, 628, 681, 799, 802, 1106
MfeI CAATTG 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 1053
MluCI AATT 5 cut(s) 78, 245, 690, 867, 1135
MlyI GAGTC 6 cut(s) 132, 380, 471, 578, 635, 770
MmeI TCCRAC 3 cut(s) 11, 646, 816
MnlI CCTC 8 cut(s) 62, 120, 128, 216, 296, 584, 870, 1052
MseI TTAA 2 cut(s) 689, 870
MslI CAYNNNNRTG 1 cut(s) 837
MspA1I CMGCKG 2 cut(s) 225, 437
MspI CCGG 3 cut(s) 272, 974, 1054
MspR9I CCNGG 6 cut(s) 272, 444, 497, 900, 915, 1055
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 4 cut(s) 444, 497, 900, 915
MvnI CGCG 1 cut(s) 965
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 613, 655, 1065
NciI CCSGG 2 cut(s) 272, 1055
NcoI CCATGG 1 cut(s) 680
NdeI CATATG 1 cut(s) 739
NdeII GATC 4 cut(s) 633, 724, 829, 856
NlaIII CATG 9 cut(s) 67, 134, 376, 427, 648, 684, 724, 1063, 1121
NlaIV GGNNCC 2 cut(s) 448, 1052
NmeAIII GCCGAG 1 cut(s) 1023
NmuCI GTSAC 1 cut(s) 411
NsbI TGCGCA 1 cut(s) 1023
NspI RCATGY 1 cut(s) 427
PaeI GCATGC 1 cut(s) 427
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 3 cut(s) 197, 327, 703
PfoI TCCNGGA 3 cut(s) 442, 495, 913
PkrI GCNGC 8 cut(s) 88, 217, 227, 269, 317, 618, 1070, 1123
PleI GAGTC 6 cut(s) 132, 380, 471, 578, 635, 770
PpsI GAGTC 6 cut(s) 132, 380, 471, 578, 635, 770
Psp6I CCWGG 4 cut(s) 442, 495, 898, 913
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 4 cut(s) 442, 495, 898, 913
PspN4I GGNNCC 2 cut(s) 448, 1052
PspPI GGNCC 3 cut(s) 33, 902, 976
PstI CTGCAG 3 cut(s) 91, 317, 1070
PvuII CAGCTG 2 cut(s) 225, 437
RsaI GTAC 1 cut(s) 942
RsaNI GTAC 1 cut(s) 941
RseI CAYNNNNRTG 1 cut(s) 837
SalI GTCGAC 2 cut(s) 349, 542
SaqAI TTAA 2 cut(s) 689, 870
SatI GCNGC 8 cut(s) 87, 216, 226, 268, 316, 617, 1069, 1122
Sau3AI GATC 4 cut(s) 633, 724, 829, 856
Sau96I GGNCC 3 cut(s) 33, 902, 976
ScaI AGTACT 1 cut(s) 942
SchI GAGTC 6 cut(s) 132, 380, 471, 578, 635, 770
ScrFI CCNGG 6 cut(s) 272, 444, 497, 900, 915, 1055
SduI GDGCHC 1 cut(s) 1053
SfaNI GCATC 3 cut(s) 127, 378, 1009
SfcI CTRYAG 3 cut(s) 87, 313, 1066
SinI GGWCC 2 cut(s) 33, 976
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 2 cut(s) 287, 861
SmoI CTYRAG 2 cut(s) 287, 861
SphI GCATGC 1 cut(s) 427
Sse9I AATT 5 cut(s) 78, 245, 690, 867, 1135
SsiI CCGC 5 cut(s) 216, 268, 698, 963, 1047
SspI AATATT 1 cut(s) 991
SspMI CTAG 1 cut(s) 944
StyD4I CCNGG 6 cut(s) 270, 442, 495, 898, 913, 1053
StyI CCWWGG 3 cut(s) 680, 801, 814
TaaI ACNGT 2 cut(s) 164, 612
TaiI ACGT 1 cut(s) 666
TaqI TCGA 4 cut(s) 350, 543, 582, 639
TaqII GACCGA 1 cut(s) 1021
TasI AATT 5 cut(s) 78, 245, 690, 867, 1135
TatI WGTACW 1 cut(s) 940
TauI GCSGC 2 cut(s) 218, 270
TfiI GAWTC 3 cut(s) 197, 327, 703
Tru1I TTAA 2 cut(s) 689, 870
Tru9I TTAA 2 cut(s) 689, 870
TscAI CASTG 2 cut(s) 656, 900
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 6 cut(s) 86, 225, 315, 616, 1068, 1121
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 6 cut(s) 52, 189, 223, 478, 526, 1106
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 2 cut(s) 656, 900
VpaK11BI GGWCC 2 cut(s) 33, 976
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmiI GTMKAC 3 cut(s) 12, 350, 543
XspI CTAG 1 cut(s) 944
ZrmI AGTACT 1 cut(s) 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.