Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

27790630 .. 27799200

Gene Structure 8571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1229900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGATAATTTTGCCATCGGCACGTTTCTATTGGTGCTCTCTCTTCTGCACCATCATGTACACGGAAGTGGACAGTACTCTAGTGAAGGATGTGATCTTTTCCAAGGAAGATGGGTTTATGATGAATCATATCCTTTCTATACTTCATCACAATGCTCCTTCATAGAGAAGCAATTCGATTGCCTACAAAATGGTCGTTCCGACAAATTCTATCTCAAATTCCGATGGCAGCCCACTCGCTGCAACTTAACAAGGTTCAACGGTGAAGATTTCTTGCAAATATTTAGAGGAAAAAGCATCATGTTCGTTGGGGACTCGCTGAGTTTGAACCAATGGCAATCACTCACCTGTATGCTTCATACAGCCAATCCACAGACTCAATATAAACTCTACCGGACGGGAGGACTATCCACATTCGCCTTCCCAGCATACAATATGAAGGTCATGTTCTCTCGGAATGCATTTCTTGTTGATACAATAAACACAACTGCTGGTCGAGTTCTTAAACTCGACTCTATCGAAAGTGGGAAACTGTGGATGAATAGTGATGTTCTGATCTTCAACTCATGGCATTGGTGGCTTCACACCGGAAGGAAGCAACCTTGGGATCTAATTCAAGAAGGGAGCCGTACATACAAAGACATGGATCGCTTAGTTGCTTACGAGAAGGCGCTCATGACATGGGCTAGATGGGTTGCTACCAATTCGGAATCAACAAAAACAAGAGTTTTTTTCCAAGGCGTTTCCCCAGATCATAATAATGGAAGTGAATGGGGAGAGGCAACCTCAAACCAGTGTGAAGGGCAAACACAACCAATGGCGGGGAATGAGTATCTGGCAGGTTCACATCCAGCAGAGGTAGTAGTAGAAAGAGTGCTGCGTTCTATATCAAACCCGGTTCATTTGCTAAATGTCACAACCCTTTCACAACTAAGAAAAGACGGGCATCCATCTGTGTACGGTCACGGTGGTCACAGGGACATGGACTGCAGTCACTGGTGTTTAGCTGGAGTGCCTGATACTTGGAATCAACTTCTATACGCATCTCTGATACAAAGCAAGACCAGTTACGATGTGGACTCGGAAAATTATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

366

Amino Acids

41.89

Weight (kDa)

6.7

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	30 - 82	1.7e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	83 - 348	9.4e-94	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1092
Acc36I	ACCTGC	1 cut(s)	830
AciI	CCGC	1 cut(s)	821
AclWI	GGATC	2 cut(s)	615, 654
AcsI	RAATTY	2 cut(s)	206, 218
AfaI	GTAC	4 cut(s)	60, 77, 631, 959
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	259, 328, 562, 617
AleI	CACNNNNGTG	1 cut(s)	66
AluBI	AGCT	1 cut(s)	1007
AluI	AGCT	1 cut(s)	1007
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	615, 654
AlwNI	CAGNNNCTG	1 cut(s)	996
ApeKI	GCWGC	3 cut(s)	229, 240, 877
ApoI	RAATTY	2 cut(s)	206, 218
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	673
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	275, 337
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	3 cut(s)	227, 241, 864
BccI	CCATC	6 cut(s)	23, 60, 105, 219, 684, 958
BceAI	ACGGC	1 cut(s)	612
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 286, 320
BcnI	CCSGG	1 cut(s)	896
BfaI	CTAG	2 cut(s)	81, 687
BfmI	CTRYAG	1 cut(s)	988
BfoI	RGCGCY	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	830
BisI	GCNGC	3 cut(s)	230, 241, 878
BlsI	GCNGC	3 cut(s)	231, 242, 879
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	896
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	1 cut(s)	896
BmsI	GCATC	3 cut(s)	306, 955, 1052
BoxI	GACNNNNGTC	1 cut(s)	990
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BpmI	CTGGAG	1 cut(s)	1029
BpuMI	CCSGG	1 cut(s)	896
BsaJI	CCNNGG	3 cut(s)	103, 602, 736
BsaWI	WCCGGW	2 cut(s)	393, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	3 cut(s)	793, 1001, 1065
BseDI	CCNNGG	3 cut(s)	103, 602, 736
BseGI	GGATG	4 cut(s)	95, 543, 847, 946
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	3 cut(s)	793, 1001, 1065
BseXI	GCAGC	3 cut(s)	227, 241, 864
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	394, 588, 896
BslFI	GGGAC	2 cut(s)	326, 992
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmFI	GGGAC	2 cut(s)	326, 992
BsmI	GAATGC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	94, 555, 607, 646, 751
BspACI	CCGC	1 cut(s)	821
BspCNI	CTCAG	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	1 cut(s)	626
BspMAI	CTGCAG	1 cut(s)	992
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	2 cut(s)	615, 654
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	793, 1001, 1065
BssECI	CCNNGG	3 cut(s)	103, 602, 736
BssMI	GATC	5 cut(s)	94, 555, 607, 646, 751
BssT1I	CCWWGG	3 cut(s)	103, 602, 736
Bst4CI	ACNGT	5 cut(s)	75, 263, 534, 962, 968
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	320, 652, 932
BstF5I	GGATG	4 cut(s)	95, 543, 847, 946
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	5 cut(s)	97, 558, 610, 649, 754
BstMBI	GATC	5 cut(s)	94, 555, 607, 646, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 577
BstPAI	GACNNNNGTC	1 cut(s)	990
BstSCI	CCNGG	1 cut(s)	894
BstSFI	CTRYAG	1 cut(s)	988
BstV1I	GCAGC	3 cut(s)	227, 241, 864
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BtsCI	GGATG	4 cut(s)	95, 543, 847, 946
BtsIMutI	CAGTG	2 cut(s)	800, 994
BveI	ACCTGC	1 cut(s)	830
CaiI	CAGNNNCTG	1 cut(s)	996
CciI	TCATGA	1 cut(s)	675
CfoI	GCGC	1 cut(s)	673
Csp6I	GTAC	4 cut(s)	59, 76, 630, 958
CviAII	CATG	8 cut(s)	56, 301, 445, 567, 643, 676, 681, 982
CviJI	RGCY	6 cut(s)	232, 365, 580, 627, 686, 1007
CviKI_1	RGCY	6 cut(s)	232, 365, 580, 627, 686, 1007
CviQI	GTAC	4 cut(s)	59, 76, 630, 958
DdeI	CTNAG	3 cut(s)	320, 652, 932
DpnI	GATC	5 cut(s)	96, 557, 609, 648, 753
DpnII	GATC	5 cut(s)	94, 555, 607, 646, 751
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	103, 602, 736
EcoT14I	CCWWGG	3 cut(s)	103, 602, 736
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	3 cut(s)	103, 602, 736
FaeI	CATG	8 cut(s)	59, 304, 448, 570, 646, 679, 684, 985
FaqI	GGGAC	2 cut(s)	326, 992
FatI	CATG	8 cut(s)	55, 300, 444, 566, 642, 675, 680, 981
FauI	CCCGC	1 cut(s)	814
Fnu4HI	GCNGC	3 cut(s)	230, 241, 878
FokI	GGATG	4 cut(s)	102, 550, 834, 933
Fsp4HI	GCNGC	3 cut(s)	230, 241, 878
FspBI	CTAG	2 cut(s)	81, 687
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	3 cut(s)	230, 241, 878
GsaI	CCCAGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	1029
HaeII	RGCGCY	1 cut(s)	674
HapII	CCGG	3 cut(s)	394, 588, 896
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	8 cut(s)	59, 304, 448, 570, 646, 679, 684, 985
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HinfI	GANTC	7 cut(s)	125, 314, 376, 512, 710, 1027, 1079
HpaII	CCGG	3 cut(s)	394, 588, 896
HphI	GGTGA	2 cut(s)	275, 337
Hpy166II	GTNNAC	5 cut(s)	61, 71, 845, 958, 1078
Hpy188I	TCNGA	7 cut(s)	202, 224, 456, 555, 709, 1050, 1084
Hpy188III	TCNNGA	2 cut(s)	617, 676
Hpy8I	GTNNAC	5 cut(s)	61, 71, 845, 958, 1078
HpyAV	CCTTC	8 cut(s)	80, 169, 430, 433, 585, 614, 661, 794
HpyCH4III	ACNGT	5 cut(s)	75, 263, 534, 962, 968
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	5 cut(s)	49, 243, 277, 461, 990
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 577
HpyF3I	CTNAG	3 cut(s)	320, 652, 932
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	8 cut(s)	59, 304, 448, 570, 646, 679, 684, 985
HspAI	GCGC	1 cut(s)	671
Kzo9I	GATC	5 cut(s)	94, 555, 607, 646, 751
LmnI	GCTCC	2 cut(s)	161, 624
Lsp1109I	GCAGC	3 cut(s)	227, 241, 864
LweI	GCATC	3 cut(s)	306, 955, 1052
MaeI	CTAG	2 cut(s)	81, 687
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	5 cut(s)	913, 962, 971, 992, 1067
MalI	GATC	5 cut(s)	96, 557, 609, 648, 753
MboI	GATC	5 cut(s)	94, 555, 607, 646, 751
MboII	GAAGA	4 cut(s)	35, 120, 278, 550
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	7 cut(s)	7, 173, 206, 218, 612, 703, 1087
MlyI	GAGTC	4 cut(s)	308, 370, 506, 1073
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	281, 395, 772, 796, 850
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	2 cut(s)	248, 504
MslI	CAYNNNNRTG	5 cut(s)	54, 66, 151, 350, 759
MspI	CCGG	3 cut(s)	394, 588, 896
MspR9I	CCNGG	1 cut(s)	896
Mva1269I	GAATGC	1 cut(s)	463
MwoI	GCNNNNNNNGC	2 cut(s)	425, 577
NciI	CCSGG	1 cut(s)	896
NdeII	GATC	5 cut(s)	94, 555, 607, 646, 751
NlaIII	CATG	8 cut(s)	59, 304, 448, 570, 646, 679, 684, 985
NlaIV	GGNNCC	1 cut(s)	626
NmuCI	GTSAC	4 cut(s)	913, 962, 971, 992
NsiI	ATGCAT	1 cut(s)	463
OliI	CACNNNNGTG	1 cut(s)	66
PagI	TCATGA	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	3 cut(s)	125, 710, 1027
PkrI	GCNGC	3 cut(s)	231, 242, 879
PleI	GAGTC	4 cut(s)	308, 370, 506, 1073
PpsI	GAGTC	4 cut(s)	308, 370, 506, 1073
PshAI	GACNNNNGTC	1 cut(s)	990
PsiI	TTATAA	1 cut(s)	1092
PspFI	CCCAGC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	992
PstNI	CAGNNNCTG	1 cut(s)	996
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	4 cut(s)	60, 77, 631, 959
RsaNI	GTAC	4 cut(s)	59, 76, 630, 958
RseI	CAYNNNNRTG	5 cut(s)	54, 66, 151, 350, 759
SaqAI	TTAA	2 cut(s)	248, 504
SatI	GCNGC	3 cut(s)	230, 241, 878
Sau3AI	GATC	5 cut(s)	94, 555, 607, 646, 751
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	4 cut(s)	308, 370, 506, 1073
ScrFI	CCNGG	1 cut(s)	896
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	9 cut(s)	26, 257, 350, 444, 604, 788, 844, 861, 1009
SfaNI	GCATC	3 cut(s)	306, 955, 1052
SfcI	CTRYAG	1 cut(s)	988
SmiMI	CAYNNNNRTG	5 cut(s)	54, 66, 151, 350, 759
Sse9I	AATT	7 cut(s)	7, 173, 206, 218, 612, 703, 1087
SsiI	CCGC	1 cut(s)	821
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	81, 687
StyD4I	CCNGG	1 cut(s)	894
StyI	CCWWGG	3 cut(s)	103, 602, 736
TaaI	ACNGT	5 cut(s)	75, 263, 534, 962, 968
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	4 cut(s)	177, 496, 510, 519
TasI	AATT	7 cut(s)	7, 173, 206, 218, 612, 703, 1087
TatI	WGTACW	2 cut(s)	58, 75
TfiI	GAWTC	3 cut(s)	125, 710, 1027
Tru1I	TTAA	2 cut(s)	248, 504
Tru9I	TTAA	2 cut(s)	248, 504
TscAI	CASTG	2 cut(s)	800, 1001
TseFI	GTSAC	4 cut(s)	913, 962, 971, 992
TseI	GCWGC	3 cut(s)	229, 240, 877
Tsp45I	GTSAC	4 cut(s)	913, 962, 971, 992
TspDTI	ATGAA	7 cut(s)	135, 138, 151, 347, 452, 554, 890
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	800, 1001
XapI	RAATTY	2 cut(s)	206, 218
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	81, 687
ZrmI	AGTACT	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.