Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

8667333 .. 8670442

Gene Structure 3110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G108000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGATATTTTTGGCATTAGCACACTTGTTATTGTGCTCTCTCTTCTGCACCATGTACATGGAGATGTAACTTCCACTAAAGGATGTGATATTTTCCAAGGAAAGTGGGTTTATGATGCATCATATCCTCTGTATAATTCAGCAAAATGCTCCTTCATAGAGAAGGAATTCGATTGCCTAAAGAATGGTCGTCCAGACAAATATTATCTTAAATATCGATGGCAGCCCACTGGTTGCAGCTTAACAAGGTTCAACGGTCAAGATTTCTTGCAAAGATTTAGAGGAAAGAGCATCATGTTTGTTGGGGACTCACTGAGCTTGAATCAATGGCAGTCACTCACTTGTATGCTTCATACAGCCAACCCACAAACCCCATATAAACTGTTCAGGATAGGAGGGCTATCCACATTCACATTCCCTGCATACAATGTGAAGGTCATGTTCTCTAGGAATGCGTTTCTGGTTGATATTATAGCAACAAAAGCTGGGCGAGTTCTTAAACTTGACTCTATTGAAAGTGGGAAAATGTGGAAGGGAATTGACTTCTTGATCTTCAACACATGGCATTGGTGGCTTCACAGTGGAAGGAAGCAACCTTGGGATCTAATTCAAGAAGGAAACCGCCTGTATAAAGACATGGATCGGTTGGTTGCGTATAAGAAGGGGCTCAACACTTGGGCTAGATGGATTGACACCAATTTGGACCCCAAAAAAACAAGAGTCTTCTTCCAAGGTGTTTCCCCAGATCATAATAATGGAGGTGATTGGGGGGAGCCAACTGCAAAACATTGTGAGGGACAAATGCGACCAGTGGTTGGGCATCAGTATCCAGCAGGTTCACATCCAGCAGAGCTTGTAGTAGAAAGAGTGCTGCATTCTATGTCAAAGCCAGCTTATTTGCTTAACGTCACAACCCTTTCACAACTAAGAAAGGATGGCCATCCGTCTGTGTATGGTCACGGCGGTCACAGGGACATGGACTGCAGCCACTGGTGTCTGGCCGGAGTTCCTGATACTTGGAATCAACTTCTATATGCAGCTCTCATACAAAGAAAAACCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

355

Amino Acids

40.6

Weight (kDa)

9.26

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	815
AciI	CCGC	2 cut(s)	622, 963
AclWI	GGATC	2 cut(s)	609, 648
AcoI	YGGCCR	2 cut(s)	937, 999
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgsI	TTSAA	5 cut(s)	253, 322, 515, 556, 611
AluBI	AGCT	6 cut(s)	240, 318, 485, 853, 893, 1040
AluI	AGCT	6 cut(s)	240, 318, 485, 853, 893, 1040
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	2 cut(s)	609, 648
AlwNI	CAGNNNCTG	1 cut(s)	990
AoxI	GGCC	2 cut(s)	937, 999
ApeKI	GCWGC	5 cut(s)	223, 237, 871, 984, 1037
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	703
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	703
BalI	TGGCCA	1 cut(s)	939
BanII	GRGCYC	1 cut(s)	669
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	5 cut(s)	235, 249, 858, 996, 1049
BccI	CCATC	4 cut(s)	213, 678, 929, 948
BceAI	ACGGC	1 cut(s)	976
BciVI	GTATCC	1 cut(s)	837
BfaI	CTAG	2 cut(s)	447, 681
BfmI	CTRYAG	1 cut(s)	982
BfuAI	ACCTGC	1 cut(s)	824
BfuI	GTATCC	1 cut(s)	837
BisI	GCNGC	5 cut(s)	224, 238, 872, 985, 1038
BlsI	GCNGC	5 cut(s)	225, 239, 873, 986, 1039
Bme18I	GGWCC	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	703
BmiI	GGNNCC	2 cut(s)	705, 774
BmsI	GCATC	4 cut(s)	106, 128, 300, 829
BpiI	GAAGAC	1 cut(s)	715
Bsa29I	ATCGAT	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	939
BsaJI	CCNNGG	3 cut(s)	97, 596, 730
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse1I	ACTGG	3 cut(s)	235, 809, 995
Bse8I	GATNNNNATC	1 cut(s)	939
BseCI	ATCGAT	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	97, 596, 730
BseGI	GGATG	4 cut(s)	89, 841, 940, 940
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	3 cut(s)	235, 809, 995
BseXI	GCAGC	5 cut(s)	235, 249, 858, 996, 1049
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	939, 1001
BshVI	ATCGAT	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	1002
BslFI	GGGAC	3 cut(s)	320, 810, 986
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmFI	GGGAC	3 cut(s)	320, 810, 986
BsmI	GAATGC	2 cut(s)	457, 874
BsnI	GGCC	2 cut(s)	939, 1001
Bsp1286I	GDGCHC	2 cut(s)	39, 669
Bsp1407I	TGTACA	1 cut(s)	55
Bsp143I	GATC	4 cut(s)	549, 601, 640, 745
BspACI	CCGC	2 cut(s)	622, 963
BspANI	GGCC	2 cut(s)	939, 1001
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	705, 774
BspMAI	CTGCAG	1 cut(s)	986
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	609, 648
BsrGI	TGTACA	1 cut(s)	55
BsrI	ACTGG	3 cut(s)	235, 809, 995
BssECI	CCNNGG	3 cut(s)	97, 596, 730
BssMI	GATC	4 cut(s)	549, 601, 640, 745
BssT1I	CCWWGG	3 cut(s)	97, 596, 730
Bst4CI	ACNGT	3 cut(s)	257, 384, 581
Bst6I	CTCTTC	1 cut(s)	48
BstAUI	TGTACA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	2 cut(s)	314, 926
BstF5I	GGATG	4 cut(s)	89, 841, 940, 940
BstKTI	GATC	4 cut(s)	552, 604, 643, 748
BstMBI	GATC	4 cut(s)	549, 601, 640, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 571
BstSFI	CTRYAG	1 cut(s)	982
BstV1I	GCAGC	5 cut(s)	235, 249, 858, 996, 1049
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	59
BstYI	RGATCY	1 cut(s)	601
Bsu15I	ATCGAT	1 cut(s)	217
BsuI	GTATCC	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	939, 1001
BsuTUI	ATCGAT	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	89, 841, 940, 940
BtsIMutI	CAGTG	5 cut(s)	228, 311, 586, 816, 988
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	1 cut(s)	891
CaiI	CAGNNNCTG	1 cut(s)	990
Cfr13I	GGNCC	1 cut(s)	703
ClaI	ATCGAT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	86, 121
CviAII	CATG	7 cut(s)	53, 59, 295, 439, 561, 637, 976
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	2 cut(s)	314, 926
DpnI	GATC	4 cut(s)	551, 603, 642, 747
DpnII	GATC	4 cut(s)	549, 601, 640, 745
EaeI	YGGCCR	2 cut(s)	937, 999
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	97, 596, 730
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	703
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	3 cut(s)	97, 596, 730
EcoT22I	ATGCAT	1 cut(s)	121
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	3 cut(s)	97, 596, 730
FaeI	CATG	7 cut(s)	56, 62, 298, 442, 564, 640, 979
FaqI	GGGAC	3 cut(s)	320, 810, 986
FatI	CATG	7 cut(s)	52, 58, 294, 438, 560, 636, 975
Fnu4HI	GCNGC	5 cut(s)	224, 238, 872, 985, 1038
FokI	GGATG	4 cut(s)	96, 828, 927, 947
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	5 cut(s)	224, 238, 872, 985, 1038
FspBI	CTAG	2 cut(s)	447, 681
GluI	GCNGC	5 cut(s)	224, 238, 872, 985, 1038
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	939, 1001
HapII	CCGG	1 cut(s)	1002
Hin1II	CATG	7 cut(s)	56, 62, 298, 442, 564, 640, 979
HinfI	GANTC	5 cut(s)	308, 322, 506, 720, 1021
HpaII	CCGG	1 cut(s)	1002
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	1 cut(s)	839
Hpy188III	TCNNGA	6 cut(s)	194, 260, 388, 547, 611, 1010
Hpy8I	GTNNAC	1 cut(s)	839
HpyAV	CCTTC	7 cut(s)	157, 163, 427, 526, 579, 608, 655
HpyCH4III	ACNGT	3 cut(s)	257, 384, 581
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	9 cut(s)	49, 119, 237, 271, 422, 782, 874, 984, 1037
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 571
HpyF3I	CTNAG	2 cut(s)	314, 926
HpySE526I	ACGT	1 cut(s)	906
Hsp92II	CATG	7 cut(s)	56, 62, 298, 442, 564, 640, 979
Kzo9I	GATC	4 cut(s)	549, 601, 640, 745
LmnI	GCTCC	2 cut(s)	155, 772
Lsp1109I	GCAGC	5 cut(s)	235, 249, 858, 996, 1049
LweI	GCATC	4 cut(s)	106, 128, 300, 829
MaeI	CTAG	2 cut(s)	447, 681
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	5 cut(s)	67, 333, 907, 956, 965
MalI	GATC	4 cut(s)	551, 603, 642, 747
MboI	GATC	4 cut(s)	549, 601, 640, 745
MboII	GAAGA	4 cut(s)	35, 544, 715, 718
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	2 cut(s)	39, 669
MlsI	TGGCCA	1 cut(s)	939
MluCI	AATT	5 cut(s)	136, 167, 537, 606, 697
MluNI	TGGCCA	1 cut(s)	939
MlyI	GAGTC	3 cut(s)	302, 500, 729
MnlI	CCTC	5 cut(s)	138, 275, 389, 752, 787
Mox20I	TGGCCA	1 cut(s)	939
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	939
MseI	TTAA	4 cut(s)	210, 242, 498, 903
MslI	CAYNNNNRTG	4 cut(s)	57, 63, 344, 753
Msp20I	TGGCCA	1 cut(s)	939
MspI	CCGG	1 cut(s)	1002
Mva1269I	GAATGC	2 cut(s)	457, 874
MwoI	GCNNNNNNNGC	2 cut(s)	482, 571
NdeII	GATC	4 cut(s)	549, 601, 640, 745
NlaIII	CATG	7 cut(s)	56, 62, 298, 442, 564, 640, 979
NlaIV	GGNNCC	2 cut(s)	705, 774
NmuCI	GTSAC	4 cut(s)	333, 907, 956, 965
NsiI	ATGCAT	1 cut(s)	121
PctI	GAATGC	2 cut(s)	457, 874
PdmI	GAANNNNTTC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	322, 1021
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	5 cut(s)	225, 239, 873, 986, 1039
PleI	GAGTC	3 cut(s)	302, 500, 728
PpsI	GAGTC	3 cut(s)	302, 500, 728
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	705, 774
PspPI	GGNCC	1 cut(s)	703
PstI	CTGCAG	1 cut(s)	986
PstNI	CAGNNNCTG	1 cut(s)	990
PsuI	RGATCY	1 cut(s)	601
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	4 cut(s)	57, 63, 344, 753
SaqAI	TTAA	4 cut(s)	210, 242, 498, 903
SatI	GCNGC	5 cut(s)	224, 238, 872, 985, 1038
Sau3AI	GATC	4 cut(s)	549, 601, 640, 745
Sau96I	GGNCC	1 cut(s)	703
SchI	GAGTC	3 cut(s)	302, 500, 729
SduI	GDGCHC	2 cut(s)	39, 669
SfaNI	GCATC	4 cut(s)	106, 128, 300, 829
SfcI	CTRYAG	1 cut(s)	982
SinI	GGWCC	1 cut(s)	703
SmiMI	CAYNNNNRTG	4 cut(s)	57, 63, 344, 753
Sse9I	AATT	5 cut(s)	136, 167, 537, 606, 697
SsiI	CCGC	2 cut(s)	622, 963
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	2 cut(s)	447, 681
StyI	CCWWGG	3 cut(s)	97, 596, 730
TaaI	ACNGT	3 cut(s)	257, 384, 581
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	2 cut(s)	171, 217
TasI	AATT	5 cut(s)	136, 167, 537, 606, 697
TatI	WGTACW	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	322, 1021
Tru1I	TTAA	4 cut(s)	210, 242, 498, 903
Tru9I	TTAA	4 cut(s)	210, 242, 498, 903
TscAI	CASTG	5 cut(s)	235, 318, 586, 816, 995
TseFI	GTSAC	4 cut(s)	333, 907, 956, 965
TseI	GCWGC	5 cut(s)	223, 237, 871, 984, 1037
Tsp45I	GTSAC	4 cut(s)	333, 907, 956, 965
TspDTI	ATGAA	2 cut(s)	145, 341
TspGWI	ACGGA	1 cut(s)	933
TspRI	CASTG	5 cut(s)	235, 318, 586, 816, 995
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	703
XapI	RAATTY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	2 cut(s)	447, 681
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.