Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

29326098 .. 29330846

Gene Structure 4749 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1233400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGATAATTTTGCCATTGGCACATTTATTATGGTGCTCTCTATTCTGCACCATCATGTACGCGGAAGTCGCCAGTACTCTAGTGAAGGATGTGATATTTTCCAAGGAAGATGGGTTTATGATGAATCATATCCCCTTTATACATCATCACAATGCTCCTTCATCGAGAAGGAATTCGATTGCCTACAAAATGGTCGTTCCGACAAATTCTATCTCAAATTCCGATGGCAGCCTACTCACTGCAACTTAACAAGGTTCAACAGTGAAGATTTCTTGCAGAGATTTAGAGGGAAAAGCATCATGTTTGTTGGAGACTCATTGAGTTTGAACCAGTGGCAGTCACTCACTTGTATGCTTCATACAGCGAATCCACAGACTCAATATAACCTGTACAGGACTGGCGGTCTATCCACATTCGCATTCCCAGCATACAATATGAAGGTCATGTTCTCTCGGAATGCATTTCTGGTTGATACAATAAACACAACTGCTGGTCGAGTTCTTAAACTCGACTCTATCGAAAGTGGGAAACTGTGGAGGAATAGTGATGTTTTGGTCTTCAACTCATGGCATTGGTGGCTTCACACCGGAAGGAAGCAACCTTGGGATCTTATTCAAGACGGAAGCCATACATACAAAGATATGGATCGCTTGGTTGCATACGAGAAAGCGCTCAAGACATGGGCTAGATGGGTTGATACAAATTTGGAATCGACAAAAACAAGAGTTTTCTTCCAAGGCGTTTCCCCAGATCATAATAATGGAAGTGAATGGGGAGAGGCAGCCTCAAAGCATTGTGAAGGGCAAACGCAACCAATGGCGAGGGATGAGTATCCGGCAGGTTCACATCCAGCAGAGGTAGTAGTAGAAAGAGTGCTGCGTTCAATGTCAAACACAGTTCATTTGCTAAATGTCACAACCCTTTCACAACTAAGAAAAGATGGGCATCCATCTGTGTACGGTCACGGCGGTCACAGGGACATGGACTGCAGCCACTGGTGTTTAGCCGGAGTTCCTGATACTTGGAATCAGCTTCTATACGCATCTCTGATACAAAGCAAAATCAGTTACTATGTGTATGTGGACTCGGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

366

Amino Acids

42.21

Weight (kDa)

6.96

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	30 - 82	4e-24	PMR5 N terminal Domain
PC-Esterase	PF13839	83 - 348	3.3e-95	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	830
AccII	CGCG	1 cut(s)	63
AciI	CCGC	3 cut(s)	63, 402, 969
AclWI	GGATC	2 cut(s)	615, 654
AcsI	RAATTY	4 cut(s)	173, 206, 218, 703
AfaI	GTAC	4 cut(s)	60, 77, 392, 959
AfeI	AGCGCT	1 cut(s)	672
AgsI	TTSAA	5 cut(s)	259, 328, 562, 617, 885
AhdI	GACNNNNNGTC	1 cut(s)	402
AluBI	AGCT	1 cut(s)	1033
AluI	AGCT	1 cut(s)	1033
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	615, 654
AlwNI	CAGNNNCTG	1 cut(s)	996
Aor51HI	AGCGCT	1 cut(s)	672
ApeKI	GCWGC	4 cut(s)	229, 782, 877, 990
ApoI	RAATTY	4 cut(s)	173, 206, 218, 703
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	241, 794, 864, 1002
BccI	CCATC	6 cut(s)	60, 105, 219, 684, 935, 958
BceAI	ACGGC	1 cut(s)	982
BciVI	GTATCC	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	2 cut(s)	81, 687
BfmI	CTRYAG	1 cut(s)	988
BfoI	RGCGCY	1 cut(s)	674
BfuAI	ACCTGC	1 cut(s)	830
BfuI	GTATCC	1 cut(s)	843
BisI	GCNGC	4 cut(s)	230, 783, 878, 991
BlsI	GCNGC	4 cut(s)	231, 784, 879, 992
BmcAI	AGTACT	1 cut(s)	77
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmsI	GCATC	3 cut(s)	306, 955, 1052
BpiI	GAAGAC	1 cut(s)	550
BplI	GAGNNNNNCTC	2 cut(s)	770, 802
BpuEI	CTTGAG	1 cut(s)	659
BsaBI	GATNNNNATC	3 cut(s)	645, 831, 945
BsaJI	CCNNGG	3 cut(s)	103, 602, 736
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bse1I	ACTGG	4 cut(s)	73, 331, 403, 1001
Bse8I	GATNNNNATC	3 cut(s)	645, 831, 945
BseDI	CCNNGG	3 cut(s)	103, 602, 736
BseGI	GGATG	4 cut(s)	95, 832, 847, 946
BseJI	GATNNNNATC	3 cut(s)	645, 831, 945
BseNI	ACTGG	4 cut(s)	73, 331, 403, 1001
BseXI	GCAGC	4 cut(s)	241, 794, 864, 1002
BseYI	CCCAGC	1 cut(s)	424
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	3 cut(s)	588, 836, 1008
BslFI	GGGAC	1 cut(s)	992
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	2 cut(s)	419, 463
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	3 cut(s)	607, 646, 751
BspACI	CCGC	3 cut(s)	63, 402, 969
BspFNI	CGCG	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	992
BspMI	ACCTGC	1 cut(s)	830
BspPI	GGATC	2 cut(s)	615, 654
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	4 cut(s)	73, 331, 403, 1001
BssECI	CCNNGG	3 cut(s)	103, 602, 736
BssMI	GATC	3 cut(s)	607, 646, 751
BssT1I	CCWWGG	3 cut(s)	103, 602, 736
Bst4CI	ACNGT	4 cut(s)	263, 534, 898, 962
BstAUI	TGTACA	1 cut(s)	390
BstDEI	CTNAG	1 cut(s)	932
BstF5I	GGATG	4 cut(s)	95, 832, 847, 946
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	674
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	3 cut(s)	610, 649, 754
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	607, 646, 751
BstMWI	GCNNNNNNNGC	3 cut(s)	69, 425, 577
BstSFI	CTRYAG	1 cut(s)	988
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	241, 794, 864, 1002
BstV2I	GAAGAC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	843
BtsCI	GGATG	4 cut(s)	95, 832, 847, 946
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	4 cut(s)	238, 268, 338, 994
BveI	ACCTGC	1 cut(s)	830
CaiI	CAGNNNCTG	1 cut(s)	996
CfoI	GCGC	1 cut(s)	673
Csp6I	GTAC	4 cut(s)	59, 76, 391, 958
CviAII	CATG	6 cut(s)	56, 301, 445, 567, 681, 982
CviJI	RGCY	8 cut(s)	232, 580, 627, 686, 785, 993, 1007, 1033
CviKI_1	RGCY	8 cut(s)	232, 580, 627, 686, 785, 993, 1007, 1033
CviQI	GTAC	4 cut(s)	59, 76, 391, 958
DdeI	CTNAG	1 cut(s)	932
DpnI	GATC	3 cut(s)	609, 648, 753
DpnII	GATC	3 cut(s)	607, 646, 751
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1105I	GACNNNNNGTC	1 cut(s)	402
Eco130I	CCWWGG	3 cut(s)	103, 602, 736
Eco47III	AGCGCT	1 cut(s)	672
EcoRI	GAATTC	1 cut(s)	173
EcoT14I	CCWWGG	3 cut(s)	103, 602, 736
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	3 cut(s)	103, 602, 736
FaeI	CATG	6 cut(s)	59, 304, 448, 570, 684, 985
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	6 cut(s)	55, 300, 444, 566, 680, 981
Fnu4HI	GCNGC	4 cut(s)	230, 783, 878, 991
FokI	GGATG	4 cut(s)	102, 834, 839, 933
Fsp4HI	GCNGC	4 cut(s)	230, 783, 878, 991
FspBI	CTAG	2 cut(s)	81, 687
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	4 cut(s)	230, 783, 878, 991
GsaI	CCCAGC	1 cut(s)	428
HaeII	RGCGCY	1 cut(s)	674
HapII	CCGG	3 cut(s)	588, 836, 1008
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	6 cut(s)	59, 304, 448, 570, 684, 985
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HinfI	GANTC	8 cut(s)	125, 314, 367, 376, 512, 710, 1027, 1085
HpaII	CCGG	3 cut(s)	588, 836, 1008
Hpy166II	GTNNAC	3 cut(s)	845, 958, 1084
Hpy188I	TCNGA	5 cut(s)	202, 224, 456, 1050, 1090
Hpy188III	TCNNGA	4 cut(s)	166, 617, 676, 1016
Hpy8I	GTNNAC	3 cut(s)	845, 958, 1084
HpyAV	CCTTC	6 cut(s)	80, 163, 169, 433, 585, 794
HpyCH4III	ACNGT	4 cut(s)	263, 534, 898, 962
HpyCH4V	TGCA	6 cut(s)	49, 243, 277, 461, 659, 990
HpyF10VI	GCNNNNNNNGC	3 cut(s)	69, 425, 577
HpyF3I	CTNAG	1 cut(s)	932
Hsp92II	CATG	6 cut(s)	59, 304, 448, 570, 684, 985
HspAI	GCGC	1 cut(s)	671
Kzo9I	GATC	3 cut(s)	607, 646, 751
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	4 cut(s)	241, 794, 864, 1002
LweI	GCATC	3 cut(s)	306, 955, 1052
MaeI	CTAG	2 cut(s)	81, 687
MaeIII	GTNAC	5 cut(s)	339, 913, 962, 971, 1067
MalI	GATC	3 cut(s)	609, 648, 753
MboI	GATC	3 cut(s)	607, 646, 751
MboII	GAAGA	4 cut(s)	120, 278, 550, 724
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	6 cut(s)	7, 173, 206, 218, 703, 1093
MlyI	GAGTC	4 cut(s)	308, 370, 506, 1079
MmeI	TCCRAC	2 cut(s)	225, 289
MnlI	CCTC	6 cut(s)	281, 531, 772, 796, 816, 850
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	173
MseI	TTAA	3 cut(s)	248, 504, 1096
MslI	CAYNNNNRTG	4 cut(s)	54, 151, 350, 759
MspI	CCGG	3 cut(s)	588, 836, 1008
Mva1269I	GAATGC	2 cut(s)	419, 463
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	69, 425, 577
NdeII	GATC	3 cut(s)	607, 646, 751
NlaIII	CATG	6 cut(s)	59, 304, 448, 570, 684, 985
NmuCI	GTSAC	4 cut(s)	339, 913, 962, 971
NsiI	ATGCAT	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PctI	GAATGC	2 cut(s)	419, 463
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	4 cut(s)	125, 367, 710, 1027
PkrI	GCNGC	4 cut(s)	231, 784, 879, 992
PleI	GAGTC	4 cut(s)	308, 370, 506, 1079
PpsI	GAGTC	4 cut(s)	308, 370, 506, 1079
PspFI	CCCAGC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	992
PstNI	CAGNNNCTG	1 cut(s)	996
PsuI	RGATCY	1 cut(s)	607
RsaI	GTAC	4 cut(s)	60, 77, 392, 959
RsaNI	GTAC	4 cut(s)	59, 76, 391, 958
RseI	CAYNNNNRTG	4 cut(s)	54, 151, 350, 759
SaqAI	TTAA	3 cut(s)	248, 504, 1096
SatI	GCNGC	4 cut(s)	230, 783, 878, 991
Sau3AI	GATC	3 cut(s)	607, 646, 751
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	4 cut(s)	308, 370, 506, 1079
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	257, 390, 444, 604, 844, 861, 1035
SfaNI	GCATC	3 cut(s)	306, 955, 1052
SfcI	CTRYAG	1 cut(s)	988
SmiMI	CAYNNNNRTG	4 cut(s)	54, 151, 350, 759
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
Sse9I	AATT	6 cut(s)	7, 173, 206, 218, 703, 1093
SsiI	CCGC	3 cut(s)	63, 402, 969
SspMI	CTAG	2 cut(s)	81, 687
StyI	CCWWGG	3 cut(s)	103, 602, 736
TaaI	ACNGT	4 cut(s)	263, 534, 898, 962
TaqI	TCGA	6 cut(s)	165, 177, 496, 510, 519, 713
TasI	AATT	6 cut(s)	7, 173, 206, 218, 703, 1093
TatI	WGTACW	2 cut(s)	75, 390
TfiI	GAWTC	4 cut(s)	125, 367, 710, 1027
Tru1I	TTAA	3 cut(s)	248, 504, 1096
Tru9I	TTAA	3 cut(s)	248, 504, 1096
TscAI	CASTG	4 cut(s)	245, 268, 338, 1001
TseFI	GTSAC	4 cut(s)	339, 913, 962, 971
TseI	GCWGC	4 cut(s)	229, 782, 877, 990
Tsp45I	GTSAC	4 cut(s)	339, 913, 962, 971
TspDTI	ATGAA	5 cut(s)	138, 151, 347, 452, 890
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	4 cut(s)	245, 268, 338, 1001
XapI	RAATTY	4 cut(s)	173, 206, 218, 703
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	2 cut(s)	81, 687
ZrmI	AGTACT	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.