Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

45438078 .. 45443055

Gene Structure 4978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGCTAATTTTTTCATAAGCACTGCTTTTATGGTGGTCACTCTTCTGCACTACCATGTACATGGAGATCATCAGCAGAAGCATTCTGACAGGGAAACTAAAGAAGCTGGAAATGAAGGATGTGATATGTTCCAAGGGAGGTGGGTTTCCGATGAGTCATATCCGCTCTACAATTCATCACAATGCTCCTTCGTAGAGAGAGAGTTCACTTGCATACAAAACGGCCGTCCGGACGAATTTTATCTCAAATTCCGGTGGCAGCCCACTGGTTGCAACTTAACAAGGTTCAACGGGGGAGATTTCTTGAAAAGATATAGAGGGAAGAGCTTCATGTTTGTTGGGGACTCGTTGAGTTTGAATCAATGGCAGTCACTCACTTGCATGCTTCATACAGCTGTTCCAGATGCCGACTATACACTTGTTAGGGCTGGAGACCTATCCACATTCACCTTCCCAGAATACAATGTTAAGGTGATGTTCTCTCGGAATGCATTTCTGGTCGATACAATAGCAACACCTGCTGGCCGAGTTCTTAAGCTCGACTCTATTGAAAGTGGGAAACTTTGGAAGGGAATTGACTTCTTGATCTTCAACACATGGCACTGGTGGCTGCACACTGGAAGGAAGCAACCTTGGGATCTTATTCAAGAAGGAAACAGTACCTATAAAGACATGGACCGGTTGGTTGCGTACGAGAAAGGGCTCAAAACATGGGCTAAATGGGTTGACACCAATGTGGACCAAACAAAAACCAGAGTCTTCTTCCAAGGAGTTTCCCCAGATCACAATAATGCAAGTGATTGGAAGGATCCTACTGCAAAAACTTGTGAGGGACAAATGCAACCAATGGCCGGGTCTCAGTATCCAGCAGGACCACATCCAGCAGAGCAAGTAGTAGAAAGAGTATTGCATTCCATGTCATTTCGAGTTTATTTGCTAAACGTGACGACCCTTTCACAACTAAGAAAAGATGGGCATCCATCTGTGTACGGCCATGGTGGTCACAAGGACATGGATTGCAGCCATTGGTGTCTTGCTGGAGTTCCGGATACATGGAATGAACTCCTATATGCTGCTCTTATACAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

363

Amino Acids

41.69

Weight (kDa)

6.42

Isoelectric Point (pI)

27.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	40 - 92	1.4e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	93 - 358	2.8e-95	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	166
AccIII	TCCGGA	2 cut(s)	229, 1045
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	3 cut(s)	645, 803, 816
AcoI	YGGCCR	4 cut(s)	223, 523, 849, 991
AcsI	RAATTY	2 cut(s)	236, 248
AfaI	GTAC	4 cut(s)	60, 661, 692, 989
AfiI	CCNNNNNNNGG	1 cut(s)	851
AflII	CTTAAG	1 cut(s)	533
AgeI	ACCGGT	1 cut(s)	678
AgsI	TTSAA	6 cut(s)	289, 307, 358, 551, 592, 647
AleI	CACNNNNGTG	1 cut(s)	734
AluBI	AGCT	5 cut(s)	107, 327, 395, 538, 1089
AluI	AGCT	5 cut(s)	107, 327, 395, 538, 1089
Alw26I	GTCTC	2 cut(s)	426, 861
AlwI	GGATC	3 cut(s)	645, 803, 816
Aor13HI	TCCGGA	2 cut(s)	229, 1045
AoxI	GGCC	4 cut(s)	223, 523, 849, 991
ApeKI	GCWGC	4 cut(s)	259, 610, 1020, 1073
ApoI	RAATTY	2 cut(s)	236, 248
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AsiGI	ACCGGT	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	676, 739, 872
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	2 cut(s)	439, 484
AvaII	GGWCC	3 cut(s)	676, 739, 872
BamHI	GGATCC	1 cut(s)	808
BanII	GRGCYC	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	4 cut(s)	271, 597, 1032, 1060
BccI	CCATC	2 cut(s)	965, 988
BceAI	ACGGC	3 cut(s)	210, 238, 1006
BciVI	GTATCC	2 cut(s)	873, 1042
BcnI	CCSGG	1 cut(s)	853
BcoDI	GTCTC	2 cut(s)	426, 861
BfaI	CTAG	1 cut(s)	1090
BfrI	CTTAAG	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	526
BfuI	GTATCC	2 cut(s)	873, 1042
BisI	GCNGC	4 cut(s)	260, 611, 1021, 1074
BlsI	GCNGC	4 cut(s)	261, 612, 1022, 1075
Bme1390I	CCNGG	1 cut(s)	853
Bme18I	GGWCC	3 cut(s)	676, 739, 872
BmgT120I	GGNCC	3 cut(s)	676, 739, 872
BmiI	GGNNCC	1 cut(s)	810
BmrFI	CCNGG	1 cut(s)	853
BmsI	GCATC	2 cut(s)	394, 985
BpiI	GAAGAC	1 cut(s)	751
BpmI	CTGGAG	2 cut(s)	450, 1059
BpuMI	CCSGG	1 cut(s)	853
BsaBI	GATNNNNATC	1 cut(s)	975
BsaI	GGTCTC	2 cut(s)	426, 861
BsaJI	CCNNGG	4 cut(s)	133, 632, 766, 994
BsaWI	WCCGGW	4 cut(s)	229, 252, 678, 1045
Bsc4I	CCNNNNNNNGG	1 cut(s)	851
Bse118I	RCCGGY	1 cut(s)	678
Bse1I	ACTGG	3 cut(s)	271, 608, 622
Bse8I	GATNNNNATC	1 cut(s)	975
BseAI	TCCGGA	2 cut(s)	229, 1045
BseDI	CCNNGG	4 cut(s)	133, 632, 766, 994
BseGI	GGATG	3 cut(s)	125, 877, 976
BseJI	GATNNNNATC	1 cut(s)	975
BseLI	CCNNNNNNNGG	1 cut(s)	851
BseMII	CTCAG	1 cut(s)	872
BseNI	ACTGG	3 cut(s)	271, 608, 622
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	4 cut(s)	271, 597, 1032, 1060
BsgI	GTGCAG	2 cut(s)	32, 596
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	4 cut(s)	225, 525, 851, 993
BshTI	ACCGGT	1 cut(s)	678
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	5 cut(s)	230, 253, 679, 852, 1046
BsiWI	CGTACG	1 cut(s)	690
BslFI	GGGAC	2 cut(s)	356, 846
BslI	CCNNNNNNNGG	1 cut(s)	851
BsmAI	GTCTC	2 cut(s)	426, 861
BsmFI	GGGAC	2 cut(s)	356, 846
BsmI	GAATGC	3 cut(s)	82, 493, 910
BsnI	GGCC	4 cut(s)	225, 525, 851, 993
Bso31I	GGTCTC	2 cut(s)	426, 861
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp13I	TCCGGA	2 cut(s)	229, 1045
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	67, 585, 637, 781, 808
Bsp19I	CCATGG	1 cut(s)	994
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	4 cut(s)	225, 525, 851, 993
BspCNI	CTCAG	1 cut(s)	871
BspEI	TCCGGA	2 cut(s)	229, 1045
BspLI	GGNNCC	1 cut(s)	810
BspMI	ACCTGC	1 cut(s)	526
BspPI	GGATC	3 cut(s)	645, 803, 816
BspQI	GCTCTTC	1 cut(s)	317
BspTI	CTTAAG	1 cut(s)	533
BspTNI	GGTCTC	2 cut(s)	426, 861
BsrBI	CCGCTC	1 cut(s)	166
BsrFI	RCCGGY	1 cut(s)	678
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	3 cut(s)	271, 608, 622
BssAI	RCCGGY	1 cut(s)	678
BssECI	CCNNGG	4 cut(s)	133, 632, 766, 994
BssMI	GATC	5 cut(s)	67, 585, 637, 781, 808
BssT1I	CCWWGG	4 cut(s)	133, 632, 766, 994
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	2 cut(s)	48, 317
BstAFI	CTTAAG	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	383, 523
BstDEI	CTNAG	2 cut(s)	858, 962
BstDSI	CCRYGG	1 cut(s)	994
BstF5I	GGATG	3 cut(s)	125, 877, 976
BstKTI	GATC	5 cut(s)	70, 588, 640, 784, 811
BstMAI	GTCTC	2 cut(s)	426, 861
BstMBI	GATC	5 cut(s)	67, 585, 637, 781, 808
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	518, 607
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	851
BstV1I	GCAGC	4 cut(s)	271, 597, 1032, 1060
BstV2I	GAAGAC	1 cut(s)	751
BstX2I	RGATCY	2 cut(s)	637, 808
BstXI	CCANNNNNNTGG	1 cut(s)	62
BstYI	RGATCY	2 cut(s)	637, 808
BstZI	CGGCCG	1 cut(s)	223
BsuI	GTATCC	2 cut(s)	873, 1042
BsuRI	GGCC	4 cut(s)	225, 525, 851, 993
BtgI	CCRYGG	1 cut(s)	994
BtsCI	GGATG	3 cut(s)	125, 877, 976
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 264, 601, 615
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	383, 523
Cfr10I	RCCGGY	1 cut(s)	678
Cfr13I	GGNCC	3 cut(s)	676, 739, 872
Csp6I	GTAC	4 cut(s)	59, 660, 691, 988
CspAI	ACCGGT	1 cut(s)	678
CspCI	CAANNNNNGTGG	2 cut(s)	122, 157
CviQI	GTAC	4 cut(s)	59, 660, 691, 988
DdeI	CTNAG	2 cut(s)	858, 962
DpnI	GATC	5 cut(s)	69, 587, 639, 783, 810
DpnII	GATC	5 cut(s)	67, 585, 637, 781, 808
EaeI	YGGCCR	4 cut(s)	223, 523, 849, 991
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	48, 317
EarI	CTCTTC	2 cut(s)	48, 317
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	4 cut(s)	133, 632, 766, 994
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	2 cut(s)	426, 861
Eco47I	GGWCC	3 cut(s)	676, 739, 872
Eco52I	CGGCCG	1 cut(s)	223
EcoT14I	CCWWGG	4 cut(s)	133, 632, 766, 994
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	4 cut(s)	133, 632, 766, 994
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	2 cut(s)	356, 846
Fnu4HI	GCNGC	4 cut(s)	260, 611, 1021, 1074
FokI	GGATG	3 cut(s)	132, 864, 963
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	4 cut(s)	260, 611, 1021, 1074
FspBI	CTAG	1 cut(s)	1090
GluI	GCNGC	4 cut(s)	260, 611, 1021, 1074
GsuI	CTGGAG	2 cut(s)	450, 1059
HaeIII	GGCC	4 cut(s)	225, 525, 851, 993
HapII	CCGG	5 cut(s)	230, 253, 679, 852, 1046
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HinfI	GANTC	5 cut(s)	155, 344, 358, 542, 756
HpaII	CCGG	5 cut(s)	230, 253, 679, 852, 1046
HphI	GGTGA	2 cut(s)	439, 484
Hpy166II	GTNNAC	4 cut(s)	207, 727, 739, 988
Hpy188I	TCNGA	3 cut(s)	88, 151, 486
Hpy188III	TCNNGA	6 cut(s)	230, 304, 401, 583, 647, 1046
Hpy8I	GTNNAC	4 cut(s)	207, 727, 739, 988
HpyAV	CCTTC	7 cut(s)	110, 199, 460, 562, 615, 644, 799
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	1 cut(s)	942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	518, 607
HpyF3I	CTNAG	2 cut(s)	858, 962
HpySE526I	ACGT	1 cut(s)	942
Kpn2I	TCCGGA	2 cut(s)	229, 1045
Kzo9I	GATC	5 cut(s)	67, 585, 637, 781, 808
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	4 cut(s)	271, 597, 1032, 1060
LweI	GCATC	2 cut(s)	394, 985
MaeI	CTAG	1 cut(s)	1090
MaeII	ACGT	1 cut(s)	942
MaeIII	GTNAC	4 cut(s)	37, 369, 943, 1001
MalI	GATC	5 cut(s)	69, 587, 639, 783, 810
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	5 cut(s)	67, 585, 637, 781, 808
MboII	GAAGA	5 cut(s)	35, 334, 580, 751, 754
MflI	RGATCY	2 cut(s)	637, 808
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	5 cut(s)	7, 172, 236, 248, 573
MlyI	GAGTC	4 cut(s)	164, 338, 536, 765
MnlI	CCTC	3 cut(s)	132, 311, 823
Mph1103I	ATGCAT	1 cut(s)	493
MroI	TCCGGA	2 cut(s)	229, 1045
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	3 cut(s)	278, 468, 534
MslI	CAYNNNNRTG	6 cut(s)	54, 60, 181, 380, 734, 789
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	533
MspI	CCGG	5 cut(s)	230, 253, 679, 852, 1046
MspR9I	CCNGG	1 cut(s)	853
Mva1269I	GAATGC	3 cut(s)	82, 493, 910
MwoI	GCNNNNNNNGC	2 cut(s)	518, 607
NciI	CCSGG	1 cut(s)	853
NcoI	CCATGG	1 cut(s)	994
NdeII	GATC	5 cut(s)	67, 585, 637, 781, 808
NlaIV	GGNNCC	1 cut(s)	810
NmeAIII	GCCGAG	1 cut(s)	551
NmuCI	GTSAC	4 cut(s)	37, 369, 943, 1001
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	385
OliI	CACNNNNGTG	1 cut(s)	734
PaeI	GCATGC	1 cut(s)	385
PaqCI	CACCTGC	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	3 cut(s)	82, 493, 910
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	358
Pfl23II	CGTACG	1 cut(s)	690
PinAI	ACCGGT	1 cut(s)	678
PkrI	GCNGC	4 cut(s)	261, 612, 1022, 1075
PleI	GAGTC	4 cut(s)	163, 338, 536, 764
PpsI	GAGTC	4 cut(s)	163, 338, 536, 764
PspLI	CGTACG	1 cut(s)	690
PspN4I	GGNNCC	1 cut(s)	810
PspPI	GGNCC	3 cut(s)	676, 739, 872
PsuI	RGATCY	2 cut(s)	637, 808
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	4 cut(s)	60, 661, 692, 989
RsaNI	GTAC	4 cut(s)	59, 660, 691, 988
RseI	CAYNNNNRTG	6 cut(s)	54, 60, 181, 380, 734, 789
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	278, 468, 534
SatI	GCNGC	4 cut(s)	260, 611, 1021, 1074
Sau3AI	GATC	5 cut(s)	67, 585, 637, 781, 808
Sau96I	GGNCC	3 cut(s)	676, 739, 872
SchI	GAGTC	4 cut(s)	164, 338, 536, 765
ScrFI	CCNGG	1 cut(s)	853
SduI	GDGCHC	1 cut(s)	705
SfaNI	GCATC	2 cut(s)	394, 985
SinI	GGWCC	3 cut(s)	676, 739, 872
SmiMI	CAYNNNNRTG	6 cut(s)	54, 60, 181, 380, 734, 789
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	7, 172, 236, 248, 573
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	1090
StyD4I	CCNGG	1 cut(s)	851
StyI	CCWWGG	4 cut(s)	133, 632, 766, 994
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	1 cut(s)	945
TaqI	TCGA	3 cut(s)	501, 540, 925
TasI	AATT	5 cut(s)	7, 172, 236, 248, 573
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	3 cut(s)	278, 468, 534
Tru9I	TTAA	3 cut(s)	278, 468, 534
TscAI	CASTG	4 cut(s)	28, 271, 608, 622
TseFI	GTSAC	4 cut(s)	37, 369, 943, 1001
TseI	GCWGC	4 cut(s)	259, 610, 1020, 1073
Tsp45I	GTSAC	4 cut(s)	37, 369, 943, 1001
TspDTI	ATGAA	6 cut(s)	4, 129, 165, 319, 377, 1074
TspRI	CASTG	4 cut(s)	28, 271, 608, 622
Vha464I	CTTAAG	1 cut(s)	533
VpaK11BI	GGWCC	3 cut(s)	676, 739, 872
XapI	RAATTY	2 cut(s)	236, 248
XceI	RCATGY	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	1090
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.