Rroxscaffold_5G00366360

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
48206658 .. 48207713
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366360.1

Sequence Viewer

Length: 1056 bp
ATGAATACAGTACTAGTTCTCATGCTTTTTGTTGTTTCGGCATACCAAGTACATAACACCGCCGGTTGCGATGTTTCAAACGGGAGCTGGGTTTATGATGACTCATATCCTCTCTATAACGCATCCAGCTGCTCCTTCATACTGAAAGCATTTGATTGTGTAGGTAATGGCCGCCCGGACAAAGATTATCTCAAATACAGATGGCAACCATCTGAGTGCAACTTGCCGACTTTCAACGGCTCTGATCTTCTAATGAGGTTCAAAGGGAAGAGCATCATGTTTGTCGGAGACTCGCTGAGTTCGAACCAATGGCAGTCACTAGCTTGCATGGTGTACACATCTATTACTCCACAGCCCAACTACACTTTGTTCAGGCAAGGCGAGCTCTCGACATTCGCGTTTCCGGAGTACAATGTCCAGCTCTTGTTCTCCCGGAATCCGCTTCTTGTGGATGTTGTTAGCACCAAGGTGGGGCGAGTCCTTAAACTCGACTCCATCTCTCTCGAAAACCAGAAGCTGTGGAATGAAACCAGCGTAGTGATCTTTGACACGTGGCATTGGTGGCTTCACGTCGGAAGGAAGAAGCCATGGGATTTAATTCAGGTGGGGAACCAGACCTACGAGGACATGGATCGATTGGTGGCATACGAAAAGGCTCTGAACACTTGGGCTAAGTGGGTGGACTCGAACGTGGACCTTGCAAAAACCAAGGTCTTCTTTCAAGGAGTCTCCCCTGATCACCAGAATGCATCAGACTGGACTCTAAACCCTAAAGCAGAAGCGATGAACTGCACTGCAGAATCCGAACCACTCCCTGCAGGTTCGGAAAACCCTAGTGCACATCCGGCAGAGCAAGTAGCGGAGAAAGTACTACGTAGCATGTTGAAGCCAGCCAGTTTGCTAAATGTCACAACTCTTTCACAGCTAAGAAAGGATGGGCATCCCTCTGTGTATGGGCTTGGTGGGAGTAGAGGCTTGGACTGCACGCATTGGTGCTTATCCGGTGTTCCTGATACTTGGAATGTGCTTCTCTATGCAGCTCTTACTGAAAGTTAA

Protein Analysis

351

Amino Acids

39.45

Weight (kDa)

5.66

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 22 - 74 2.3e-23 PMR5 N terminal Domain
PC-Esterase PF13839 75 - 346 2.8e-84 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 809
AccII CGCG 1 cut(s) 398
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 4 cut(s) 60, 172, 440, 860
AclWI GGATC 1 cut(s) 639
AcoI YGGCCR 1 cut(s) 169
AcvI CACGTG 1 cut(s) 552
AfaI GTAC 5 cut(s) 12, 51, 335, 410, 870
AfiI CCNNNNNNNGG 1 cut(s) 471
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 5 cut(s) 78, 235, 262, 722, 886
AhlI ACTAGT 1 cut(s) 13
AjiI CACGTC 1 cut(s) 571
AleI CACNNNNGTG 1 cut(s) 467
AluBI AGCT 8 cut(s) 87, 129, 323, 385, 421, 517, 925, 1040
AluI AGCT 8 cut(s) 87, 129, 323, 385, 421, 517, 925, 1040
Alw21I GWGCWC 2 cut(s) 387, 841
Alw26I GTCTC 2 cut(s) 282, 733
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 1 cut(s) 639
AlwNI CAGNNNCTG 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 1 cut(s) 169
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 2 cut(s) 129, 1037
AspS9I GGNCC 1 cut(s) 694
AsuC2I CCSGG 2 cut(s) 176, 433
AsuHPI GGTGA 1 cut(s) 731
AsuII TTCGAA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 694
BaeGI GKGCMC 1 cut(s) 841
BanII GRGCYC 1 cut(s) 387
BbrPI CACGTG 1 cut(s) 552
BbsI GAAGAC 1 cut(s) 706
Bbv12I GWGCWC 2 cut(s) 387, 841
BbvI GCAGC 2 cut(s) 116, 1049
BccI CCATC 4 cut(s) 195, 217, 503, 929
BceAI ACGGC 1 cut(s) 253
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 2 cut(s) 176, 433
BcoDI GTCTC 2 cut(s) 282, 733
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 3 cut(s) 14, 320, 834
BfmI CTRYAG 2 cut(s) 795, 816
BfuAI ACCTGC 1 cut(s) 809
BisI GCNGC 3 cut(s) 130, 172, 1038
BlsI GCNGC 3 cut(s) 131, 173, 1039
BmcAI AGTACT 2 cut(s) 12, 870
Bme1390I CCNGG 2 cut(s) 176, 433
Bme18I GGWCC 1 cut(s) 694
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 694
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 176, 433
BmsI GCATC 4 cut(s) 131, 282, 758, 949
BpiI GAAGAC 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 302
BpuMI CCSGG 2 cut(s) 176, 433
Bsa29I ATCGAT 1 cut(s) 634
BsaAI YACGTR 2 cut(s) 552, 875
BsaBI GATNNNNATC 1 cut(s) 939
BsaJI CCNNGG 3 cut(s) 465, 587, 708
BsaWI WCCGGW 2 cut(s) 403, 1001
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 761, 894
Bse8I GATNNNNATC 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 403
BseCI ATCGAT 1 cut(s) 634
BseDI CCNNGG 3 cut(s) 465, 587, 708
BseGI GGATG 5 cut(s) 122, 457, 841, 940, 940
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 1 cut(s) 471
BseMII CTCAG 2 cut(s) 204, 287
BseNI ACTGG 2 cut(s) 761, 894
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 2 cut(s) 116, 1049
BseYI CCCAGC 1 cut(s) 87
BsgI GTGCAG 2 cut(s) 775, 967
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 634
BsiHKAI GWGCWC 2 cut(s) 387, 841
BsiSI CCGG 6 cut(s) 63, 176, 404, 433, 845, 1002
BslI CCNNNNNNNGG 1 cut(s) 471
BsmAI GTCTC 2 cut(s) 282, 733
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 302
Bsp1286I GDGCHC 2 cut(s) 387, 841
Bsp13I TCCGGA 1 cut(s) 403
Bsp1407I TGTACA 1 cut(s) 333
Bsp143I GATC 4 cut(s) 244, 540, 631, 736
Bsp19I CCATGG 1 cut(s) 587
BspACI CCGC 4 cut(s) 60, 172, 440, 860
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 205, 288
BspDI ATCGAT 1 cut(s) 634
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 611
BspMAI CTGCAG 2 cut(s) 799, 820
BspMI ACCTGC 1 cut(s) 809
BspPI GGATC 1 cut(s) 639
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 333
BsrI ACTGG 2 cut(s) 761, 894
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 465, 587, 708
BssMI GATC 4 cut(s) 244, 540, 631, 736
BssT1I CCWWGG 3 cut(s) 465, 587, 708
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 263
BstAUI TGTACA 1 cut(s) 333
BstBAI YACGTR 2 cut(s) 552, 875
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 4 cut(s) 325, 383, 891, 986
BstDEI CTNAG 4 cut(s) 213, 296, 672, 926
BstDSI CCRYGG 1 cut(s) 587
BstF5I GGATG 5 cut(s) 122, 457, 841, 940, 940
BstFNI CGCG 1 cut(s) 398
BstKTI GATC 4 cut(s) 247, 543, 634, 739
BstMAI GTCTC 2 cut(s) 282, 733
BstMBI GATC 4 cut(s) 244, 540, 631, 736
BstMWI GCNNNNNNNGC 4 cut(s) 382, 562, 845, 981
BstNSI RCATGY 1 cut(s) 883
BstSCI CCNGG 2 cut(s) 174, 431
BstSFI CTRYAG 2 cut(s) 795, 816
BstSLI GKGCMC 1 cut(s) 841
BstSNI TACGTA 1 cut(s) 875
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 116, 1049
BstV2I GAAGAC 1 cut(s) 706
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 587
BtgZI GCGATG 2 cut(s) 84, 797
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 5 cut(s) 122, 457, 841, 940, 940
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 1 cut(s) 792
BveI ACCTGC 1 cut(s) 809
Cac8I GCNNGC 4 cut(s) 325, 383, 891, 986
CaiI CAGNNNCTG 1 cut(s) 517
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 694
ClaI ATCGAT 1 cut(s) 634
Csp6I GTAC 5 cut(s) 11, 50, 334, 409, 869
CviAII CATG 6 cut(s) 22, 277, 328, 588, 628, 880
CviQI GTAC 5 cut(s) 11, 50, 334, 409, 869
DdeI CTNAG 4 cut(s) 213, 296, 672, 926
DpnI GATC 4 cut(s) 246, 542, 633, 738
DpnII GATC 4 cut(s) 244, 540, 631, 736
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 1 cut(s) 385
Eco105I TACGTA 1 cut(s) 875
Eco130I CCWWGG 3 cut(s) 465, 587, 708
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 694
Eco53kI GAGCTC 1 cut(s) 385
Eco72I CACGTG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 385
EcoT14I CCWWGG 3 cut(s) 465, 587, 708
EcoT22I ATGCAT 1 cut(s) 751
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 3 cut(s) 465, 587, 708
FaeI CATG 6 cut(s) 25, 280, 331, 591, 631, 883
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FatI CATG 6 cut(s) 21, 276, 327, 587, 627, 879
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 130, 172, 1038
FokI GGATG 5 cut(s) 109, 464, 828, 927, 947
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 3 cut(s) 130, 172, 1038
FspBI CTAG 3 cut(s) 14, 320, 834
GluI GCNGC 3 cut(s) 130, 172, 1038
GsaI CCCAGC 1 cut(s) 91
HaeIII GGCC 1 cut(s) 171
HapII CCGG 6 cut(s) 63, 176, 404, 433, 845, 1002
Hin1II CATG 6 cut(s) 25, 280, 331, 591, 631, 883
HinfI GANTC 9 cut(s) 101, 290, 436, 477, 491, 683, 726, 760, 800
HpaII CCGG 6 cut(s) 63, 176, 404, 433, 845, 1002
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 5 cut(s) 334, 336, 682, 694, 839
Hpy188I TCNGA 8 cut(s) 214, 244, 287, 575, 660, 754, 805, 826
Hpy188III TCNNGA 4 cut(s) 388, 404, 503, 1010
Hpy8I GTNNAC 5 cut(s) 334, 336, 682, 694, 839
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 2 cut(s) 145, 570
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 4 cut(s) 551, 570, 690, 874
HpyF10VI GCNNNNNNNGC 4 cut(s) 382, 562, 845, 981
HpyF3I CTNAG 4 cut(s) 213, 296, 672, 926
HpySE526I ACGT 4 cut(s) 551, 570, 690, 874
Hsp92II CATG 6 cut(s) 25, 280, 331, 591, 631, 883
Kpn2I TCCGGA 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 4 cut(s) 244, 540, 631, 736
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 2 cut(s) 84, 137
Lsp1109I GCAGC 2 cut(s) 116, 1049
LweI GCATC 4 cut(s) 131, 282, 758, 949
MaeI CTAG 3 cut(s) 14, 320, 834
MaeII ACGT 4 cut(s) 551, 570, 690, 874
MaeIII GTNAC 2 cut(s) 315, 907
MalI GATC 4 cut(s) 246, 542, 633, 738
MboI GATC 4 cut(s) 244, 540, 631, 736
MboII GAAGA 4 cut(s) 239, 280, 592, 706
MhlI GDGCHC 2 cut(s) 387, 841
MluCI AATT 1 cut(s) 597
MlyI GAGTC 7 cut(s) 95, 284, 485, 486, 677, 735, 754
MmeI TCCRAC 2 cut(s) 265, 553
MnlI CCTC 5 cut(s) 120, 249, 616, 955, 965
Mph1103I ATGCAT 1 cut(s) 751
MroI TCCGGA 1 cut(s) 403
MseI TTAA 3 cut(s) 483, 596, 1054
MslI CAYNNNNRTG 3 cut(s) 214, 467, 744
MspA1I CMGCKG 1 cut(s) 129
MspI CCGG 6 cut(s) 63, 176, 404, 433, 845, 1002
MspR9I CCNGG 2 cut(s) 176, 433
Mva1269I GAATGC 1 cut(s) 751
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 4 cut(s) 382, 562, 845, 981
NciI CCSGG 2 cut(s) 176, 433
NcoI CCATGG 1 cut(s) 587
NdeII GATC 4 cut(s) 244, 540, 631, 736
NlaIII CATG 6 cut(s) 25, 280, 331, 591, 631, 883
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 2 cut(s) 315, 907
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 1 cut(s) 883
NspV TTCGAA 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 2 cut(s) 299, 395
PctI GAATGC 1 cut(s) 751
PfeI GAWTC 2 cut(s) 436, 800
PfoI TCCNGGA 1 cut(s) 431
PkrI GCNGC 3 cut(s) 131, 173, 1039
PleI GAGTC 7 cut(s) 95, 284, 485, 485, 677, 734, 754
PmaCI CACGTG 1 cut(s) 552
PmlI CACGTG 1 cut(s) 552
PpsI GAGTC 7 cut(s) 95, 284, 485, 485, 677, 734, 754
Ppu21I YACGTR 2 cut(s) 552, 875
Psp124BI GAGCTC 1 cut(s) 387
PspCI CACGTG 1 cut(s) 552
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 611
PspPI GGNCC 1 cut(s) 694
PsrI GAACNNNNNNTAC 2 cut(s) 602, 634
PstI CTGCAG 2 cut(s) 799, 820
PstNI CAGNNNCTG 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 129
RsaI GTAC 5 cut(s) 12, 51, 335, 410, 870
RsaNI GTAC 5 cut(s) 11, 50, 334, 409, 869
RseI CAYNNNNRTG 3 cut(s) 214, 467, 744
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 3 cut(s) 483, 596, 1054
SatI GCNGC 3 cut(s) 130, 172, 1038
Sau3AI GATC 4 cut(s) 244, 540, 631, 736
Sau96I GGNCC 1 cut(s) 694
SbfI CCTGCAGG 1 cut(s) 820
ScaI AGTACT 2 cut(s) 12, 870
SchI GAGTC 7 cut(s) 95, 284, 485, 486, 677, 735, 754
ScrFI CCNGG 2 cut(s) 176, 433
SdaI CCTGCAGG 1 cut(s) 820
SduI GDGCHC 2 cut(s) 387, 841
SfaNI GCATC 4 cut(s) 131, 282, 758, 949
SfcI CTRYAG 2 cut(s) 795, 816
SfuI TTCGAA 1 cut(s) 302
SinI GGWCC 1 cut(s) 694
SmiMI CAYNNNNRTG 3 cut(s) 214, 467, 744
SnaBI TACGTA 1 cut(s) 875
SpeI ACTAGT 1 cut(s) 13
Sse8387I CCTGCAGG 1 cut(s) 820
Sse9I AATT 1 cut(s) 597
SsiI CCGC 4 cut(s) 60, 172, 440, 860
SspMI CTAG 3 cut(s) 14, 320, 834
SstI GAGCTC 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 174, 431
StyI CCWWGG 3 cut(s) 465, 587, 708
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 4 cut(s) 554, 573, 693, 877
TaqI TCGA 6 cut(s) 302, 389, 489, 504, 634, 686
TasI AATT 1 cut(s) 597
TatI WGTACW 5 cut(s) 10, 49, 333, 408, 868
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 436, 800
Tru1I TTAA 3 cut(s) 483, 596, 1054
Tru9I TTAA 3 cut(s) 483, 596, 1054
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 2 cut(s) 315, 907
TseI GCWGC 2 cut(s) 129, 1037
Tsp45I GTSAC 2 cut(s) 315, 907
TspDTI ATGAA 4 cut(s) 17, 127, 540, 800
TspRI CASTG 1 cut(s) 799
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 1 cut(s) 694
XceI RCATGY 1 cut(s) 883
XspI CTAG 3 cut(s) 14, 320, 834
ZrmI AGTACT 2 cut(s) 12, 870
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.