Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

44231370 .. 44233749

Gene Structure 2380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGATGGTTTTGCAGTACTGGTAGTGCTGGTAGTGGTTTCTGTTGTGCAGCAACAAGTGCATGGGATTGGGGGATGTATCGATGTTTCTCGTGGGAATTGGGTTCATGATGATTCATACCCTCTTTATGAAGCTTCTAGCTGCCCCTTCATTGAGAAGGAGTTTGACTGTATAAAGAATGGTCGCCCAGACAAGGACTATCTCAAATACAGATGGCAGCCTCTTGGCTGCAACTTACCAAGATTCAATGGAATTGATCTTTTGAGGAGGCTAAGAGGGAAGAGCATCATGTTTATTGGGGACTCATTGAGTCTGAACCAATGGCAATCACTCGCCTGCTTGCTTCATACGGCTGTTCCAAATGCCAAATACACATTGGTCAGGTCTGGAGGACTCTCCGCATTCACATTTCCGGAATACAATATTAAGGTGTTGTTCTCCCGCAATGCCTTTCTCGTGGACATTATCAGCACAAGTGCTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

161

Amino Acids

17.99

Weight (kDa)

8.29

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	28 - 78	2.3e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	79 - 156	9e-26	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	2 cut(s)	399, 442
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	2 cut(s)	134, 141
AluI	AGCT	2 cut(s)	134, 141
Aor13HI	TCCGGA	1 cut(s)	412
ApeKI	GCWGC	4 cut(s)	49, 141, 217, 228
BauI	CACGAG	2 cut(s)	90, 455
BbvI	GCAGC	4 cut(s)	61, 128, 215, 229
BccI	CCATC	1 cut(s)	207
BceAI	ACGGC	1 cut(s)	366
BfaI	CTAG	1 cut(s)	138
BisI	GCNGC	4 cut(s)	50, 142, 218, 229
BlsI	GCNGC	4 cut(s)	51, 143, 219, 230
BmcAI	AGTACT	1 cut(s)	18
BmsI	GCATC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	451
BseAI	TCCGGA	1 cut(s)	412
BseCI	ATCGAT	1 cut(s)	81
BseGI	GGATG	2 cut(s)	10, 80
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	451
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	280
BseXI	GCAGC	4 cut(s)	61, 128, 215, 229
BseYI	CCCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	68
BshVI	ATCGAT	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	413
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	401
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	399, 442
BspDI	ATCGAT	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	106
BspQI	GCTCTTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	1 cut(s)	256
BssSI	CACGAG	2 cut(s)	90, 455
Bst2BI	CACGAG	2 cut(s)	90, 455
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	58
BstC8I	GCNNGC	2 cut(s)	337, 341
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	10, 80
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstV1I	GCAGC	4 cut(s)	61, 128, 215, 229
Bsu15I	ATCGAT	1 cut(s)	81
BsuTUI	ATCGAT	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	10, 80
Cac8I	GCNNGC	2 cut(s)	337, 341
CciI	TCATGA	1 cut(s)	106
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	3 cut(s)	62, 107, 289
CviJI	RGCY	6 cut(s)	134, 141, 220, 228, 271, 353
CviKI_1	RGCY	6 cut(s)	134, 141, 220, 228, 271, 353
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
FaeI	CATG	3 cut(s)	65, 110, 292
FaiI	YATR	7 cut(s)	63, 108, 118, 129, 173, 290, 348
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	3 cut(s)	61, 106, 288
FauI	CCCGC	1 cut(s)	449
Fnu4HI	GCNGC	4 cut(s)	50, 142, 218, 229
FokI	GGATG	2 cut(s)	17, 87
Fsp4HI	GCNGC	4 cut(s)	50, 142, 218, 229
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	4 cut(s)	50, 142, 218, 229
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	408
HapII	CCGG	1 cut(s)	413
Hin1II	CATG	3 cut(s)	65, 110, 292
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	5 cut(s)	113, 243, 302, 310, 393
HpaII	CCGG	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	107, 387, 413
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	151, 157
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4V	TGCA	4 cut(s)	14, 49, 61, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	3 cut(s)	65, 110, 292
Kpn2I	TCCGGA	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	275
LpnPI	CCDG	8 cut(s)	5, 14, 201, 349, 367, 372, 426, 465
Lsp1109I	GCAGC	4 cut(s)	61, 128, 215, 229
LweI	GCATC	1 cut(s)	294
MaeI	CTAG	1 cut(s)	138
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	292
MluCI	AATT	2 cut(s)	97, 252
MlyI	GAGTC	3 cut(s)	296, 319, 387
MnlI	CCTC	6 cut(s)	132, 231, 258, 261, 269, 383
MroI	TCCGGA	1 cut(s)	412
MseI	TTAA	1 cut(s)	426
MspI	CCGG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	58
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	3 cut(s)	65, 110, 292
PagI	TCATGA	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	275
PctI	GAATGC	1 cut(s)	401
PfeI	GAWTC	2 cut(s)	113, 243
PkrI	GCNGC	4 cut(s)	51, 143, 219, 230
PleI	GAGTC	3 cut(s)	296, 318, 387
PpsI	GAGTC	3 cut(s)	296, 318, 387
PspFI	CCCAGC	1 cut(s)	479
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	4 cut(s)	50, 142, 218, 229
Sau3AI	GATC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	18
SchI	GAGTC	3 cut(s)	296, 319, 387
SetI	ASST	4 cut(s)	136, 143, 386, 432
SfaNI	GCATC	1 cut(s)	294
Sse9I	AATT	2 cut(s)	97, 252
SsiI	CCGC	2 cut(s)	399, 442
SspI	AATATT	1 cut(s)	424
SspMI	CTAG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	81
TasI	AATT	2 cut(s)	97, 252
TatI	WGTACW	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	113, 243
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseI	GCWGC	4 cut(s)	49, 141, 217, 228
TspDTI	ATGAA	5 cut(s)	95, 105, 139, 144, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	1 cut(s)	138
ZrmI	AGTACT	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.