Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003567.1

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Forward (+)

56763 .. 57797

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003567.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atgctttttgttgtttcggcataccaagtacataacaccgccggttgcgatgtttcaaacgggagctgggtttatgatgactcatatcctctctataacgcatctagctgctccttcatactgaaagcatttgattgtgtaggtaatggccgcccggacaaagattatctcaaatacagatggcaaccatctgagtgcaacttaccgacttttaacggcactgatcttctaatgaggttcaaagggaagagcatcatgtttgtcggagactcgctgagttcgaaccaatggcagtcactagcttgcatggtgtacacatctattactccacagcccaactacactttgttcaggcaaggcgagctctcgacattcgcgttcccggagtacaatgtccagctcttgttctcccggaatccgcttcttgtggatgttgttagcaccaaggtgggacgagtccttaaactcgactccatctcgctcgaaaaccagaagctgtggaatgaaaccagcgtagtgatctttgacacgtggcattggtggcttcacgtcggaaggaagcagccatgggatttaattcaggtggggaaccagacctacgaggacatggatcggttggtggcatacgaaaaggctctgaacacttgggctaagtgggtggactcgaacgtggaccttgcaaaaaccaaggtcttcttccaaggagtctcccctgaccaccagaatgcatcagactggacgctaaaccctaaatccgaagcgatgaactgcactgcagaatccgaaccactccctgcaggttcggaaaaccctagtgcacatccggcagagcaagtagcggagaaagtactacgtagcatgttgaagccagccagtttgctaaatgtcacaactctttcacatctaagaaaggatgggcatccctctgtgtatgggcttggtgggagtagaggcttggactgcacgcattggtgcttatctggtgttcctgatacttggaatgtgcttctctatgcagctcttactgaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

344

Amino Acids

38.72

Weight (kDa)

5.62

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	788
AccII	CGCG	1 cut(s)	377
AciI	CCGC	4 cut(s)	39, 151, 419, 839
AclWI	GGATC	1 cut(s)	618
AcoI	YGGCCR	1 cut(s)	148
AcvI	CACGTG	1 cut(s)	531
AfaI	GTAC	4 cut(s)	30, 314, 389, 849
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	3 cut(s)	57, 241, 865
AjiI	CACGTC	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	2 cut(s)	680, 712
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	7 cut(s)	66, 108, 302, 364, 400, 496, 1019
AluI	AGCT	7 cut(s)	66, 108, 302, 364, 400, 496, 1019
Alw21I	GWGCWC	2 cut(s)	366, 820
Alw26I	GTCTC	2 cut(s)	261, 712
Alw44I	GTGCAC	1 cut(s)	816
AlwI	GGATC	1 cut(s)	618
AlwNI	CAGNNNCTG	1 cut(s)	496
AoxI	GGCC	1 cut(s)	148
ApaLI	GTGCAC	1 cut(s)	816
ApeKI	GCWGC	3 cut(s)	108, 562, 1016
AspS9I	GGNCC	1 cut(s)	673
AsuC2I	CCSGG	3 cut(s)	155, 383, 412
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	366
BbrPI	CACGTG	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	2 cut(s)	366, 820
BbvI	GCAGC	3 cut(s)	95, 574, 1028
BccI	CCATC	4 cut(s)	174, 196, 482, 908
BceAI	ACGGC	1 cut(s)	232
BcnI	CCSGG	3 cut(s)	155, 383, 412
BcoDI	GTCTC	2 cut(s)	261, 712
BfaI	CTAG	3 cut(s)	105, 299, 813
BfmI	CTRYAG	2 cut(s)	774, 795
BfuAI	ACCTGC	1 cut(s)	788
BisI	GCNGC	4 cut(s)	109, 151, 563, 1017
BlsI	GCNGC	4 cut(s)	110, 152, 564, 1018
BmcAI	AGTACT	1 cut(s)	849
Bme1390I	CCNGG	3 cut(s)	155, 383, 412
Bme18I	GGWCC	1 cut(s)	673
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	1 cut(s)	590
BmrFI	CCNGG	3 cut(s)	155, 383, 412
BmsI	GCATC	4 cut(s)	110, 261, 737, 928
BpiI	GAAGAC	1 cut(s)	685
Bpu14I	TTCGAA	1 cut(s)	281
BpuMI	CCSGG	3 cut(s)	155, 383, 412
BsaAI	YACGTR	2 cut(s)	531, 854
BsaBI	GATNNNNATC	1 cut(s)	918
BsaJI	CCNNGG	4 cut(s)	444, 566, 687, 700
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	740, 873
Bse8I	GATNNNNATC	1 cut(s)	918
BseDI	CCNNGG	4 cut(s)	444, 566, 687, 700
BseGI	GGATG	4 cut(s)	436, 820, 919, 919
BseJI	GATNNNNATC	1 cut(s)	918
BseMII	CTCAG	2 cut(s)	183, 266
BseNI	ACTGG	2 cut(s)	740, 873
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	3 cut(s)	95, 574, 1028
BseYI	CCCAGC	1 cut(s)	66
BsgI	GTGCAG	2 cut(s)	754, 946
Bsh1236I	CGCG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	366, 820
BsiSI	CCGG	5 cut(s)	42, 155, 383, 412, 824
BslFI	GGGAC	1 cut(s)	465
BsmAI	GTCTC	2 cut(s)	261, 712
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	730
BsnI	GGCC	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	366, 820
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	223, 519, 610
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	4 cut(s)	39, 151, 419, 839
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	184, 267
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	590
BspMAI	CTGCAG	2 cut(s)	778, 799
BspMI	ACCTGC	1 cut(s)	788
BspPI	GGATC	1 cut(s)	618
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	740, 873
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	444, 566, 687, 700
BssMI	GATC	3 cut(s)	223, 519, 610
BssT1I	CCWWGG	4 cut(s)	444, 566, 687, 700
Bst6I	CTCTTC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	312
BstBAI	YACGTR	2 cut(s)	531, 854
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	4 cut(s)	304, 362, 870, 965
BstDEI	CTNAG	4 cut(s)	192, 275, 651, 905
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	4 cut(s)	436, 820, 919, 919
BstFNI	CGCG	1 cut(s)	377
BstKTI	GATC	3 cut(s)	226, 522, 613
BstMAI	GTCTC	2 cut(s)	261, 712
BstMBI	GATC	3 cut(s)	223, 519, 610
BstMWI	GCNNNNNNNGC	4 cut(s)	361, 541, 824, 960
BstNSI	RCATGY	1 cut(s)	862
BstSCI	CCNGG	3 cut(s)	153, 381, 410
BstSFI	CTRYAG	2 cut(s)	774, 795
BstSLI	GKGCMC	1 cut(s)	820
BstSNI	TACGTA	1 cut(s)	854
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	3 cut(s)	95, 574, 1028
BstV2I	GAAGAC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	566
BtgZI	GCGATG	2 cut(s)	63, 776
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	4 cut(s)	436, 820, 919, 919
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	219, 771
BveI	ACCTGC	1 cut(s)	788
Cac8I	GCNNGC	4 cut(s)	304, 362, 870, 965
CaiI	CAGNNNCTG	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	673
CseI	GACGC	1 cut(s)	748
Csp6I	GTAC	4 cut(s)	29, 313, 388, 848
CviAII	CATG	5 cut(s)	256, 307, 567, 607, 859
CviQI	GTAC	4 cut(s)	29, 313, 388, 848
DdeI	CTNAG	4 cut(s)	192, 275, 651, 905
DpnI	GATC	3 cut(s)	225, 521, 612
DpnII	GATC	3 cut(s)	223, 519, 610
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	364
Eco105I	TACGTA	1 cut(s)	854
Eco130I	CCWWGG	4 cut(s)	444, 566, 687, 700
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	673
Eco53kI	GAGCTC	1 cut(s)	364
Eco72I	CACGTG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	364
EcoT14I	CCWWGG	4 cut(s)	444, 566, 687, 700
EcoT22I	ATGCAT	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	366
ErhI	CCWWGG	4 cut(s)	444, 566, 687, 700
FaeI	CATG	5 cut(s)	259, 310, 570, 610, 862
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	5 cut(s)	255, 306, 566, 606, 858
Fnu4HI	GCNGC	4 cut(s)	109, 151, 563, 1017
FokI	GGATG	4 cut(s)	443, 807, 906, 926
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	4 cut(s)	109, 151, 563, 1017
FspBI	CTAG	3 cut(s)	105, 299, 813
GluI	GCNGC	4 cut(s)	109, 151, 563, 1017
GsaI	CCCAGC	1 cut(s)	70
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	5 cut(s)	42, 155, 383, 412, 824
HgaI	GACGC	1 cut(s)	748
Hin1II	CATG	5 cut(s)	259, 310, 570, 610, 862
HinfI	GANTC	8 cut(s)	80, 269, 415, 456, 470, 662, 705, 779
HpaII	CCGG	5 cut(s)	42, 155, 383, 412, 824
Hpy166II	GTNNAC	5 cut(s)	313, 315, 661, 673, 818
Hpy188I	TCNGA	8 cut(s)	193, 266, 554, 639, 733, 757, 784, 805
Hpy188III	TCNNGA	2 cut(s)	367, 989
Hpy8I	GTNNAC	5 cut(s)	313, 315, 661, 673, 818
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	2 cut(s)	124, 549
HpyCH4IV	ACGT	4 cut(s)	530, 549, 669, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	361, 541, 824, 960
HpyF3I	CTNAG	4 cut(s)	192, 275, 651, 905
HpySE526I	ACGT	4 cut(s)	530, 549, 669, 853
Hsp92II	CATG	5 cut(s)	259, 310, 570, 610, 862
Kzo9I	GATC	3 cut(s)	223, 519, 610
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	63, 116
Lsp1109I	GCAGC	3 cut(s)	95, 574, 1028
LweI	GCATC	4 cut(s)	110, 261, 737, 928
MaeI	CTAG	3 cut(s)	105, 299, 813
MaeII	ACGT	4 cut(s)	530, 549, 669, 853
MaeIII	GTNAC	2 cut(s)	294, 886
MalI	GATC	3 cut(s)	225, 521, 612
MboI	GATC	3 cut(s)	223, 519, 610
MboII	GAAGA	4 cut(s)	218, 259, 685, 688
MhlI	GDGCHC	2 cut(s)	366, 820
MluCI	AATT	1 cut(s)	576
MlyI	GAGTC	6 cut(s)	74, 263, 464, 465, 656, 714
MmeI	TCCRAC	2 cut(s)	244, 532
MnlI	CCTC	5 cut(s)	99, 228, 595, 934, 944
Mph1103I	ATGCAT	1 cut(s)	730
MseI	TTAA	4 cut(s)	213, 462, 575, 1033
MslI	CAYNNNNRTG	3 cut(s)	193, 446, 723
MspI	CCGG	5 cut(s)	42, 155, 383, 412, 824
MspR9I	CCNGG	3 cut(s)	155, 383, 412
Mva1269I	GAATGC	1 cut(s)	730
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	361, 541, 824, 960
NciI	CCSGG	3 cut(s)	155, 383, 412
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	3 cut(s)	223, 519, 610
NlaIII	CATG	5 cut(s)	259, 310, 570, 610, 862
NlaIV	GGNNCC	1 cut(s)	590
NmuCI	GTSAC	2 cut(s)	294, 886
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	1 cut(s)	862
NspV	TTCGAA	1 cut(s)	281
OliI	CACNNNNGTG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	242
PcsI	WCGNNNNNNNCGW	2 cut(s)	278, 374
PctI	GAATGC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	415, 779
PfoI	TCCNGGA	2 cut(s)	381, 410
PkrI	GCNGC	4 cut(s)	110, 152, 564, 1018
PleI	GAGTC	6 cut(s)	74, 263, 464, 464, 656, 713
PmaCI	CACGTG	1 cut(s)	531
PmlI	CACGTG	1 cut(s)	531
PpsI	GAGTC	6 cut(s)	74, 263, 464, 464, 656, 713
Ppu21I	YACGTR	2 cut(s)	531, 854
Psp124BI	GAGCTC	1 cut(s)	366
PspCI	CACGTG	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	590
PspPI	GGNCC	1 cut(s)	673
PsrI	GAACNNNNNNTAC	2 cut(s)	581, 613
PstI	CTGCAG	2 cut(s)	778, 799
PstNI	CAGNNNCTG	1 cut(s)	496
RsaI	GTAC	4 cut(s)	30, 314, 389, 849
RsaNI	GTAC	4 cut(s)	29, 313, 388, 848
RseI	CAYNNNNRTG	3 cut(s)	193, 446, 723
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	213, 462, 575, 1033
SatI	GCNGC	4 cut(s)	109, 151, 563, 1017
Sau3AI	GATC	3 cut(s)	223, 519, 610
Sau96I	GGNCC	1 cut(s)	673
SbfI	CCTGCAGG	1 cut(s)	799
ScaI	AGTACT	1 cut(s)	849
SchI	GAGTC	6 cut(s)	74, 263, 464, 465, 656, 714
ScrFI	CCNGG	3 cut(s)	155, 383, 412
SdaI	CCTGCAGG	1 cut(s)	799
SduI	GDGCHC	2 cut(s)	366, 820
SfaNI	GCATC	4 cut(s)	110, 261, 737, 928
SfcI	CTRYAG	2 cut(s)	774, 795
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	3 cut(s)	193, 446, 723
SnaBI	TACGTA	1 cut(s)	854
Sse8387I	CCTGCAGG	1 cut(s)	799
Sse9I	AATT	1 cut(s)	576
SsiI	CCGC	4 cut(s)	39, 151, 419, 839
SspMI	CTAG	3 cut(s)	105, 299, 813
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	153, 381, 410
StyI	CCWWGG	4 cut(s)	444, 566, 687, 700
TaiI	ACGT	4 cut(s)	533, 552, 672, 856
TaqI	TCGA	5 cut(s)	281, 368, 468, 483, 665
TasI	AATT	1 cut(s)	576
TatI	WGTACW	4 cut(s)	28, 312, 387, 847
TauI	GCSGC	1 cut(s)	153
TfiI	GAWTC	2 cut(s)	415, 779
Tru1I	TTAA	4 cut(s)	213, 462, 575, 1033
Tru9I	TTAA	4 cut(s)	213, 462, 575, 1033
TscAI	CASTG	2 cut(s)	226, 778
TseFI	GTSAC	2 cut(s)	294, 886
TseI	GCWGC	3 cut(s)	108, 562, 1016
Tsp45I	GTSAC	2 cut(s)	294, 886
TspDTI	ATGAA	3 cut(s)	106, 519, 779
TspRI	CASTG	2 cut(s)	226, 778
VneI	GTGCAC	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	673
XceI	RCATGY	1 cut(s)	862
XspI	CTAG	3 cut(s)	105, 299, 813
ZrmI	AGTACT	1 cut(s)	849
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.