Prupe.3G108300_v2.0.a1

Protein trichome birefringence-like 43

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
8713526 .. 8718564
5039 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G108300.2

Sequence Viewer

Length: 1134 bp
ATGACATTCACCATACATGTACATTCTTCCATTTCATGTTCTCTCTGTGCGTATATATATGTATGTATAGTTGGTGCTACGCTAGTACTGCTAATTGTACTTTCCGTTCTGCATCACGAAGTGCATGGAGGACTTGTAGGGAGTGATATCGACGGCTGTGATGTGTCTCAAGGCAACTGGGTTTTTGATGATTCATATCCTCTTTATGCCGCGCCTAGCTGCCCCTTCCTTGAGAAAGTGTTTGACTGCGTAAAGAATGGTCGCCCTGATAGAGACTACCTCAAATATAGATGGCAGCCCTCTGCCTGCAGCTTACCAAGATTCAATGGTAGTCGTTTGTTGACAGAACTTAGAGGGAAAAGCATCATGTTTATTGGGGACTCGTTGAGTTTGAACCAATGGCAGTCACTTACCTGCATGCTTTATACATCTGTTCCAGAGGCCAAATACACATCGGTCAGGACTGGAGGACTCTCCACATTCACATTCCTGGAATACAATGTTAAACTGTTGTTCTCCCGCAATGCCTTAATTGTGAACATTGTACGCACACCTGATGGCCGAATCCTAAAACTTGACTCAATCTCAACTCAAGATGACAAACTGTGGTCCGGAGTCGACGTATTGATCTTCAACATGTGGCATTGGTGGGTTCACACCGGCAGAAAGCAACCATGGAACTTTATTCGAGTGGGGAATGAAACTTATAAGGACATGGATCGCTTGGTTGCATACGAGAAGGCACTGCACACTTGGGCAACATGGGTAGACTCCAATGTGGACTCTAACAAAACCAAGGTCTTCTTCCAGGGTGTTTCTCCAGATCATAGCAATGGAAGAGAGTGGGGTGATCCTCAAGCAAATAACTGCAGTGCACAATCAGACCCACTACCAGGTCCAAACTATCCAGGAGAAGCACATCCAGCAGAGAAAGTAGTAGAGAAAGTGTTACGTACCATGTCAAAGCCAGTCCATTTGCTGAATGTTACAACTCTTTCACAACTTAGAAAAGATGGGCACCCGTCTGTCTACGGCCTTGGTGGGCACAGGGGCTTGGACTGCACCCATTGGTGTTTAGCCGGAGTACCTGATACTTGGAATGTGCTTCTTTATGCAGCTCTTACTCAAAATTAG

Protein Analysis

378

Amino Acids

42.37

Weight (kDa)

6.91

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 422
AccB1I GGYRCC 1 cut(s) 1017
AccI GTMKAC 3 cut(s) 618, 768, 1029
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 611
AciI CCGC 2 cut(s) 210, 520
AclWI GGATC 2 cut(s) 726, 845
AcoI YGGCCR 1 cut(s) 559
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 6 cut(s) 21, 87, 99, 546, 955, 1086
AfiI CCNNNNNNNGG 1 cut(s) 893
AflIII ACRYGT 2 cut(s) 16, 636
AgsI TTSAA 3 cut(s) 325, 394, 634
AjnI CCWGG 4 cut(s) 489, 807, 892, 907
AjuI GAANNNNNNNTTGG 2 cut(s) 788, 820
AluBI AGCT 3 cut(s) 219, 312, 1118
AluI AGCT 3 cut(s) 219, 312, 1118
Alw21I GWGCWC 1 cut(s) 877
Alw26I GTCTC 2 cut(s) 171, 267
Alw44I GTGCAC 1 cut(s) 873
AlwI GGATC 2 cut(s) 726, 845
Aor13HI TCCGGA 1 cut(s) 611
AoxI GGCC 3 cut(s) 441, 559, 1033
ApaLI GTGCAC 1 cut(s) 873
ApeKI GCWGC 4 cut(s) 219, 295, 309, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 783, 815
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 2 cut(s) 609, 896
AsuHPI GGTGA 1 cut(s) 860
AvaII GGWCC 2 cut(s) 609, 896
BaeGI GKGCMC 3 cut(s) 877, 1020, 1047
BanI GGYRCC 1 cut(s) 1017
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 4 cut(s) 206, 307, 321, 1127
BccI CCATC 3 cut(s) 285, 551, 1007
BceAI ACGGC 2 cut(s) 169, 1048
BciT130I CCWGG 4 cut(s) 491, 809, 894, 909
BcoDI GTCTC 2 cut(s) 171, 267
BfaI CTAG 2 cut(s) 83, 216
BfmI CTRYAG 2 cut(s) 307, 868
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 5 cut(s) 210, 220, 296, 310, 1116
BlsI GCNGC 5 cut(s) 211, 221, 297, 311, 1117
BmcAI AGTACT 1 cut(s) 87
Bme1390I CCNGG 4 cut(s) 491, 809, 894, 909
Bme18I GGWCC 2 cut(s) 609, 896
BmgT120I GGNCC 2 cut(s) 609, 896
BmiI GGNNCC 1 cut(s) 1019
BmrFI CCNGG 4 cut(s) 491, 809, 894, 909
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 121, 372
BmuI ACTGGG 1 cut(s) 187
BpiI GAAGAC 1 cut(s) 793
BplI GAGNNNNNCTC 2 cut(s) 264, 296
BpmI CTGGAG 2 cut(s) 486, 804
BpuEI CTTGAG 4 cut(s) 153, 251, 576, 840
BsaAI YACGTR 1 cut(s) 953
BsaBI GATNNNNATC 1 cut(s) 195
BsaJI CCNNGG 4 cut(s) 674, 795, 808, 1036
BsaWI WCCGGW 1 cut(s) 611
BsaXI ACNNNNNCTCC 4 cut(s) 120, 150, 606, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 893
Bse118I RCCGGY 1 cut(s) 659
Bse1I ACTGG 3 cut(s) 182, 469, 968
Bse3DI GCAATG 2 cut(s) 529, 838
Bse8I GATNNNNATC 1 cut(s) 195
BseAI TCCGGA 1 cut(s) 611
BseBI CCWGG 4 cut(s) 491, 809, 894, 909
BseDI CCNNGG 4 cut(s) 674, 795, 808, 1036
BseGI GGATG 1 cut(s) 919
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 893
BseMI GCAATG 2 cut(s) 529, 838
BseNI ACTGG 3 cut(s) 182, 469, 968
BseSI GKGCMC 3 cut(s) 877, 1020, 1047
BseXI GCAGC 4 cut(s) 206, 307, 321, 1127
BsgI GTGCAG 2 cut(s) 731, 1045
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 3 cut(s) 443, 561, 1035
BshNI GGYRCC 1 cut(s) 1017
BsiHKAI GWGCWC 1 cut(s) 877
BsiSI CCGG 3 cut(s) 612, 660, 1080
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 893
BsmAI GTCTC 2 cut(s) 171, 267
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 3 cut(s) 443, 561, 1035
Bsp1286I GDGCHC 3 cut(s) 877, 1020, 1047
Bsp13I TCCGGA 1 cut(s) 611
Bsp1407I TGTACA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 627, 718, 823, 850
Bsp19I CCATGG 1 cut(s) 674
BspACI CCGC 2 cut(s) 210, 520
BspANI GGCC 3 cut(s) 443, 561, 1035
BspEI TCCGGA 1 cut(s) 611
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 1019
BspMAI CTGCAG 2 cut(s) 311, 872
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 2 cut(s) 726, 845
BspT107I GGYRCC 1 cut(s) 1017
BsrDI GCAATG 2 cut(s) 529, 838
BsrFI RCCGGY 1 cut(s) 659
BsrGI TGTACA 1 cut(s) 19
BsrI ACTGG 3 cut(s) 182, 469, 968
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 674, 795, 808, 1036
BssMI GATC 4 cut(s) 627, 718, 823, 850
BssT1I CCWWGG 3 cut(s) 674, 795, 1036
Bst2UI CCWGG 4 cut(s) 491, 809, 894, 909
Bst4CI ACNGT 2 cut(s) 510, 606
Bst6I CTCTTC 1 cut(s) 832
BstAUI TGTACA 1 cut(s) 19
BstBAI YACGTR 1 cut(s) 953
BstC8I GCNNGC 2 cut(s) 307, 419
BstDEI CTNAG 2 cut(s) 350, 1004
BstDSI CCRYGG 1 cut(s) 674
BstF5I GGATG 1 cut(s) 919
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 4 cut(s) 630, 721, 826, 853
BstMAI GTCTC 2 cut(s) 171, 267
BstMBI GATC 4 cut(s) 627, 718, 823, 850
BstMWI GCNNNNNNNGC 3 cut(s) 88, 923, 1059
BstNI CCWGG 4 cut(s) 491, 809, 894, 909
BstNSI RCATGY 3 cut(s) 20, 421, 640
BstSCI CCNGG 4 cut(s) 489, 807, 892, 907
BstSFI CTRYAG 2 cut(s) 307, 868
BstSLI GKGCMC 3 cut(s) 877, 1020, 1047
BstSNI TACGTA 1 cut(s) 953
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 4 cut(s) 206, 307, 321, 1127
BstV2I GAAGAC 1 cut(s) 793
BsuRI GGCC 3 cut(s) 443, 561, 1035
BtgI CCRYGG 1 cut(s) 674
BtsCI GGATG 1 cut(s) 919
BtsI GCAGTG 2 cut(s) 743, 877
BtsIMutI CAGTG 2 cut(s) 743, 877
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 2 cut(s) 307, 419
CfoI GCGC 1 cut(s) 214
Cfr10I RCCGGY 1 cut(s) 659
Cfr13I GGNCC 2 cut(s) 609, 896
CsiI ACCWGGT 1 cut(s) 892
Csp6I GTAC 6 cut(s) 20, 86, 98, 545, 954, 1085
CviQI GTAC 6 cut(s) 20, 86, 98, 545, 954, 1085
DdeI CTNAG 2 cut(s) 350, 1004
DpnI GATC 4 cut(s) 629, 720, 825, 852
DpnII GATC 4 cut(s) 627, 718, 823, 850
DraIII CACNNNGTG 1 cut(s) 121
EaeI YGGCCR 1 cut(s) 559
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Eco105I TACGTA 1 cut(s) 953
Eco130I CCWWGG 3 cut(s) 674, 795, 1036
Eco32I GATATC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 609, 896
EcoRII CCWGG 4 cut(s) 489, 807, 892, 907
EcoRV GATATC 1 cut(s) 148
EcoT14I CCWWGG 3 cut(s) 674, 795, 1036
ErhI CCWWGG 3 cut(s) 674, 795, 1036
FalI AAGNNNNNCTT 2 cut(s) 788, 820
FaqI GGGAC 1 cut(s) 392
FauI CCCGC 1 cut(s) 527
FblI GTMKAC 3 cut(s) 618, 768, 1029
Fnu4HI GCNGC 5 cut(s) 210, 220, 296, 310, 1116
FokI GGATG 1 cut(s) 906
Fsp4HI GCNGC 5 cut(s) 210, 220, 296, 310, 1116
FspBI CTAG 2 cut(s) 83, 216
GlaI GCGC 1 cut(s) 213
GluI GCNGC 5 cut(s) 210, 220, 296, 310, 1116
GsuI CTGGAG 2 cut(s) 486, 804
HaeIII GGCC 3 cut(s) 443, 561, 1035
HapII CCGG 3 cut(s) 612, 660, 1080
HhaI GCGC 1 cut(s) 214
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HincII GTYRAC 2 cut(s) 342, 619
HindII GTYRAC 2 cut(s) 342, 619
HinfI GANTC 9 cut(s) 191, 321, 380, 471, 564, 578, 615, 770, 782
HpaII CCGG 3 cut(s) 612, 660, 1080
HphI GGTGA 1 cut(s) 860
Hpy166II GTNNAC 8 cut(s) 342, 538, 619, 655, 769, 781, 875, 1030
Hpy188I TCNGA 1 cut(s) 883
Hpy188III TCNNGA 6 cut(s) 116, 437, 460, 593, 612, 821
Hpy8I GTNNAC 8 cut(s) 342, 538, 619, 655, 769, 781, 875, 1030
Hpy99I CGWCG 2 cut(s) 155, 623
HpyAV CCTTC 2 cut(s) 235, 733
HpyCH4III ACNGT 2 cut(s) 510, 606
HpyCH4IV ACGT 2 cut(s) 621, 952
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 923, 1059
HpyF3I CTNAG 2 cut(s) 350, 1004
HpySE526I ACGT 2 cut(s) 621, 952
HspAI GCGC 1 cut(s) 212
Kpn2I TCCGGA 1 cut(s) 611
Kzo9I GATC 4 cut(s) 627, 718, 823, 850
Lsp1109I GCAGC 4 cut(s) 206, 307, 321, 1127
LweI GCATC 2 cut(s) 121, 372
MabI ACCWGGT 1 cut(s) 892
MaeI CTAG 2 cut(s) 83, 216
MaeII ACGT 2 cut(s) 621, 952
MaeIII GTNAC 3 cut(s) 405, 948, 985
MalI GATC 4 cut(s) 629, 720, 825, 852
MboI GATC 4 cut(s) 627, 718, 823, 850
MboII GAAGA 5 cut(s) 18, 622, 793, 796, 849
MhlI GDGCHC 3 cut(s) 877, 1020, 1047
MluCI AATT 3 cut(s) 93, 531, 1129
MlyI GAGTC 6 cut(s) 374, 465, 572, 624, 764, 776
MnlI CCTC 8 cut(s) 122, 210, 290, 310, 347, 433, 461, 864
MroI TCCGGA 1 cut(s) 611
MseI TTAA 2 cut(s) 504, 530
MslI CAYNNNNRTG 1 cut(s) 831
MspI CCGG 3 cut(s) 612, 660, 1080
MspR9I CCNGG 4 cut(s) 491, 809, 894, 909
MvaI CCWGG 4 cut(s) 491, 809, 894, 909
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 88, 923, 1059
NcoI CCATGG 1 cut(s) 674
NdeII GATC 4 cut(s) 627, 718, 823, 850
NlaIV GGNNCC 1 cut(s) 1019
NmuCI GTSAC 1 cut(s) 405
NspI RCATGY 3 cut(s) 20, 421, 640
PaeI GCATGC 1 cut(s) 421
PciI ACATGT 2 cut(s) 16, 636
PfeI GAWTC 3 cut(s) 191, 321, 564
PfoI TCCNGGA 2 cut(s) 489, 907
PkrI GCNGC 5 cut(s) 211, 221, 297, 311, 1117
PleI GAGTC 6 cut(s) 374, 465, 572, 623, 764, 776
PpsI GAGTC 6 cut(s) 374, 465, 572, 623, 764, 776
Ppu21I YACGTR 1 cut(s) 953
PscI ACATGT 2 cut(s) 16, 636
PsiI TTATAA 1 cut(s) 708
Psp6I CCWGG 4 cut(s) 489, 807, 892, 907
PspGI CCWGG 4 cut(s) 489, 807, 892, 907
PspN4I GGNNCC 1 cut(s) 1019
PspPI GGNCC 2 cut(s) 609, 896
PsrI GAACNNNNNNTAC 2 cut(s) 90, 122
PstI CTGCAG 2 cut(s) 311, 872
RsaI GTAC 6 cut(s) 21, 87, 99, 546, 955, 1086
RsaNI GTAC 6 cut(s) 20, 86, 98, 545, 954, 1085
RseI CAYNNNNRTG 1 cut(s) 831
SalI GTCGAC 1 cut(s) 617
SaqAI TTAA 2 cut(s) 504, 530
SatI GCNGC 5 cut(s) 210, 220, 296, 310, 1116
Sau3AI GATC 4 cut(s) 627, 718, 823, 850
Sau96I GGNCC 2 cut(s) 609, 896
ScaI AGTACT 1 cut(s) 87
SchI GAGTC 6 cut(s) 374, 465, 572, 624, 764, 776
ScrFI CCNGG 4 cut(s) 491, 809, 894, 909
SduI GDGCHC 3 cut(s) 877, 1020, 1047
SexAI ACCWGGT 1 cut(s) 892
SfaNI GCATC 2 cut(s) 121, 372
SfcI CTRYAG 2 cut(s) 307, 868
SinI GGWCC 2 cut(s) 609, 896
SmiMI CAYNNNNRTG 1 cut(s) 831
SmlI CTYRAG 4 cut(s) 168, 230, 591, 855
SmoI CTYRAG 4 cut(s) 168, 230, 591, 855
SnaBI TACGTA 1 cut(s) 953
SphI GCATGC 1 cut(s) 421
Sse9I AATT 3 cut(s) 93, 531, 1129
SsiI CCGC 2 cut(s) 210, 520
SspMI CTAG 2 cut(s) 83, 216
StyD4I CCNGG 4 cut(s) 489, 807, 892, 907
StyI CCWWGG 3 cut(s) 674, 795, 1036
TaaI ACNGT 2 cut(s) 510, 606
TaiI ACGT 2 cut(s) 624, 955
TaqI TCGA 3 cut(s) 150, 618, 688
TaqII GACCGA 1 cut(s) 445
TasI AATT 3 cut(s) 93, 531, 1129
TatI WGTACW 3 cut(s) 19, 85, 97
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 3 cut(s) 191, 321, 564
Tru1I TTAA 2 cut(s) 504, 530
Tru9I TTAA 2 cut(s) 504, 530
TscAI CASTG 2 cut(s) 750, 877
TseFI GTSAC 1 cut(s) 405
TseI GCWGC 4 cut(s) 219, 295, 309, 1115
Tsp45I GTSAC 1 cut(s) 405
TspDTI ATGAA 3 cut(s) 24, 183, 714
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 2 cut(s) 750, 877
VneI GTGCAC 1 cut(s) 873
VpaK11BI GGWCC 2 cut(s) 609, 896
XceI RCATGY 3 cut(s) 20, 421, 640
XmiI GTMKAC 3 cut(s) 618, 768, 1029
XspI CTAG 2 cut(s) 83, 216
ZrmI AGTACT 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.