FvH4_4g25000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001251
Physical Location & Seq
Forward (+)
26931727 .. 26934493
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25000.t1

Sequence Viewer

Length: 981 bp
ATGGAACTGCCGCAGTTTTTCATAGTAGCAGCAACCACTATAGGTTTCATCTCAGTTTGCAAATCTTTGATCAATTTTGTGACATGGGTATGGGTCATGTTCTTGAGACCCTCGAAGAATCTCAAAAAGTATGGATCTTGGGCCATCATCACTGGCTCCACCGATGGCATTGGCAAAGCTCTCGCCTTTGAAATGGCCGCAAAGGGCCTTAACCTCGTCTTGGTGGGTCGAGACCCTTCAAAGCTCGAAGCCACCTCGCATGGAATTCATGAAAAATTTGGCCACCAAGTTGAAATCAAGAACATTCTGATGGACTTGGCCAAGCTGAGTGGGGAGGAGATAGCTGGAGTTATAGAGGAAGGGATCAAAGGGCTTGATGTTGGGGTTTTGGTTAACAATGCAGGGGTCGCTTACCCTTATGCAAAGTATTTTCATGAGGTTGATTTGGAGCTCATGGAGAGCATTACAAAGGTGAACATTGAAGCTGCAACTTGGGTGAGTAGGGCTGTGATTCCAGGTATGCTCAAGAAGAAGAGAGGAGCCATTGTCAACATTGGATCTGGGTCTTCTGTGATAGTTCCTTCTTATCCTCTTTACACTGTTTATGCTGCTTCCAAAGCGTACCTTGCAGTGTTCACAAGGTGCACTAGTTTGGAATACAAGCAGCAGGGAATCGATGTTCAGTGTCAGATTCCTATTTTTGTGGCGACTAAGATGACAAAGTTAAAGGCATCTTCCTTCTTGATTGCATCTCCAGAGATGTATAGCAAAGCTAGCATACGATGCATTGGTTATGAGCATCTATGTACCCCATACTGGGGGCACTCAGTGCAGTGGTTCATTGCACGTGCTTTGCCTGATGCAATATTGAATGCGAGCATTTTTCGGTACTTCCTTGGGATGCGAAAGAGAGGCCAATTGAAGGAGTCTCGGATTAAAAAGATGCAGCAACAAGAAAAGGCATTCGAAACTCGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

327

Amino Acids

36.22

Weight (kDa)

9.42

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 242 2.5e-38 short chain dehydrogenase
adh_short_C2 PF13561 54 - 241 1.2e-23 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 11, 198
AclWI GGATC 3 cut(s) 142, 371, 565
AcoI YGGCCR 3 cut(s) 195, 280, 318
AcsI RAATTY 2 cut(s) 264, 275
AcvI CACGTG 1 cut(s) 848
AdeI CACNNNGTG 2 cut(s) 642, 829
AfaI GTAC 3 cut(s) 623, 808, 890
AfiI CCNNNNNNNGG 5 cut(s) 220, 816, 817, 818, 922
AgsI TTSAA 6 cut(s) 191, 240, 293, 482, 871, 922
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 1 cut(s) 514
AloI GAACNNNNNNTCC 2 cut(s) 663, 695
AluBI AGCT 7 cut(s) 179, 244, 325, 344, 451, 485, 773
AluI AGCT 7 cut(s) 179, 244, 325, 344, 451, 485, 773
Alw21I GWGCWC 2 cut(s) 453, 647
Alw26I GTCTC 3 cut(s) 100, 225, 933
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 3 cut(s) 142, 371, 565
AoxI GGCC 6 cut(s) 141, 195, 205, 280, 318, 913
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 5 cut(s) 29, 485, 608, 664, 946
ApoI RAATTY 2 cut(s) 264, 275
AspS9I GGNCC 2 cut(s) 141, 205
AsuHPI GGTGA 2 cut(s) 484, 508
AsuII TTCGAA 1 cut(s) 966
AsuNHI GCTAGC 1 cut(s) 773
BaeGI GKGCMC 2 cut(s) 647, 825
BalI TGGCCA 2 cut(s) 282, 320
BanII GRGCYC 1 cut(s) 453
BbrPI CACGTG 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 2 cut(s) 453, 647
BbvI GCAGC 5 cut(s) 41, 472, 595, 676, 958
BccI CCATC 3 cut(s) 152, 158, 304
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 100, 225, 933
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 2 cut(s) 648, 774
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 7 cut(s) 11, 30, 198, 486, 609, 665, 947
BlsI GCNGC 7 cut(s) 12, 31, 199, 487, 610, 666, 948
Bme1390I CCNGG 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 141, 205
BmiI GGNNCC 2 cut(s) 157, 541
BmrFI CCNGG 1 cut(s) 516
BmrI ACTGGG 1 cut(s) 826
BmsI GCATC 7 cut(s) 740, 758, 773, 808, 850, 891, 933
BmtI GCTAGC 1 cut(s) 777
BmuI ACTGGG 1 cut(s) 826
BpiI GAAGAC 1 cut(s) 558
BpmI CTGGAG 2 cut(s) 366, 738
Bpu14I TTCGAA 1 cut(s) 966
BpuEI CTTGAG 2 cut(s) 124, 509
Bsa29I ATCGAT 1 cut(s) 675
BsaAI YACGTR 1 cut(s) 848
BsaI GGTCTC 2 cut(s) 100, 225
BsaJI CCNNGG 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 5 cut(s) 220, 816, 817, 818, 922
Bse1I ACTGG 2 cut(s) 157, 821
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 1 cut(s) 516
BseCI ATCGAT 1 cut(s) 675
BseDI CCNNGG 1 cut(s) 895
BseGI GGATG 1 cut(s) 906
BseLI CCNNNNNNNGG 5 cut(s) 220, 816, 817, 818, 922
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 3 cut(s) 66, 317, 840
BseNI ACTGG 2 cut(s) 157, 821
BseRI GAGGAG 2 cut(s) 350, 552
BseSI GKGCMC 2 cut(s) 647, 825
BseXI GCAGC 5 cut(s) 41, 472, 595, 676, 958
BsgI GTGCAG 1 cut(s) 851
BshFI GGCC 6 cut(s) 143, 197, 207, 282, 320, 915
BshVI ATCGAT 1 cut(s) 675
BsiHKAI GWGCWC 2 cut(s) 453, 647
BslI CCNNNNNNNGG 5 cut(s) 220, 816, 817, 818, 922
BsmAI GTCTC 3 cut(s) 100, 225, 933
BsmI GAATGC 2 cut(s) 877, 962
BsnI GGCC 6 cut(s) 143, 197, 207, 282, 320, 915
Bso31I GGTCTC 2 cut(s) 100, 225
Bsp119I TTCGAA 1 cut(s) 966
Bsp1286I GDGCHC 3 cut(s) 453, 647, 825
Bsp143I GATC 4 cut(s) 69, 134, 363, 557
BspACI CCGC 2 cut(s) 11, 198
BspANI GGCC 6 cut(s) 143, 197, 207, 282, 320, 915
BspCNI CTCAG 3 cut(s) 65, 318, 839
BspDI ATCGAT 1 cut(s) 675
BspHI TCATGA 2 cut(s) 268, 433
BspLI GGNNCC 2 cut(s) 157, 541
BspOI GCTAGC 1 cut(s) 777
BspPI GGATC 3 cut(s) 142, 371, 565
BspT104I TTCGAA 1 cut(s) 966
BspTNI GGTCTC 2 cut(s) 100, 225
BsrDI GCAATG 1 cut(s) 840
BsrI ACTGG 2 cut(s) 157, 821
BssECI CCNNGG 1 cut(s) 895
BssMI GATC 4 cut(s) 69, 134, 363, 557
BssT1I CCWWGG 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 601
Bst6I CTCTTC 1 cut(s) 527
BstAPI GCANNNNNTGC 2 cut(s) 783, 829
BstBAI YACGTR 1 cut(s) 848
BstBI TTCGAA 1 cut(s) 966
BstC8I GCNNGC 2 cut(s) 775, 877
BstDEI CTNAG 4 cut(s) 52, 326, 711, 826
BstF5I GGATG 1 cut(s) 906
BstKTI GATC 4 cut(s) 72, 137, 366, 560
BstMAI GTCTC 3 cut(s) 100, 225, 933
BstMBI GATC 4 cut(s) 69, 134, 363, 557
BstMWI GCNNNNNNNGC 6 cut(s) 407, 617, 626, 774, 783, 829
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 647, 825
BstV1I GCAGC 5 cut(s) 41, 472, 595, 676, 958
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 2 cut(s) 134, 557
BstYI RGATCY 2 cut(s) 134, 557
Bsu15I ATCGAT 1 cut(s) 675
BsuRI GGCC 6 cut(s) 143, 197, 207, 282, 320, 915
BsuTUI ATCGAT 1 cut(s) 675
BtsCI GGATG 1 cut(s) 906
BtsI GCAGTG 2 cut(s) 636, 839
BtsIMutI CAGTG 6 cut(s) 150, 597, 636, 689, 834, 839
Cac8I GCNNGC 2 cut(s) 775, 877
CciI TCATGA 2 cut(s) 268, 433
Cfr13I GGNCC 2 cut(s) 141, 205
ClaI ATCGAT 1 cut(s) 675
Csp6I GTAC 3 cut(s) 622, 807, 889
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 6 cut(s) 84, 97, 260, 269, 434, 454
CviQI GTAC 3 cut(s) 622, 807, 889
DdeI CTNAG 4 cut(s) 52, 326, 711, 826
DpnI GATC 4 cut(s) 71, 136, 365, 559
DpnII GATC 4 cut(s) 69, 134, 363, 557
DraIII CACNNNGTG 2 cut(s) 642, 829
EaeI YGGCCR 3 cut(s) 195, 280, 318
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Ecl136II GAGCTC 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 2 cut(s) 100, 225
Eco53kI GAGCTC 1 cut(s) 451
Eco72I CACGTG 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 451
EcoO109I RGGNCCY 1 cut(s) 205
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 788
EcoT38I GRGCYC 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 6 cut(s) 87, 100, 263, 272, 437, 457
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 6 cut(s) 83, 96, 259, 268, 433, 453
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 7 cut(s) 11, 30, 198, 486, 609, 665, 947
FokI GGATG 1 cut(s) 913
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 7 cut(s) 11, 30, 198, 486, 609, 665, 947
FspBI CTAG 2 cut(s) 648, 774
GluI GCNGC 7 cut(s) 11, 30, 198, 486, 609, 665, 947
GsuI CTGGAG 2 cut(s) 366, 738
HaeIII GGCC 6 cut(s) 143, 197, 207, 282, 320, 915
Hin1II CATG 6 cut(s) 87, 100, 263, 272, 437, 457
HincII GTYRAC 2 cut(s) 394, 550
HindII GTYRAC 2 cut(s) 394, 550
HinfI GANTC 5 cut(s) 118, 511, 672, 691, 926
HpaI GTTAAC 1 cut(s) 394
HphI GGTGA 2 cut(s) 484, 508
Hpy166II GTNNAC 5 cut(s) 394, 475, 550, 636, 645
Hpy188I TCNGA 3 cut(s) 309, 690, 933
Hpy188III TCNNGA 8 cut(s) 103, 230, 269, 298, 434, 526, 742, 755
Hpy8I GTNNAC 5 cut(s) 394, 475, 550, 636, 645
HpyAV CCTTC 5 cut(s) 246, 353, 591, 748, 916
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4IV ACGT 1 cut(s) 847
HpyF10VI GCNNNNNNNGC 6 cut(s) 407, 617, 626, 774, 783, 829
HpyF3I CTNAG 4 cut(s) 52, 326, 711, 826
HpySE526I ACGT 1 cut(s) 847
Hsp92II CATG 6 cut(s) 87, 100, 263, 272, 437, 457
Ksp22I TGATCA 1 cut(s) 69
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 69, 134, 363, 557
LmnI GCTCC 3 cut(s) 161, 448, 539
Lsp1109I GCAGC 5 cut(s) 41, 472, 595, 676, 958
LweI GCATC 7 cut(s) 740, 758, 773, 808, 850, 891, 933
MaeI CTAG 2 cut(s) 648, 774
MaeII ACGT 1 cut(s) 847
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 71, 136, 365, 559
MboI GATC 4 cut(s) 69, 134, 363, 557
MboII GAAGA 5 cut(s) 127, 541, 544, 558, 726
MfeI CAATTG 1 cut(s) 917
MflI RGATCY 2 cut(s) 134, 557
MhlI GDGCHC 3 cut(s) 453, 647, 825
MlsI TGGCCA 2 cut(s) 282, 320
MluCI AATT 4 cut(s) 73, 264, 275, 917
MluNI TGGCCA 2 cut(s) 282, 320
MlyI GAGTC 1 cut(s) 935
MnlI CCTC 9 cut(s) 121, 224, 265, 328, 349, 430, 530, 600, 905
Mox20I TGGCCA 2 cut(s) 282, 320
Mph1103I ATGCAT 1 cut(s) 788
MscI TGGCCA 2 cut(s) 282, 320
MseI TTAA 5 cut(s) 210, 393, 725, 936, 979
MslI CAYNNNNRTG 2 cut(s) 88, 308
Msp20I TGGCCA 2 cut(s) 282, 320
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 917
Mva1269I GAATGC 2 cut(s) 877, 962
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 6 cut(s) 407, 617, 626, 774, 783, 829
NdeII GATC 4 cut(s) 69, 134, 363, 557
NheI GCTAGC 1 cut(s) 773
NlaIII CATG 6 cut(s) 87, 100, 263, 272, 437, 457
NlaIV GGNNCC 2 cut(s) 157, 541
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 788
NspV TTCGAA 1 cut(s) 966
PagI TCATGA 2 cut(s) 268, 433
PctI GAATGC 2 cut(s) 877, 962
PfeI GAWTC 4 cut(s) 118, 511, 672, 691
PkrI GCNGC 7 cut(s) 12, 31, 199, 487, 610, 666, 948
PleI GAGTC 1 cut(s) 934
PmaCI CACGTG 1 cut(s) 848
PmlI CACGTG 1 cut(s) 848
PpsI GAGTC 1 cut(s) 934
Ppu21I YACGTR 1 cut(s) 848
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 514
PspCI CACGTG 1 cut(s) 848
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 157, 541
PspPI GGNCC 2 cut(s) 141, 205
PsuI RGATCY 2 cut(s) 134, 557
RsaI GTAC 3 cut(s) 623, 808, 890
RsaNI GTAC 3 cut(s) 622, 807, 889
RseI CAYNNNNRTG 2 cut(s) 88, 308
SacI GAGCTC 1 cut(s) 453
SaqAI TTAA 5 cut(s) 210, 393, 725, 936, 979
SatI GCNGC 7 cut(s) 11, 30, 198, 486, 609, 665, 947
Sau3AI GATC 4 cut(s) 69, 134, 363, 557
Sau96I GGNCC 2 cut(s) 141, 205
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 3 cut(s) 453, 647, 825
SfaNI GCATC 7 cut(s) 740, 758, 773, 808, 850, 891, 933
SfcI CTRYAG 1 cut(s) 39
SfuI TTCGAA 1 cut(s) 966
SmiMI CAYNNNNRTG 2 cut(s) 88, 308
SmlI CTYRAG 2 cut(s) 103, 524
SmoI CTYRAG 2 cut(s) 103, 524
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 4 cut(s) 73, 264, 275, 917
SsiI CCGC 2 cut(s) 11, 198
SspI AATATT 1 cut(s) 867
SspMI CTAG 2 cut(s) 648, 774
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 1 cut(s) 601
TaiI ACGT 1 cut(s) 850
TaqI TCGA 5 cut(s) 113, 229, 246, 675, 966
TasI AATT 4 cut(s) 73, 264, 275, 917
TauI GCSGC 2 cut(s) 13, 200
TfiI GAWTC 4 cut(s) 118, 511, 672, 691
Tru1I TTAA 5 cut(s) 210, 393, 725, 936, 979
Tru9I TTAA 5 cut(s) 210, 393, 725, 936, 979
TscAI CASTG 6 cut(s) 157, 604, 636, 689, 834, 839
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 5 cut(s) 29, 485, 608, 664, 946
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 6 cut(s) 10, 37, 257, 285, 422, 829
TspRI CASTG 6 cut(s) 157, 604, 636, 689, 834, 839
VneI GTGCAC 1 cut(s) 643
XapI RAATTY 2 cut(s) 264, 275
XspI CTAG 2 cut(s) 648, 774
Zsp2I ATGCAT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.