Rorug04G0254700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
42749269 .. 42749634
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0254700.1

Sequence Viewer

Length: 366 bp
ATGGAAAACACCAACTTTAGTTTTCCTAATCATGTCGACTTGTATGATGACGATGGAACACCCACAAATGAGGATGAGCCAATTTCATCAAGGAAGGCACATCCTCAAGGACAGAAAGCTCAGAAGCTAGCTAAGAAAAAAGGCAACAAGCAAGATGCGGATGGCCTACGACTTCAAATGCAGAAATGTTATGAACAAACAGAACGCGAGTACCAACAAAGGCAACAACAGTTCAAGAAAGGTCAACTAATTGAGCAACGCGCTGAGGATGCTCACACGATGATGGTGGATCCATCAATTTTCACCCTAAGAAATAGGAGTTATTGGGAGAGGAAGCAACAAAATATAATTGATAAAGAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

14.32

Weight (kDa)

6.84

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 36
AccII CGCG 2 cut(s) 207, 261
AciI CCGC 1 cut(s) 158
AclWI GGATC 2 cut(s) 284, 297
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 2 cut(s) 176, 235
AluBI AGCT 3 cut(s) 119, 127, 131
AluI AGCT 3 cut(s) 119, 127, 131
AlwI GGATC 2 cut(s) 284, 297
AoxI GGCC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 127
BaeI ACNNNNGTAYC 2 cut(s) 194, 227
BamHI GGATCC 1 cut(s) 289
BbvCI CCTCAGC 1 cut(s) 264
BccI CCATC 4 cut(s) 47, 155, 277, 301
BfaI CTAG 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 2 cut(s) 145, 259
BmtI GCTAGC 1 cut(s) 131
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 1 cut(s) 90
BseGI GGATG 4 cut(s) 79, 100, 166, 274
BseMII CTCAG 2 cut(s) 134, 255
Bsh1236I CGCG 2 cut(s) 207, 261
BshFI GGCC 1 cut(s) 165
BsnI GGCC 1 cut(s) 165
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 133, 256
BspFNI CGCG 2 cut(s) 207, 261
BspLI GGNNCC 1 cut(s) 291
BspOI GCTAGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 284, 297
BssMI GATC 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 4 cut(s) 120, 132, 264, 308
BstF5I GGATG 4 cut(s) 79, 100, 166, 274
BstFNI CGCG 2 cut(s) 207, 261
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 1 cut(s) 292
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstUI CGCG 2 cut(s) 207, 261
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 4 cut(s) 79, 100, 166, 274
Cac8I GCNNGC 1 cut(s) 129
CfoI GCGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 211
CviAII CATG 2 cut(s) 32, 363
CviJI RGCY 5 cut(s) 79, 119, 127, 131, 165
CviKI_1 RGCY 5 cut(s) 79, 119, 127, 131, 165
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 4 cut(s) 120, 132, 264, 308
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
FaeI CATG 2 cut(s) 35, 366
FaiI YATR 5 cut(s) 33, 45, 192, 347, 364
FatI CATG 2 cut(s) 31, 362
FblI GTMKAC 1 cut(s) 36
FokI GGATG 4 cut(s) 86, 87, 173, 281
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 262
HaeIII GGCC 1 cut(s) 165
HhaI GCGC 1 cut(s) 263
Hin1II CATG 2 cut(s) 35, 366
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HincII GTYRAC 2 cut(s) 37, 245
HindII GTYRAC 2 cut(s) 37, 245
HphI GGTGA 1 cut(s) 295
Hpy166II GTNNAC 2 cut(s) 37, 245
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 2 cut(s) 37, 245
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 231
HpyCH4V TGCA 1 cut(s) 181
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 120, 132, 264, 308
Hsp92II CATG 2 cut(s) 35, 366
HspAI GCGC 1 cut(s) 261
Kzo9I GATC 1 cut(s) 289
LweI GCATC 2 cut(s) 145, 259
MaeI CTAG 1 cut(s) 128
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MflI RGATCY 1 cut(s) 289
MluCI AATT 4 cut(s) 81, 249, 297, 348
MnlI CCTC 5 cut(s) 64, 114, 259, 324, 352
MslI CAYNNNNRTG 1 cut(s) 281
MvnI CGCG 2 cut(s) 207, 261
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 289
NheI GCTAGC 1 cut(s) 127
NlaIII CATG 2 cut(s) 35, 366
NlaIV GGNNCC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
RseI CAYNNNNRTG 1 cut(s) 281
SalI GTCGAC 1 cut(s) 35
Sau3AI GATC 1 cut(s) 289
SetI ASST 4 cut(s) 121, 129, 133, 244
SfaNI GCATC 2 cut(s) 145, 259
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 81, 249, 297, 348
SsiI CCGC 1 cut(s) 158
SspMI CTAG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 231
TaqI TCGA 1 cut(s) 36
TasI AATT 4 cut(s) 81, 249, 297, 348
TspDTI ATGAA 2 cut(s) 75, 207
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.