Rorug04G0254600

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001251
Physical Location & Seq
Forward (+)
42745939 .. 42746695
757 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0254600.1

Sequence Viewer

Length: 540 bp
ATGCGGCTCTGCATATATGAGGACTTCCCGCCGGATGAGCATCACCGGTGGATCAGGACAGATGATTTGTCTGTAGAGGATGCTATTGGTTATGTCCGACGTGCCTATTTTCACGCGTCTATGAGAGATCCTGGCACTGGAGGAGTCTATTCTGACATGTACCTTGATCTGTATCAGTGGTACCCAGAGTTGCATACACGTGCTCTCTTTGTGTTGTCGAGTTCGAGATATTGTCACGACTTTTCTGGTCCGAAGATACGGGACATGTTGGGGTCAATAGGAGTTCAGACTGCAAACATCACGTCTCTTGGTGAGGTGCGTGAAGGATGTGTACTGCATTGCTTACATGTCAGTAGAGGTGAAGCTGACTTTGCAGCGATCCATACAGGGATGAGCCAGTGTCCTTTTACTCCCTTATTGTGGTGCATTTTGTTGAAGGGAAGGCCAGTGTATATAGGTTTGGCAGATGCAGATTTGTTGGGGAGGATGCGCAGTGAAGGTCCAAGGCATATTGATTTACGCGCACTGCATTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

179

Amino Acids

20.4

Weight (kDa)

6.18

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 491
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccII CGCG 2 cut(s) 116, 522
AciI CCGC 2 cut(s) 4, 29
AclWI GGATC 3 cut(s) 59, 122, 373
AcvI CACGTG 1 cut(s) 200
AfaI GTAC 3 cut(s) 161, 182, 333
AfiI CCNNNNNNNGG 2 cut(s) 137, 420
AflIII ACRYGT 5 cut(s) 114, 156, 197, 264, 346
AgeI ACCGGT 1 cut(s) 45
AgsI TTSAA 1 cut(s) 436
AjiI CACGTC 2 cut(s) 101, 303
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 59, 122, 373
AoxI GGCC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 374
ArsI GACNNNNNNTTYG 4 cut(s) 49, 81, 287, 319
AsiGI ACCGGT 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 2 cut(s) 492, 524
AspS9I GGNCC 2 cut(s) 248, 500
AsuHPI GGTGA 3 cut(s) 35, 323, 371
AvaII GGWCC 2 cut(s) 248, 500
BanI GGYRCC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 315, 347
BbrPI CACGTG 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 386
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 5, 375
BlsI GCNGC 2 cut(s) 6, 376
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 2 cut(s) 248, 500
BmgBI CACGTC 2 cut(s) 101, 303
BmgT120I GGNCC 2 cut(s) 248, 500
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 4 cut(s) 49, 70, 457, 477
BpmI CTGGAG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 200
BsaBI GATNNNNATC 2 cut(s) 39, 171
BsaJI CCNNGG 1 cut(s) 503
BsaWI WCCGGW 1 cut(s) 45
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 420
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 3 cut(s) 142, 397, 446
Bse3DI GCAATG 1 cut(s) 337
Bse8I GATNNNNATC 2 cut(s) 39, 171
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 503
BseGI GGATG 5 cut(s) 40, 85, 332, 396, 492
BseJI GATNNNNATC 2 cut(s) 39, 171
BseLI CCNNNNNNNGG 2 cut(s) 137, 420
BseMI GCAATG 1 cut(s) 337
BseNI ACTGG 3 cut(s) 142, 397, 446
BseRI GAGGAG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 116, 522
BshFI GGCC 1 cut(s) 445
BshNI GGYRCC 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 32, 46
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 137, 420
BsmAI GTCTC 1 cut(s) 309
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 4 cut(s) 51, 127, 166, 378
BspACI CCGC 2 cut(s) 4, 29
BspANI GGCC 1 cut(s) 445
BspFNI CGCG 2 cut(s) 116, 522
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 3 cut(s) 59, 122, 373
BspT107I GGYRCC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 3 cut(s) 142, 397, 446
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 503
BssMI GATC 4 cut(s) 51, 127, 166, 378
BssT1I CCWWGG 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 132
BstBAI YACGTR 1 cut(s) 200
BstF5I GGATG 5 cut(s) 40, 85, 332, 396, 492
BstFNI CGCG 2 cut(s) 116, 522
BstHHI GCGC 2 cut(s) 492, 524
BstKTI GATC 4 cut(s) 54, 130, 169, 381
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 4 cut(s) 51, 127, 166, 378
BstMWI GCNNNNNNNGC 2 cut(s) 37, 371
BstNI CCWGG 1 cut(s) 132
BstNSI RCATGY 3 cut(s) 160, 268, 350
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 2 cut(s) 116, 522
BstV1I GCAGC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 445
BtrI CACGTC 2 cut(s) 101, 303
BtsCI GGATG 5 cut(s) 40, 85, 332, 396, 492
BtsI GCAGTG 2 cut(s) 499, 524
BtsIMutI CAGTG 6 cut(s) 135, 182, 404, 453, 499, 524
CfoI GCGC 2 cut(s) 492, 524
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 248, 500
CseI GACGC 1 cut(s) 105
Csp6I GTAC 3 cut(s) 160, 181, 332
CspAI ACCGGT 1 cut(s) 45
CviAII CATG 3 cut(s) 157, 265, 347
CviJI RGCY 4 cut(s) 7, 365, 396, 445
CviKI_1 RGCY 4 cut(s) 7, 365, 396, 445
CviQI GTAC 3 cut(s) 160, 181, 332
DpnI GATC 4 cut(s) 53, 129, 168, 380
DpnII GATC 4 cut(s) 51, 127, 166, 378
Eco130I CCWWGG 1 cut(s) 503
Eco47I GGWCC 2 cut(s) 248, 500
Eco72I CACGTG 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 503
ErhI CCWWGG 1 cut(s) 503
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 3 cut(s) 160, 268, 350
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 156, 264, 346
FauI CCCGC 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 5, 375
FokI GGATG 5 cut(s) 47, 92, 339, 403, 499
Fsp4HI GCNGC 2 cut(s) 5, 375
FspI TGCGCA 1 cut(s) 491
GlaI GCGC 2 cut(s) 491, 523
GluI GCNGC 2 cut(s) 5, 375
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 445
HapII CCGG 2 cut(s) 32, 46
HgaI GACGC 1 cut(s) 105
HhaI GCGC 2 cut(s) 492, 524
Hin1II CATG 3 cut(s) 160, 268, 350
Hin6I GCGC 2 cut(s) 490, 522
HinP1I GCGC 2 cut(s) 490, 522
HinfI GANTC 1 cut(s) 144
HpaII CCGG 2 cut(s) 32, 46
HphI GGTGA 3 cut(s) 35, 323, 371
Hpy166II GTNNAC 1 cut(s) 332
Hpy188I TCNGA 4 cut(s) 98, 154, 252, 288
Hpy188III TCNNGA 3 cut(s) 55, 225, 236
Hpy8I GTNNAC 1 cut(s) 332
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 4 cut(s) 317, 430, 435, 491
HpyCH4IV ACGT 3 cut(s) 100, 199, 302
HpyCH4V TGCA 8 cut(s) 12, 193, 293, 337, 374, 426, 470, 529
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 371
HpySE526I ACGT 3 cut(s) 100, 199, 302
Hsp92II CATG 3 cut(s) 160, 268, 350
HspAI GCGC 2 cut(s) 490, 522
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 4 cut(s) 51, 127, 166, 378
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 4 cut(s) 49, 70, 457, 477
MaeII ACGT 3 cut(s) 100, 199, 302
MaeIII GTNAC 1 cut(s) 233
MalI GATC 4 cut(s) 53, 129, 168, 380
MboI GATC 4 cut(s) 51, 127, 166, 378
MboII GAAGA 1 cut(s) 265
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 205
MluI ACGCGT 1 cut(s) 114
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 6 cut(s) 13, 70, 134, 307, 350, 477
MslI CAYNNNNRTG 1 cut(s) 198
MspI CCGG 2 cut(s) 32, 46
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MvnI CGCG 2 cut(s) 116, 522
MwoI GCNNNNNNNGC 2 cut(s) 37, 371
NdeII GATC 4 cut(s) 51, 127, 166, 378
NlaIII CATG 3 cut(s) 160, 268, 350
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 233
NsbI TGCGCA 1 cut(s) 491
NspI RCATGY 3 cut(s) 160, 268, 350
PciI ACATGT 3 cut(s) 156, 264, 346
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 2 cut(s) 6, 376
PleI GAGTC 1 cut(s) 152
PmaCI CACGTG 1 cut(s) 200
PmlI CACGTG 1 cut(s) 200
PpsI GAGTC 1 cut(s) 152
Ppu21I YACGTR 1 cut(s) 200
PscI ACATGT 3 cut(s) 156, 264, 346
Psp6I CCWGG 1 cut(s) 130
PspCI CACGTG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 2 cut(s) 248, 500
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 161, 182, 333
RsaNI GTAC 3 cut(s) 160, 181, 332
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 2 cut(s) 5, 375
Sau3AI GATC 4 cut(s) 51, 127, 166, 378
Sau96I GGNCC 2 cut(s) 248, 500
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 1 cut(s) 205
SetI ASST 9 cut(s) 103, 165, 202, 305, 318, 361, 367, 460, 502
SfaNI GCATC 4 cut(s) 49, 70, 457, 477
SfcI CTRYAG 1 cut(s) 72
SgrAI CRCCGGYG 1 cut(s) 45
SinI GGWCC 2 cut(s) 248, 500
SmiMI CAYNNNNRTG 1 cut(s) 198
SsiI CCGC 2 cut(s) 4, 29
StyD4I CCNGG 1 cut(s) 130
StyI CCWWGG 1 cut(s) 503
TaiI ACGT 3 cut(s) 103, 202, 305
TaqI TCGA 2 cut(s) 218, 224
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 7
TscAI CASTG 6 cut(s) 142, 182, 404, 453, 499, 531
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 233
TspRI CASTG 6 cut(s) 142, 182, 404, 453, 499, 531
VpaK11BI GGWCC 2 cut(s) 248, 500
XceI RCATGY 3 cut(s) 160, 268, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.