Rh4DG315200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001251
Physical Location & Seq
Forward (+)
53801925 .. 53803703
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG315200.1

Sequence Viewer

Length: 867 bp
ATGTTTCTGAGATCCCCCAAGAATCTCAAGGAGTATGGATCTTGGGCAATCATCACTGGCTCCACTGATGGAATTGGCAAAGCCCTTGCCTTTGAACTGGCTTCGAAGGGTCTCAACATCGTCTTGGTTGGTCGAAACCCTTTGAAGCTCGAAGCTACCTCCAATGAAATCCGCGAGAAATACAGTCATAAACAAGTGGAAATTAAGAGCATTGTCGTCGACTTGTCCAAAGCTAGTGGGAAGGAAATAGCTAGGACCATAAAGGAAGGAATCAAAGGTCTTGATGTTGGCATTTTGATTAATAATGCAGGGATGTCTTACCCTTTTGCAAGGTTCTTTCATGAGGTTGATTCGGAGCTGATGGAGAACATGTTAAAGGTGAACATGGAAGCCCCAACTTGGGTGACTAGGGCAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATATCGGCTCTGCTTCCTCCAAGCACCCTTCTCTGCCCCTCTACACACTATATGCTGCTACCAAATTGTACATTAAAATTTTCGCAAGATGCATTAATTTGGAATACAAGCAGCATGGAATTGATATTCAGTGTCAGGTGCCTCATTTCGTGGCGACGAAGATGACAGAGGATTTGAAGAAGTCGGTTCCCTTGGTAGTGGCAACACTGGAGAGATTCACGAAAGCAAGCATTCGATGTATTGGTTATGAGCATCTATGTAATCCCTACTGGTTGCATTCAGTGGAGTGGTCCATAGTACATGCAGCTCCTGATGCATTAGTTAATGCCATCACGTTTTGGATCTGCAGAGGGATCAGAAAGAGCGGCCAAATGAAGGAGTGCGTCACAGTAAAAAGATGCAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

288

Amino Acids

32.15

Weight (kDa)

9.49

Isoelectric Point (pI)

20.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 213 4.1e-42 short chain dehydrogenase
KR PF08659 16 - 141 8.3e-06 KR domain
adh_short_C2 PF13561 22 - 214 8e-23 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 595
AccBSI CCGCTC 1 cut(s) 822
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 172, 822
AclWI GGATC 4 cut(s) 6, 46, 806, 818
AcoI YGGCCR 1 cut(s) 823
AcsI RAATTY 1 cut(s) 534
AfaI GTAC 2 cut(s) 527, 756
AfiI CCNNNNNNNGG 3 cut(s) 399, 400, 832
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 3 cut(s) 95, 145, 634
AjnI CCWGG 1 cut(s) 421
AluBI AGCT 6 cut(s) 148, 155, 233, 251, 358, 764
AluI AGCT 6 cut(s) 148, 155, 233, 251, 358, 764
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 4 cut(s) 6, 46, 806, 818
AlwNI CAGNNNCTG 1 cut(s) 767
AoxI GGCC 1 cut(s) 823
ApeKI GCWGC 3 cut(s) 512, 568, 761
ApoI RAATTY 1 cut(s) 534
ArsI GACNNNNNNTTYG 2 cut(s) 613, 645
AseI ATTAAT 2 cut(s) 300, 552
AspS9I GGNCC 2 cut(s) 255, 747
AsuHPI GGTGA 2 cut(s) 391, 415
AsuII TTCGAA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 255, 747
BanI GGYRCC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 499, 580, 773
BccI CCATC 3 cut(s) 62, 355, 794
BcgI CGANNNNNNTGC 2 cut(s) 199, 233
BciT130I CCWGG 1 cut(s) 423
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 3 cut(s) 234, 252, 408
BfmI CTRYAG 1 cut(s) 802
BisI GCNGC 4 cut(s) 513, 569, 762, 823
BlsI GCNGC 4 cut(s) 514, 570, 763, 824
Bme1390I CCNGG 1 cut(s) 423
Bme18I GGWCC 2 cut(s) 255, 747
BmgT120I GGNCC 2 cut(s) 255, 747
BmiI GGNNCC 3 cut(s) 61, 597, 645
BmrFI CCNGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 536, 718, 760, 845
BpmI CTGGAG 1 cut(s) 686
Bpu14I TTCGAA 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 11, 416
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 648
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 438, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 399, 400, 832
Bse1I ACTGG 4 cut(s) 61, 102, 669, 731
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 1 cut(s) 648
BseGI GGATG 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 399, 400, 832
BseNI ACTGG 4 cut(s) 61, 102, 669, 731
BseXI GCAGC 3 cut(s) 499, 580, 773
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 825
BshNI GGYRCC 1 cut(s) 595
BslI CCNNNNNNNGG 3 cut(s) 399, 400, 832
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 3 cut(s) 432, 687, 733
BsnI GGCC 1 cut(s) 825
Bso31I GGTCTC 1 cut(s) 116
Bsp119I TTCGAA 1 cut(s) 104
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 4 cut(s) 11, 38, 798, 810
BspACI CCGC 2 cut(s) 172, 822
BspANI GGCC 1 cut(s) 825
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 61, 597, 645
BspMAI CTGCAG 1 cut(s) 806
BspPI GGATC 4 cut(s) 6, 46, 806, 818
BspT104I TTCGAA 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 822
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 4 cut(s) 61, 102, 669, 731
BssECI CCNNGG 1 cut(s) 648
BssMI GATC 4 cut(s) 11, 38, 798, 810
BssT1I CCWWGG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 185, 847
BstAUI TGTACA 1 cut(s) 525
BstBI TTCGAA 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 685
BstDEI CTNAG 1 cut(s) 8
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 4 cut(s) 14, 41, 801, 813
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 4 cut(s) 11, 38, 798, 810
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNI CCWGG 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 373, 761
BstSCI CCNGG 1 cut(s) 421
BstSFI CTRYAG 1 cut(s) 802
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 499, 580, 773
BstX2I RGATCY 3 cut(s) 11, 38, 798
BstYI RGATCY 3 cut(s) 11, 38, 798
BsuRI GGCC 1 cut(s) 825
BtsCI GGATG 1 cut(s) 318
BtsI GCAGTG 1 cut(s) 420
BtsIMutI CAGTG 6 cut(s) 54, 63, 420, 593, 662, 744
Cac8I GCNNGC 1 cut(s) 685
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 255, 747
CseI GACGC 1 cut(s) 829
Csp6I GTAC 2 cut(s) 526, 755
CspCI CAANNNNNGTGG 2 cut(s) 217, 252
CviAII CATG 5 cut(s) 341, 370, 385, 572, 758
CviQI GTAC 2 cut(s) 526, 755
DdeI CTNAG 1 cut(s) 8
DpnI GATC 4 cut(s) 13, 40, 800, 812
DpnII GATC 4 cut(s) 11, 38, 798, 810
EaeI YGGCCR 1 cut(s) 823
Eco130I CCWWGG 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 255, 747
EcoRII CCWGG 1 cut(s) 421
EcoT14I CCWWGG 1 cut(s) 648
EcoT22I ATGCAT 2 cut(s) 551, 775
ErhI CCWWGG 1 cut(s) 648
FaeI CATG 5 cut(s) 344, 373, 388, 575, 761
FatI CATG 5 cut(s) 340, 369, 384, 571, 757
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 4 cut(s) 513, 569, 762, 823
FokI GGATG 1 cut(s) 325
Fsp4HI GCNGC 4 cut(s) 513, 569, 762, 823
FspBI CTAG 3 cut(s) 234, 252, 408
GluI GCNGC 4 cut(s) 513, 569, 762, 823
GsuI CTGGAG 1 cut(s) 686
HaeIII GGCC 1 cut(s) 825
HgaI GACGC 1 cut(s) 829
Hin1II CATG 5 cut(s) 344, 373, 388, 575, 761
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 4 cut(s) 22, 270, 350, 672
HphI GGTGA 2 cut(s) 391, 415
Hpy166II GTNNAC 2 cut(s) 220, 382
Hpy188I TCNGA 3 cut(s) 9, 355, 815
Hpy188III TCNNGA 5 cut(s) 281, 341, 433, 676, 767
Hpy8I GTNNAC 2 cut(s) 220, 382
Hpy99I CGWCG 2 cut(s) 221, 616
HpyAV CCTTC 5 cut(s) 100, 235, 260, 495, 826
HpyCH4III ACNGT 2 cut(s) 185, 847
HpyCH4IV ACGT 1 cut(s) 791
HpyCH4V TGCA 8 cut(s) 308, 329, 549, 733, 761, 773, 804, 858
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 791
Hsp92II CATG 5 cut(s) 344, 373, 388, 575, 761
Kzo9I GATC 4 cut(s) 11, 38, 798, 810
LmnI GCTCC 4 cut(s) 65, 355, 446, 769
LpnPI CCDG 9 cut(s) 42, 83, 294, 408, 435, 578, 650, 712, 780
Lsp1109I GCAGC 3 cut(s) 499, 580, 773
LweI GCATC 4 cut(s) 536, 718, 760, 845
MaeI CTAG 3 cut(s) 234, 252, 408
MaeII ACGT 1 cut(s) 791
MaeIII GTNAC 2 cut(s) 403, 841
MalI GATC 4 cut(s) 13, 40, 800, 812
MbiI CCGCTC 1 cut(s) 822
MboI GATC 4 cut(s) 11, 38, 798, 810
MboII GAAGA 4 cut(s) 448, 451, 628, 646
MfeI CAATTG 1 cut(s) 450
MflI RGATCY 3 cut(s) 11, 38, 798
MluCI AATT 8 cut(s) 72, 201, 450, 521, 534, 553, 576, 862
MnlI CCTC 7 cut(s) 169, 337, 484, 506, 609, 619, 800
Mph1103I ATGCAT 2 cut(s) 551, 775
MseI TTAA 7 cut(s) 204, 300, 374, 531, 552, 780, 865
MspR9I CCNGG 1 cut(s) 423
MunI CAATTG 1 cut(s) 450
Mva1269I GAATGC 3 cut(s) 432, 687, 733
MvaI CCWGG 1 cut(s) 423
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 770
NdeII GATC 4 cut(s) 11, 38, 798, 810
NlaIII CATG 5 cut(s) 344, 373, 388, 575, 761
NlaIV GGNNCC 3 cut(s) 61, 597, 645
NmuCI GTSAC 2 cut(s) 403, 841
NsiI ATGCAT 2 cut(s) 551, 775
NspI RCATGY 2 cut(s) 373, 761
NspV TTCGAA 1 cut(s) 104
PagI TCATGA 1 cut(s) 340
PciI ACATGT 1 cut(s) 369
PctI GAATGC 3 cut(s) 432, 687, 733
PfeI GAWTC 4 cut(s) 22, 270, 350, 672
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 4 cut(s) 514, 570, 763, 824
PscI ACATGT 1 cut(s) 369
PshBI ATTAAT 2 cut(s) 300, 552
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 3 cut(s) 61, 597, 645
PspPI GGNCC 2 cut(s) 255, 747
PstI CTGCAG 1 cut(s) 806
PstNI CAGNNNCTG 1 cut(s) 767
PsuI RGATCY 3 cut(s) 11, 38, 798
RsaI GTAC 2 cut(s) 527, 756
RsaNI GTAC 2 cut(s) 526, 755
SalI GTCGAC 1 cut(s) 218
SaqAI TTAA 7 cut(s) 204, 300, 374, 531, 552, 780, 865
SatI GCNGC 4 cut(s) 513, 569, 762, 823
Sau3AI GATC 4 cut(s) 11, 38, 798, 810
Sau96I GGNCC 2 cut(s) 255, 747
ScrFI CCNGG 1 cut(s) 423
SfaNI GCATC 4 cut(s) 536, 718, 760, 845
SfcI CTRYAG 1 cut(s) 802
SfuI TTCGAA 1 cut(s) 104
SinI GGWCC 2 cut(s) 255, 747
SmlI CTYRAG 2 cut(s) 26, 431
SmoI CTYRAG 2 cut(s) 26, 431
Sse9I AATT 8 cut(s) 72, 201, 450, 521, 534, 553, 576, 862
SsiI CCGC 2 cut(s) 172, 822
SspMI CTAG 3 cut(s) 234, 252, 408
StyD4I CCNGG 1 cut(s) 421
StyI CCWWGG 1 cut(s) 648
TaaI ACNGT 2 cut(s) 185, 847
TaiI ACGT 1 cut(s) 794
TaqI TCGA 5 cut(s) 104, 133, 150, 219, 691
TasI AATT 8 cut(s) 72, 201, 450, 521, 534, 553, 576, 862
TatI WGTACW 2 cut(s) 525, 754
TauI GCSGC 1 cut(s) 825
TfiI GAWTC 4 cut(s) 22, 270, 350, 672
Tru1I TTAA 7 cut(s) 204, 300, 374, 531, 552, 780, 865
Tru9I TTAA 7 cut(s) 204, 300, 374, 531, 552, 780, 865
TscAI CASTG 6 cut(s) 61, 70, 420, 593, 669, 744
TseFI GTSAC 2 cut(s) 403, 841
TseI GCWGC 3 cut(s) 512, 568, 761
Tsp45I GTSAC 2 cut(s) 403, 841
TspDTI ATGAA 3 cut(s) 180, 329, 845
TspRI CASTG 6 cut(s) 61, 70, 420, 593, 669, 744
VpaK11BI GGWCC 2 cut(s) 255, 747
VspI ATTAAT 2 cut(s) 300, 552
XapI RAATTY 1 cut(s) 534
XceI RCATGY 2 cut(s) 373, 761
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 3 cut(s) 234, 252, 408
Zsp2I ATGCAT 2 cut(s) 551, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.