RchiOBHm_Chr4g0432091

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001251
Physical Location & Seq
Forward (+)
56216512 .. 56220288
3777 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40073

Sequence Viewer

Length: 981 bp
ATGGCAATGGAATTGCAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCACTGTTTGTAAAGCTTTCATCAGCTTTGTGAGATGGGTATGGGTCATGTTTCTGAGATCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACCGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCGAAGGGTCTAAACCTTGTCCTGATTTATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATACATGAAGAATTTGGTGGAAGAGTCGAGATTAAGAACATGGTGATCGACTTGGCCAAATTGAGCGGCGAGAAAATAGCTAATGCCATAGAGGAAGGGATAAGAGGACTAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGGTTACCCTTATGCCAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATTATTAAGGTGAACTTGGGAGCAGTAACTTGGGTGACTAGAGTAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTCTCAATATTAGTTCCAATTCAACTCAGCTCCCTTCTTTTCCTCTATATACTCTTTATTCTACAACCAAGCGTGAGTACATTTCCATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCAGGGAATTGACATTCAGTGTCAGATTCCTTTTTTCGTGGCAACGAGTTTGACAAAACATTTGAGGGGACTTTCCTGGTTTATGGCATCACCAGAGAAATTTAGCAAAGCAAGCGTTCGCTGGATTGGTTATGAGCCTGTGTGTAACCCCTACTGGTGGCACTCTGTGCAGTGGTTCATATTACGTGTGGCCTCACCGGATGTGTTATTGAATGCCATCATTTACTGGATCTGCATTCGGGTCAGAAAGAGAGGCCAAATGAAGGAGGCACAGAGCAAGAAGATGCATCAACAGGAAAATGCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

326

Amino Acids

36.89

Weight (kDa)

9.32

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 245 4.7e-36 short chain dehydrogenase
adh_short_C2 PF13561 54 - 248 5e-21 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 1 cut(s) 336
AclWI GGATC 2 cut(s) 108, 908
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 2 cut(s) 281, 770
AdeI CACNNNGTG 1 cut(s) 838
AfaI GTAC 1 cut(s) 629
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 828, 934
AflIII ACRYGT 1 cut(s) 856
AgsI TTSAA 2 cut(s) 573, 883
AjnI CCWGG 3 cut(s) 428, 520, 746
AluBI AGCT 5 cut(s) 71, 81, 257, 350, 580
AluI AGCT 5 cut(s) 71, 81, 257, 350, 580
AlwI GGATC 2 cut(s) 108, 908
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 3 cut(s) 324, 861, 925
ApeKI GCWGC 2 cut(s) 35, 670
ApoI RAATTY 2 cut(s) 281, 770
ArsI GACNNNNNNTTYG 2 cut(s) 715, 747
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 6 cut(s) 148, 325, 490, 514, 753, 858
AsuII TTCGAA 1 cut(s) 206
BalI TGGCCA 1 cut(s) 326
BbvI GCAGC 2 cut(s) 47, 682
BccI CCATC 2 cut(s) 84, 896
BciT130I CCWGG 3 cut(s) 430, 522, 748
BfaI CTAG 2 cut(s) 380, 507
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 3 cut(s) 36, 337, 671
BlsI GCNGC 3 cut(s) 37, 338, 672
Bme1390I CCNGG 3 cut(s) 430, 522, 748
BmrFI CCNGG 3 cut(s) 430, 522, 748
BmsI GCATC 4 cut(s) 638, 767, 945, 967
BplI GAGNNNNNCTC 2 cut(s) 537, 569
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 4 cut(s) 113, 153, 515, 628
BsaAI YACGTR 1 cut(s) 857
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 868
Bsc4I CCNNNNNNNGG 2 cut(s) 828, 934
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 830, 902
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 430, 522, 748
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 2 cut(s) 828, 934
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 101, 590
BseNI ACTGG 2 cut(s) 830, 902
BseXI GCAGC 2 cut(s) 47, 682
BsgI GTGCAG 1 cut(s) 860
BshFI GGCC 3 cut(s) 326, 863, 927
BsiSI CCGG 2 cut(s) 159, 869
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 2 cut(s) 828, 934
BsmFI GGGAC 1 cut(s) 753
BsmI GAATGC 3 cut(s) 531, 889, 906
BsnI GGCC 3 cut(s) 326, 863, 927
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 113, 315, 900
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 326, 863, 927
BspCNI CTCAG 2 cut(s) 102, 589
BspHI TCATGA 1 cut(s) 439
BspPI GGATC 2 cut(s) 108, 908
BspT104I TTCGAA 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 830, 902
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 113, 315, 900
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 430, 522, 748
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 838
BstBAI YACGTR 1 cut(s) 857
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 189, 784
BstDEI CTNAG 2 cut(s) 110, 576
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 1 cut(s) 877
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 116, 318, 903
BstMBI GATC 3 cut(s) 113, 315, 900
BstMWI GCNNNNNNNGC 3 cut(s) 254, 783, 838
BstNI CCWGG 3 cut(s) 430, 522, 748
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 3 cut(s) 428, 520, 746
BstV1I GCAGC 2 cut(s) 47, 682
BstX2I RGATCY 2 cut(s) 113, 900
BstYI RGATCY 2 cut(s) 113, 900
BsuRI GGCC 3 cut(s) 326, 863, 927
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 1 cut(s) 848
BtsIMutI CAGTG 3 cut(s) 57, 695, 848
Cac8I GCNNGC 2 cut(s) 189, 784
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 158
Csp6I GTAC 1 cut(s) 628
CviAII CATG 6 cut(s) 103, 275, 310, 440, 460, 637
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 2 cut(s) 110, 576
DpnI GATC 3 cut(s) 115, 317, 902
DpnII GATC 3 cut(s) 113, 315, 900
DraIII CACNNNGTG 1 cut(s) 838
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 192
Eco47III AGCGCT 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 428, 520, 746
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 3 cut(s) 653, 960, 976
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 106, 278, 313, 443, 463, 640
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 753
FatI CATG 6 cut(s) 102, 274, 309, 439, 459, 636
Fnu4HI GCNGC 3 cut(s) 36, 337, 671
FokI GGATG 1 cut(s) 884
Fsp4HI GCNGC 3 cut(s) 36, 337, 671
FspBI CTAG 2 cut(s) 380, 507
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 36, 337, 671
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 3 cut(s) 326, 863, 927
HapII CCGG 2 cut(s) 159, 869
HhaI GCGC 1 cut(s) 250
Hin1II CATG 6 cut(s) 106, 278, 313, 443, 463, 640
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 124, 294, 697
HpaII CCGG 2 cut(s) 159, 869
HphI GGTGA 6 cut(s) 148, 325, 490, 514, 753, 858
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 3 cut(s) 111, 696, 917
Hpy188III TCNNGA 5 cut(s) 226, 298, 440, 532, 645
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 5 cut(s) 14, 202, 359, 594, 928
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 856
HpyCH4V TGCA 8 cut(s) 16, 45, 407, 651, 841, 906, 958, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 783, 838
HpyF3I CTNAG 2 cut(s) 110, 576
HpySE526I ACGT 1 cut(s) 856
Hsp92II CATG 6 cut(s) 106, 278, 313, 443, 463, 640
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 113, 315, 900
LmnI GCTCC 3 cut(s) 488, 545, 585
Lsp1109I GCAGC 2 cut(s) 47, 682
LweI GCATC 4 cut(s) 638, 767, 945, 967
MaeI CTAG 2 cut(s) 380, 507
MaeII ACGT 1 cut(s) 856
MaeIII GTNAC 5 cut(s) 154, 416, 493, 502, 815
MalI GATC 3 cut(s) 115, 317, 902
MbiI CCGCTC 1 cut(s) 336
MboI GATC 3 cut(s) 113, 315, 900
MboII GAAGA 5 cut(s) 290, 303, 547, 550, 964
MflI RGATCY 2 cut(s) 113, 900
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 8 cut(s) 11, 174, 281, 329, 549, 568, 678, 770
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 303
MnlI CCTC 9 cut(s) 271, 355, 368, 436, 603, 729, 874, 917, 931
Mox20I TGGCCA 1 cut(s) 326
Mph1103I ATGCAT 3 cut(s) 653, 960, 976
MscI TGGCCA 1 cut(s) 326
MseI TTAA 3 cut(s) 303, 399, 474
MslI CAYNNNNRTG 1 cut(s) 635
Msp20I TGGCCA 1 cut(s) 326
MspI CCGG 2 cut(s) 159, 869
MspR9I CCNGG 3 cut(s) 430, 522, 748
Mva1269I GAATGC 3 cut(s) 531, 889, 906
MvaI CCWGG 3 cut(s) 430, 522, 748
MwoI GCNNNNNNNGC 3 cut(s) 254, 783, 838
NdeII GATC 3 cut(s) 113, 315, 900
NlaIII CATG 6 cut(s) 106, 278, 313, 443, 463, 640
NmuCI GTSAC 2 cut(s) 154, 502
NsiI ATGCAT 3 cut(s) 653, 960, 976
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 439
PctI GAATGC 3 cut(s) 531, 889, 906
PfeI GAWTC 2 cut(s) 124, 697
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 37, 338, 672
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 857
PsiI TTATAA 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 428, 520, 746
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 428, 520, 746
PsuI RGATCY 2 cut(s) 113, 900
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 635
SaqAI TTAA 3 cut(s) 303, 399, 474
SatI GCNGC 3 cut(s) 36, 337, 671
Sau3AI GATC 3 cut(s) 113, 315, 900
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 3 cut(s) 430, 522, 748
SfaNI GCATC 4 cut(s) 638, 767, 945, 967
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 4 cut(s) 128, 168, 530, 643
SmoI CTYRAG 4 cut(s) 128, 168, 530, 643
Sse9I AATT 8 cut(s) 11, 174, 281, 329, 549, 568, 678, 770
SsiI CCGC 1 cut(s) 336
SspI AATATT 2 cut(s) 469, 559
SspMI CTAG 2 cut(s) 380, 507
StyD4I CCNGG 3 cut(s) 428, 520, 746
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 859
TaqI TCGA 4 cut(s) 206, 252, 297, 318
TasI AATT 8 cut(s) 11, 174, 281, 329, 549, 568, 678, 770
TatI WGTACW 1 cut(s) 627
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 2 cut(s) 124, 697
Tru1I TTAA 3 cut(s) 303, 399, 474
Tru9I TTAA 3 cut(s) 303, 399, 474
TscAI CASTG 3 cut(s) 64, 695, 848
TseFI GTSAC 2 cut(s) 154, 502
TseI GCWGC 2 cut(s) 35, 670
Tsp45I GTSAC 2 cut(s) 154, 502
TspDTI ATGAA 8 cut(s) 16, 43, 64, 282, 291, 428, 838, 947
TspRI CASTG 3 cut(s) 64, 695, 848
XapI RAATTY 2 cut(s) 281, 770
XspI CTAG 2 cut(s) 380, 507
Zsp2I ATGCAT 3 cut(s) 653, 960, 976
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.