FvH4_4g25040

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001251
Physical Location & Seq
Forward (+)
26965119 .. 26966688
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25040.t1

Sequence Viewer

Length: 936 bp
ATGGAGCTACATGAATTTTTCATAGTGGTAGCAATCGCCATAGGGTTGGTATCTGTTTGTAAATCTTTAATCAATTGTGTGAGATGGGTATGGGTCATGTTTCTGAGACCTCCAAGGGATCTCAAGGAGTATGGATCATGGGCGATCATCACTGGCTCCACTGATGGAATCGGCAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGTCTTAACCTTGTCTTGGTTGGCCGAAACCCTTCCAAGCTCGAAGCTACCTCCAAAGGAATCCGCGAGAACTGTCATGAACCAGTGAAAGTTAAGAGCATTGTCATCGACTTGGCGAAAGTGAGTGGTGAGCAGATAGCTAAAACTATAGAGGAAGGCATCAAAGGGCTTGATGTTGGCATTTTGGTTAACAATGCAGGGGTGACTTATCCTTATGCAAGGTTCTTTCATGAGGTAGATCTGGAGCTGATGGAGAGCATTACAAAGGTTAACATGGAAGCACCAACTTGGGTGACTAGGGCAGTGCTTCCTGGTATGCTCAAGAAGAAGAAGGGAGCAATCATCAATATCGGCTCTGATTTATCCGAGGACCCTTCTTTGCCTCTATATACACTTTATGCGGCTTCTAAATCGTACCTGAAAATTTTCTCAAGATGCATTAGTTTGGAATATAAGGAGCATGGAATTGACATTCAGTGTCAGGCACCTCGTTTTGTGGCTACAGAGATGACTAGCCATTTGAAGTCACTTCCCTTGTTGATTGCATCACTAGAGAAATTCAGCAAAGCCAGCATCCGATGGATTGGCTATGACCATCTATGTAATCCTTACTGGTCGCATTCAGTGCAGGGGTTCATGATACATGCCTGTCCTGATGCGTTGGTCAATGCCCTCACCTTTTGGATGTGTAGTACTTTGAGAAACAGAGGCCAAATGAAGGAGACACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

312

Amino Acids

34.7

Weight (kDa)

8.68

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 242 8.5e-41 short chain dehydrogenase
adh_short_C2 PF13561 54 - 253 1.5e-23 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccII CGCG 1 cut(s) 270
AciI CCGC 2 cut(s) 268, 605
AclWI GGATC 2 cut(s) 126, 142
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 3 cut(s) 14, 627, 761
AfaI GTAC 2 cut(s) 620, 898
AfiI CCNNNNNNNGG 2 cut(s) 220, 922
AgsI TTSAA 3 cut(s) 191, 201, 727
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 5 cut(s) 7, 244, 251, 344, 451
AluI AGCT 5 cut(s) 7, 244, 251, 344, 451
Alw26I GTCTC 2 cut(s) 100, 920
AlwI GGATC 2 cut(s) 126, 142
AoxI GGCC 2 cut(s) 226, 913
ApoI RAATTY 3 cut(s) 14, 627, 761
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
Asp700I GAANNNNTTC 2 cut(s) 235, 629
AspS9I GGNCC 1 cut(s) 574
AsuHPI GGTGA 4 cut(s) 344, 418, 508, 871
AvaII GGWCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 688
BccI CCATC 5 cut(s) 78, 158, 448, 777, 807
BcgI CGANNNNNNTGC 2 cut(s) 292, 326
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 100, 920
BfaI CTAG 3 cut(s) 501, 717, 755
BfmI CTRYAG 2 cut(s) 351, 705
BglII AGATCT 1 cut(s) 442
BisI GCNGC 1 cut(s) 606
BlsI GCNGC 1 cut(s) 607
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 1 cut(s) 516
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 3 cut(s) 157, 576, 690
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 5 cut(s) 372, 629, 758, 786, 850
BpmI CTGGAG 1 cut(s) 467
BpuEI CTTGAG 3 cut(s) 107, 509, 619
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 113, 570
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 922
Bse1I ACTGG 3 cut(s) 157, 287, 821
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 113, 570
BseGI GGATG 2 cut(s) 777, 894
BseLI CCNNNNNNNGG 2 cut(s) 220, 922
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 3 cut(s) 157, 287, 821
BsgI GTGCAG 1 cut(s) 851
Bsh1236I CGCG 1 cut(s) 270
BshFI GGCC 2 cut(s) 228, 915
BshNI GGYRCC 1 cut(s) 688
BslI CCNNNNNNNGG 2 cut(s) 220, 922
BsmAI GTCTC 2 cut(s) 100, 920
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 2 cut(s) 228, 915
Bso31I GGTCTC 1 cut(s) 100
Bsp143I GATC 4 cut(s) 118, 134, 144, 442
BspACI CCGC 2 cut(s) 268, 605
BspANI GGCC 2 cut(s) 228, 915
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 270
BspHI TCATGA 3 cut(s) 280, 433, 840
BspLI GGNNCC 3 cut(s) 157, 576, 690
BspPI GGATC 2 cut(s) 126, 142
BspT107I GGYRCC 1 cut(s) 688
BspTNI GGTCTC 1 cut(s) 100
BsrI ACTGG 3 cut(s) 157, 287, 821
BssECI CCNNGG 2 cut(s) 113, 570
BssMI GATC 4 cut(s) 118, 134, 144, 442
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 829
BstC8I GCNNGC 1 cut(s) 775
BstDEI CTNAG 1 cut(s) 104
BstF5I GGATG 2 cut(s) 777, 894
BstFNI CGCG 1 cut(s) 270
BstKTI GATC 4 cut(s) 121, 137, 147, 445
BstMAI GTCTC 2 cut(s) 100, 920
BstMBI GATC 4 cut(s) 118, 134, 144, 442
BstMWI GCNNNNNNNGC 2 cut(s) 774, 829
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 851
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 351, 705
BstUI CGCG 1 cut(s) 270
BstX2I RGATCY 2 cut(s) 118, 442
BstXI CCANNNNNNTGG 1 cut(s) 46
BstYI RGATCY 2 cut(s) 118, 442
BsuRI GGCC 2 cut(s) 228, 915
BtsCI GGATG 2 cut(s) 777, 894
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 6 cut(s) 150, 159, 294, 513, 686, 834
Cac8I GCNNGC 1 cut(s) 775
CciI TCATGA 3 cut(s) 280, 433, 840
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 2 cut(s) 619, 897
CviAII CATG 9 cut(s) 11, 97, 138, 281, 434, 478, 665, 841, 848
CviQI GTAC 2 cut(s) 619, 897
DdeI CTNAG 1 cut(s) 104
DpnI GATC 4 cut(s) 120, 136, 146, 444
DpnII GATC 4 cut(s) 118, 134, 144, 442
EaeI YGGCCR 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 574
EcoO109I RGGNCCY 1 cut(s) 574
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 113
EcoT22I ATGCAT 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 113
FaeI CATG 9 cut(s) 14, 100, 141, 284, 437, 481, 668, 844, 851
FatI CATG 9 cut(s) 10, 96, 137, 280, 433, 477, 664, 840, 847
Fnu4HI GCNGC 1 cut(s) 606
FokI GGATG 2 cut(s) 764, 901
Fsp4HI GCNGC 1 cut(s) 606
FspBI CTAG 3 cut(s) 501, 717, 755
GluI GCNGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 467
HaeIII GGCC 2 cut(s) 228, 915
Hin1II CATG 9 cut(s) 14, 100, 141, 284, 437, 481, 668, 844, 851
HincII GTYRAC 2 cut(s) 394, 475
HindII GTYRAC 2 cut(s) 394, 475
HinfI GANTC 2 cut(s) 168, 264
HpaI GTTAAC 2 cut(s) 394, 475
HphI GGTGA 4 cut(s) 344, 418, 508, 871
Hpy166II GTNNAC 2 cut(s) 394, 475
Hpy188I TCNGA 4 cut(s) 105, 562, 571, 782
Hpy188III TCNNGA 7 cut(s) 281, 434, 446, 526, 636, 841, 857
Hpy8I GTNNAC 2 cut(s) 394, 475
HpyAV CCTTC 5 cut(s) 246, 353, 529, 588, 916
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 5 cut(s) 401, 422, 642, 749, 832
HpyF10VI GCNNNNNNNGC 2 cut(s) 774, 829
HpyF3I CTNAG 1 cut(s) 104
Hsp92II CATG 9 cut(s) 14, 100, 141, 284, 437, 481, 668, 844, 851
KspAI GTTAAC 2 cut(s) 394, 475
Kzo9I GATC 4 cut(s) 118, 134, 144, 442
LmnI GCTCC 5 cut(s) 4, 161, 448, 539, 661
LweI GCATC 5 cut(s) 372, 629, 758, 786, 850
MaeI CTAG 3 cut(s) 501, 717, 755
MaeIII GTNAC 3 cut(s) 406, 496, 729
MalI GATC 4 cut(s) 120, 136, 146, 444
MboI GATC 4 cut(s) 118, 134, 144, 442
MboII GAAGA 2 cut(s) 541, 544
MfeI CAATTG 1 cut(s) 73
MflI RGATCY 2 cut(s) 118, 442
MluCI AATT 5 cut(s) 14, 73, 627, 669, 761
MnlI CCTC 9 cut(s) 120, 265, 349, 430, 565, 597, 702, 887, 905
Mph1103I ATGCAT 1 cut(s) 644
MroXI GAANNNNTTC 2 cut(s) 235, 629
MseI TTAA 5 cut(s) 68, 210, 297, 393, 474
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 73
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 774, 829
NdeII GATC 4 cut(s) 118, 134, 144, 442
NlaIII CATG 9 cut(s) 14, 100, 141, 284, 437, 481, 668, 844, 851
NlaIV GGNNCC 3 cut(s) 157, 576, 690
NmuCI GTSAC 3 cut(s) 406, 496, 729
NsiI ATGCAT 1 cut(s) 644
NspI RCATGY 1 cut(s) 851
PagI TCATGA 3 cut(s) 280, 433, 840
PctI GAATGC 1 cut(s) 823
PdmI GAANNNNTTC 2 cut(s) 235, 629
PfeI GAWTC 2 cut(s) 168, 264
PkrI GCNGC 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 574
Psp5II RGGWCCY 1 cut(s) 574
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 3 cut(s) 157, 576, 690
PspPI GGNCC 1 cut(s) 574
PspPPI RGGWCCY 1 cut(s) 574
PsuI RGATCY 2 cut(s) 118, 442
RsaI GTAC 2 cut(s) 620, 898
RsaNI GTAC 2 cut(s) 619, 897
SaqAI TTAA 5 cut(s) 68, 210, 297, 393, 474
SatI GCNGC 1 cut(s) 606
Sau3AI GATC 4 cut(s) 118, 134, 144, 442
Sau96I GGNCC 1 cut(s) 574
ScaI AGTACT 1 cut(s) 898
ScrFI CCNGG 1 cut(s) 516
SfaNI GCATC 5 cut(s) 372, 629, 758, 786, 850
SfcI CTRYAG 2 cut(s) 351, 705
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 3 cut(s) 122, 524, 634
SmoI CTYRAG 3 cut(s) 122, 524, 634
Sse9I AATT 5 cut(s) 14, 73, 627, 669, 761
SsiI CCGC 2 cut(s) 268, 605
SspMI CTAG 3 cut(s) 501, 717, 755
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 246, 312
TasI AATT 5 cut(s) 14, 73, 627, 669, 761
TatI WGTACW 1 cut(s) 896
TauI GCSGC 1 cut(s) 608
TfiI GAWTC 2 cut(s) 168, 264
Tru1I TTAA 5 cut(s) 68, 210, 297, 393, 474
Tru9I TTAA 5 cut(s) 68, 210, 297, 393, 474
TscAI CASTG 6 cut(s) 157, 166, 294, 513, 686, 834
TseFI GTSAC 3 cut(s) 406, 496, 729
Tsp45I GTSAC 3 cut(s) 406, 496, 729
TspDTI ATGAA 6 cut(s) 10, 27, 297, 422, 829, 935
TspRI CASTG 6 cut(s) 157, 166, 294, 513, 686, 834
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 3 cut(s) 14, 627, 761
XceI RCATGY 1 cut(s) 851
XmnI GAANNNNTTC 2 cut(s) 235, 629
XspI CTAG 3 cut(s) 501, 717, 755
ZrmI AGTACT 1 cut(s) 898
Zsp2I ATGCAT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.