Rh4AG312000

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001251
Physical Location & Seq
Forward (+)
62285507 .. 62296978
11472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG312000.1

Sequence Viewer

Length: 1086 bp
ATGGCAATGCAATTGCAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCTCTGTTTGTAAAGCTTTCATCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGACCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACTGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCAAAGGGTCTTAACCTTGTTCTGATTGATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATGCATGGAGAATTTGGTGGAAAAGTCGAGATTAAGAGCATGGTGATCGACTTAGCCAAATTGAGTGGGGAGGAAATAGCTAACGCCATAGAGGAAGGGATAGAAGGGATAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGCTTACCCTTATGCTAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATTATTAAGGTGAACTTGGGAGCAGCAACTTGGGTGACTAGGGCAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATATTGGTTCTAATTCAGCTAACCTCCCTTCTTTTCCTCTATATACTCTTTATTCTACAACCAAAGCGTACATTTCCATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCAGGGAATTGACATTCAGTGTCAGACTCCTCTTTTCGTTGCAACGAGGTTGACAAAACATGTCAAGGGACCTTCCTGGTTGATGGCCTCACCAGAGAAATTTAGCAAAGCAAGCGTTCGCTGGATTGGTGATGAGCCTCTGTGTAATCCCTACTGGTGGCACTCCGTGCAGTGGTTCATATTACAGGGGATCAGTAAGAGAGGCCAAAATGAGGAGTCCATTAAGAGATGCCCTGTTAACAGCAAGGAATGTCCTAAACAAGATCCTTCCAGTGTGGACAGCGGGATTGCTGTGACGTACATTATCAAGCGATTATCGGAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATGTTTTGGGAAGGTTCTTAAGTGACAACAATGACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

361

Amino Acids

39.94

Weight (kDa)

8.7

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 244 2e-39 short chain dehydrogenase
adh_short_C2 PF13561 54 - 250 2.3e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1022
AccI GTMKAC 1 cut(s) 1007
AciI CCGC 1 cut(s) 951
AclWI GGATC 2 cut(s) 866, 926
AcsI RAATTY 2 cut(s) 281, 767
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 2 cut(s) 626, 968
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 3 cut(s) 825, 840, 880
AflII CTTAAG 1 cut(s) 1063
AflIII ACRYGT 2 cut(s) 727, 1045
AgsI TTSAA 2 cut(s) 207, 998
AjnI CCWGG 2 cut(s) 520, 743
AluBI AGCT 5 cut(s) 71, 257, 350, 416, 575
AluI AGCT 5 cut(s) 71, 257, 350, 416, 575
Alw21I GWGCWC 1 cut(s) 1045
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 866, 926
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 2 cut(s) 753, 871
ApeKI GCWGC 3 cut(s) 35, 491, 667
ApoI RAATTY 2 cut(s) 281, 767
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 5 cut(s) 325, 490, 514, 750, 809
AvaII GGWCC 1 cut(s) 737
BanI GGYRCC 1 cut(s) 1022
Bbv12I GWGCWC 1 cut(s) 1045
BbvI GCAGC 3 cut(s) 47, 503, 679
BccI CCATC 2 cut(s) 84, 745
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 2 cut(s) 522, 745
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 429, 507
BfoI RGCGCY 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 1063
BisI GCNGC 3 cut(s) 36, 492, 668
BlsI GCNGC 3 cut(s) 37, 493, 669
Bme1390I CCNGG 2 cut(s) 522, 745
Bme18I GGWCC 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 738, 1024
BmrFI CCNGG 2 cut(s) 522, 745
BmsI GCATC 2 cut(s) 635, 887
BpuEI CTTGAG 4 cut(s) 113, 153, 515, 625
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 825, 840, 880
Bse1I ACTGG 3 cut(s) 163, 827, 939
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 522, 745
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 3 cut(s) 825, 840, 880
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 101, 1046
BseNI ACTGG 3 cut(s) 163, 827, 939
BseRI GAGGAG 2 cut(s) 687, 896
BseXI GCAGC 3 cut(s) 47, 503, 679
BsgI GTGCAG 1 cut(s) 857
BshFI GGCC 2 cut(s) 755, 873
BshNI GGYRCC 1 cut(s) 1022
BsiHKAI GWGCWC 1 cut(s) 1045
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 3 cut(s) 825, 840, 880
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 2 cut(s) 755, 873
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 1045
Bsp143I GATC 3 cut(s) 315, 858, 931
BspACI CCGC 1 cut(s) 951
BspANI GGCC 2 cut(s) 755, 873
BspCNI CTCAG 2 cut(s) 102, 1045
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 738, 1024
BspPI GGATC 2 cut(s) 866, 926
BspT107I GGYRCC 1 cut(s) 1022
BspTI CTTAAG 1 cut(s) 1063
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 3 cut(s) 163, 827, 939
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 315, 858, 931
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 522, 745
Bst4CI ACNGT 1 cut(s) 1082
BstAFI CTTAAG 1 cut(s) 1063
BstAPI GCANNNNNTGC 1 cut(s) 835
BstC8I GCNNGC 2 cut(s) 189, 781
BstDEI CTNAG 3 cut(s) 110, 322, 1032
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 318, 861, 934
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 3 cut(s) 315, 858, 931
BstMWI GCNNNNNNNGC 4 cut(s) 254, 413, 780, 835
BstNI CCWGG 2 cut(s) 522, 745
BstNSI RCATGY 2 cut(s) 731, 1049
BstSCI CCNGG 2 cut(s) 520, 743
BstV1I GCAGC 3 cut(s) 47, 503, 679
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
BsuRI GGCC 2 cut(s) 755, 873
BtsI GCAGTG 2 cut(s) 519, 845
BtsIMutI CAGTG 5 cut(s) 156, 519, 692, 845, 946
Cac8I GCNNGC 2 cut(s) 189, 781
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 737
Csp6I GTAC 2 cut(s) 625, 967
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 9 cut(s) 103, 275, 310, 440, 460, 634, 728, 1027, 1046
CviQI GTAC 2 cut(s) 625, 967
DdeI CTNAG 3 cut(s) 110, 322, 1032
DpnI GATC 3 cut(s) 317, 860, 933
DpnII GATC 3 cut(s) 315, 858, 931
DraI TTTAAA 1 cut(s) 1015
DraIII CACNNNGTG 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 737
Eco47III AGCGCT 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 737
EcoRII CCWGG 2 cut(s) 520, 743
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 2 cut(s) 276, 650
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 9 cut(s) 106, 278, 313, 443, 463, 637, 731, 1030, 1049
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 750
FatI CATG 9 cut(s) 102, 274, 309, 439, 459, 633, 727, 1026, 1045
FauI CCCGC 1 cut(s) 944
FblI GTMKAC 1 cut(s) 1007
Fnu4HI GCNGC 3 cut(s) 36, 492, 668
Fsp4HI GCNGC 3 cut(s) 36, 492, 668
FspBI CTAG 2 cut(s) 429, 507
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 36, 492, 668
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 2 cut(s) 755, 873
HhaI GCGC 1 cut(s) 250
Hin1II CATG 9 cut(s) 106, 278, 313, 443, 463, 637, 731, 1030, 1049
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 2 cut(s) 720, 907
HindII GTYRAC 2 cut(s) 720, 907
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 5 cut(s) 124, 694, 884, 1004, 1030
HpaI GTTAAC 1 cut(s) 907
HphI GGTGA 5 cut(s) 325, 490, 514, 750, 809
Hpy166II GTNNAC 5 cut(s) 481, 720, 907, 946, 1008
Hpy188I TCNGA 4 cut(s) 111, 228, 693, 988
Hpy188III TCNNGA 5 cut(s) 298, 440, 532, 642, 995
Hpy8I GTNNAC 5 cut(s) 481, 720, 907, 946, 1008
HpyAV CCTTC 8 cut(s) 14, 359, 368, 594, 750, 945, 983, 1050
HpyCH4III ACNGT 1 cut(s) 1082
HpyCH4IV ACGT 1 cut(s) 965
HpyCH4V TGCA 8 cut(s) 10, 16, 45, 274, 407, 648, 710, 838
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 413, 780, 835
HpyF3I CTNAG 3 cut(s) 110, 322, 1032
HpySE526I ACGT 1 cut(s) 965
Hsp92II CATG 9 cut(s) 106, 278, 313, 443, 463, 637, 731, 1030, 1049
HspAI GCGC 1 cut(s) 248
KspAI GTTAAC 1 cut(s) 907
Kzo9I GATC 3 cut(s) 315, 858, 931
LmnI GCTCC 2 cut(s) 488, 545
Lsp1109I GCAGC 3 cut(s) 47, 503, 679
LweI GCATC 2 cut(s) 635, 887
MaeI CTAG 2 cut(s) 429, 507
MaeII ACGT 1 cut(s) 965
MaeIII GTNAC 4 cut(s) 154, 502, 961, 1067
MalI GATC 3 cut(s) 317, 860, 933
MboI GATC 3 cut(s) 315, 858, 931
MboII GAAGA 2 cut(s) 547, 550
MfeI CAATTG 2 cut(s) 11, 549
MflI RGATCY 1 cut(s) 931
MhlI GDGCHC 1 cut(s) 1045
MluCI AATT 9 cut(s) 11, 174, 281, 329, 549, 568, 675, 767, 998
MlyI GAGTC 4 cut(s) 688, 893, 1013, 1024
Mph1103I ATGCAT 2 cut(s) 276, 650
MseI TTAA 8 cut(s) 216, 303, 399, 474, 891, 906, 1014, 1064
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 951
MspCI CTTAAG 1 cut(s) 1063
MspR9I CCNGG 2 cut(s) 522, 745
MunI CAATTG 2 cut(s) 11, 549
Mva1269I GAATGC 1 cut(s) 531
MvaI CCWGG 2 cut(s) 522, 745
MwoI GCNNNNNNNGC 4 cut(s) 254, 413, 780, 835
NdeII GATC 3 cut(s) 315, 858, 931
NlaIII CATG 9 cut(s) 106, 278, 313, 443, 463, 637, 731, 1030, 1049
NlaIV GGNNCC 2 cut(s) 738, 1024
NmuCI GTSAC 4 cut(s) 154, 502, 961, 1067
NsiI ATGCAT 2 cut(s) 276, 650
NspI RCATGY 2 cut(s) 731, 1049
PagI TCATGA 1 cut(s) 439
PciI ACATGT 2 cut(s) 727, 1045
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 37, 493, 669
PleI GAGTC 4 cut(s) 688, 892, 1012, 1024
PpsI GAGTC 4 cut(s) 688, 892, 1012, 1024
PpuMI RGGWCCY 1 cut(s) 737
PscI ACATGT 2 cut(s) 727, 1045
Psp5II RGGWCCY 1 cut(s) 737
Psp6I CCWGG 2 cut(s) 520, 743
PspGI CCWGG 2 cut(s) 520, 743
PspN4I GGNNCC 2 cut(s) 738, 1024
PspPI GGNCC 1 cut(s) 737
PspPPI RGGWCCY 1 cut(s) 737
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 2 cut(s) 626, 968
RsaNI GTAC 2 cut(s) 625, 967
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 8 cut(s) 216, 303, 399, 474, 891, 906, 1014, 1064
SatI GCNGC 3 cut(s) 36, 492, 668
Sau3AI GATC 3 cut(s) 315, 858, 931
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 4 cut(s) 688, 893, 1013, 1024
ScrFI CCNGG 2 cut(s) 522, 745
SduI GDGCHC 1 cut(s) 1045
SfaNI GCATC 2 cut(s) 635, 887
SinI GGWCC 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 5 cut(s) 128, 168, 530, 640, 1063
SmoI CTYRAG 5 cut(s) 128, 168, 530, 640, 1063
Sse9I AATT 9 cut(s) 11, 174, 281, 329, 549, 568, 675, 767, 998
SsiI CCGC 1 cut(s) 951
SspI AATATT 2 cut(s) 469, 559
SspMI CTAG 2 cut(s) 429, 507
StyD4I CCNGG 2 cut(s) 520, 743
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 1082
TaiI ACGT 1 cut(s) 968
TaqI TCGA 3 cut(s) 252, 297, 318
TasI AATT 9 cut(s) 11, 174, 281, 329, 549, 568, 675, 767, 998
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 8 cut(s) 216, 303, 399, 474, 891, 906, 1014, 1064
Tru9I TTAA 8 cut(s) 216, 303, 399, 474, 891, 906, 1014, 1064
TscAI CASTG 5 cut(s) 163, 519, 692, 845, 946
TseFI GTSAC 4 cut(s) 154, 502, 961, 1067
TseI GCWGC 3 cut(s) 35, 491, 667
Tsp45I GTSAC 4 cut(s) 154, 502, 961, 1067
TspDTI ATGAA 6 cut(s) 16, 43, 64, 282, 428, 835
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 5 cut(s) 163, 519, 692, 845, 946
Vha464I CTTAAG 1 cut(s) 1063
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 2 cut(s) 281, 767
XceI RCATGY 2 cut(s) 731, 1049
XmiI GTMKAC 1 cut(s) 1007
XspI CTAG 2 cut(s) 429, 507
Zsp2I ATGCAT 2 cut(s) 276, 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.