RchiOBHm_Chr4g0432141

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
56314393 .. 56314611
219 bp
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UTR
Exon/CDS
Intron
PRQ40078

Sequence Viewer

Length: 219 bp
ATGACTTACCCTTATGCAAGGTTCTTTCATGAGGTTGATTTGGAGCTAATGGAGAGCATTACAAAGGTGAACATGGAAGCCCCAAGTTGGGTGACTAGGGCAGTTCTTACCGGTATGCTCAAAAAGAAGAAAGGAGCAATTATCAATATCGGCTCTGATTTATCCGAGGATCCTTCTTTGCCTCTATACACTCTTTATGCTGCTTCTAATAAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

72

Amino Acids

8.08

Weight (kDa)

6.55

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 8 - 69 1.2e-10 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 164, 177
AfiI CCNNNNNNNGG 2 cut(s) 87, 88
AgeI ACCGGT 1 cut(s) 110
AluBI AGCT 1 cut(s) 46
AluI AGCT 1 cut(s) 46
AlwI GGATC 2 cut(s) 164, 177
ApeKI GCWGC 1 cut(s) 200
AsiGI ACCGGT 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 79, 103
BamHI GGATCC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 187
BfaI CTAG 1 cut(s) 96
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 88
Bse118I RCCGGY 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 87, 88
BseXI GCAGC 1 cut(s) 187
BshTI ACCGGT 1 cut(s) 110
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 87, 88
Bsp143I GATC 1 cut(s) 169
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 171
BspPI GGATC 2 cut(s) 164, 177
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 169
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstV1I GCAGC 1 cut(s) 187
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
CciI TCATGA 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 110
CspAI ACCGGT 1 cut(s) 110
CviAII CATG 2 cut(s) 29, 73
CviJI RGCY 3 cut(s) 46, 80, 153
CviKI_1 RGCY 3 cut(s) 46, 80, 153
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
FaeI CATG 2 cut(s) 32, 76
FaiI YATR 6 cut(s) 15, 30, 74, 116, 187, 198
FatI CATG 2 cut(s) 28, 72
Fnu4HI GCNGC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 201
HapII CCGG 1 cut(s) 111
Hin1II CATG 2 cut(s) 32, 76
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 79, 103
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 157, 166
Hpy188III TCNNGA 2 cut(s) 29, 216
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 17
Hsp92II CATG 2 cut(s) 32, 76
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 43, 134
LpnPI CCDG 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 187
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 91
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 169
MluCI AATT 1 cut(s) 138
MnlI CCTC 3 cut(s) 25, 160, 192
MspI CCGG 1 cut(s) 111
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 32, 76
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 91
PagI TCATGA 1 cut(s) 28
PinAI ACCGGT 1 cut(s) 110
PkrI GCNGC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 169
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 169
SetI ASST 4 cut(s) 23, 36, 48, 69
SgeI CNNG 7 cut(s) 30, 41, 85, 96, 108, 123, 178
Sse9I AATT 1 cut(s) 138
SspMI CTAG 1 cut(s) 96
TasI AATT 1 cut(s) 138
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.