Rh4CG334600

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001251
Physical Location & Seq
Forward (+)
59513087 .. 59515358
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG334600.1

Sequence Viewer

Length: 975 bp
ATGGCAATGCAATTGCAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCTCTGTTTGTAAAGCTTTCATCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGACCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACTGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCAAAGGGTCTTAACCTTGTTCTGATTGATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATGCATGGAGAATTTGGTGGAAAAGTCGAGATTAAGAGCATGGTGATCGACTTAGCCAAATTGAGTGGGGAGGAAATAGCTAACGCCATAGAGGAAGGGATAGAAGGGATAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGCTTACCCTTATGCTAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATTATTAAGGTGAACTTGGGAGCAGCAACTTGGGTGACTAGGGCAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTGTCAATATTGGTTCTAATTCAGCTAACCTCCCTTCTTTTCCTCTATATACTCTTTATTCTACAACCAAAGCGTACATTTCCATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCAGGGAATTGACATTCAGTGTCAGACTCCTCTTTTCGTTGCAACGAGGTTGACAAAACATGTCAAGGGACCTTCCTGGTTGATGGCCTCACCAGAGAAATTTAGCAAAGCAAGCGTTCGCTGGATTGGTGATGAGCCTCTGTGTAATCCCTACTGGTGGCACTCCGTGCAGTGGTTCATATTACAGGTGGCCTCGCCGGATGTGTTATTGAATGCCATCATTTACTGGACCGGCATTCGGATCAGAAAGAGAGGCCAAATGAAGGAGGCACAGAGCAAGATGCATCAACAGGAAAATGCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

324

Amino Acids

36.09

Weight (kDa)

8.95

Isoelectric Point (pI)

33.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 244 1.5e-39 short chain dehydrogenase
adh_short_C2 PF13561 54 - 250 1.7e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 917
AcsI RAATTY 2 cut(s) 281, 767
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 1 cut(s) 626
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 4 cut(s) 825, 840, 906, 931
AflIII ACRYGT 1 cut(s) 727
AgsI TTSAA 2 cut(s) 207, 880
AjnI CCWGG 2 cut(s) 520, 743
AluBI AGCT 5 cut(s) 71, 257, 350, 416, 575
AluI AGCT 5 cut(s) 71, 257, 350, 416, 575
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 917
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 3 cut(s) 753, 858, 922
ApeKI GCWGC 3 cut(s) 35, 491, 667
ApoI RAATTY 2 cut(s) 281, 767
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 2 cut(s) 737, 897
AsuHPI GGTGA 5 cut(s) 325, 490, 514, 750, 809
AvaII GGWCC 2 cut(s) 737, 897
BbvI GCAGC 3 cut(s) 47, 503, 679
BccI CCATC 3 cut(s) 84, 745, 893
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 2 cut(s) 522, 745
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 429, 507
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 3 cut(s) 36, 492, 668
BlsI GCNGC 3 cut(s) 37, 493, 669
Bme1390I CCNGG 2 cut(s) 522, 745
Bme18I GGWCC 2 cut(s) 737, 897
BmgT120I GGNCC 2 cut(s) 737, 897
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 2 cut(s) 522, 745
BmsI GCATC 3 cut(s) 635, 939, 961
BpuEI CTTGAG 4 cut(s) 113, 153, 515, 625
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 4 cut(s) 825, 840, 906, 931
Bse118I RCCGGY 1 cut(s) 899
Bse1I ACTGG 3 cut(s) 163, 827, 899
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 522, 745
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 874
BseLI CCNNNNNNNGG 4 cut(s) 825, 840, 906, 931
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 3 cut(s) 163, 827, 899
BseRI GAGGAG 1 cut(s) 687
BseXI GCAGC 3 cut(s) 47, 503, 679
BsgI GTGCAG 1 cut(s) 857
BshFI GGCC 3 cut(s) 755, 860, 924
BsiSI CCGG 2 cut(s) 866, 900
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 4 cut(s) 825, 840, 906, 931
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 3 cut(s) 531, 886, 903
BsnI GGCC 3 cut(s) 755, 860, 924
Bso31I GGTCTC 1 cut(s) 106
Bsp143I GATC 2 cut(s) 315, 909
BspANI GGCC 3 cut(s) 755, 860, 924
BspCNI CTCAG 1 cut(s) 102
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 1 cut(s) 738
BspPI GGATC 1 cut(s) 917
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 899
BsrI ACTGG 3 cut(s) 163, 827, 899
BssAI RCCGGY 1 cut(s) 899
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 315, 909
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 522, 745
BstAPI GCANNNNNTGC 1 cut(s) 835
BstC8I GCNNGC 2 cut(s) 189, 781
BstDEI CTNAG 2 cut(s) 110, 322
BstF5I GGATG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 2 cut(s) 318, 912
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 315, 909
BstMWI GCNNNNNNNGC 4 cut(s) 254, 413, 780, 835
BstNI CCWGG 2 cut(s) 522, 745
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 2 cut(s) 520, 743
BstV1I GCAGC 3 cut(s) 47, 503, 679
BsuRI GGCC 3 cut(s) 755, 860, 924
BtsCI GGATG 1 cut(s) 874
BtsI GCAGTG 2 cut(s) 519, 845
BtsIMutI CAGTG 4 cut(s) 156, 519, 692, 845
Cac8I GCNNGC 2 cut(s) 189, 781
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 899
Cfr13I GGNCC 2 cut(s) 737, 897
Csp6I GTAC 1 cut(s) 625
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 7 cut(s) 103, 275, 310, 440, 460, 634, 728
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 2 cut(s) 110, 322
DpnI GATC 2 cut(s) 317, 911
DpnII GATC 2 cut(s) 315, 909
DraIII CACNNNGTG 1 cut(s) 835
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 737, 897
Eco47III AGCGCT 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 737
EcoRII CCWGG 2 cut(s) 520, 743
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 4 cut(s) 276, 650, 954, 970
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 7 cut(s) 106, 278, 313, 443, 463, 637, 731
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 750
FatI CATG 7 cut(s) 102, 274, 309, 439, 459, 633, 727
Fnu4HI GCNGC 3 cut(s) 36, 492, 668
FokI GGATG 1 cut(s) 881
Fsp4HI GCNGC 3 cut(s) 36, 492, 668
FspBI CTAG 2 cut(s) 429, 507
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 36, 492, 668
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 3 cut(s) 755, 860, 924
HapII CCGG 2 cut(s) 866, 900
HhaI GCGC 1 cut(s) 250
Hin1II CATG 7 cut(s) 106, 278, 313, 443, 463, 637, 731
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 2 cut(s) 124, 694
HpaII CCGG 2 cut(s) 866, 900
HphI GGTGA 5 cut(s) 325, 490, 514, 750, 809
Hpy166II GTNNAC 2 cut(s) 481, 720
Hpy188I TCNGA 5 cut(s) 111, 228, 693, 909, 914
Hpy188III TCNNGA 4 cut(s) 298, 440, 532, 642
Hpy8I GTNNAC 2 cut(s) 481, 720
HpyAV CCTTC 6 cut(s) 14, 359, 368, 594, 750, 925
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 413, 780, 835
HpyF3I CTNAG 2 cut(s) 110, 322
Hsp92II CATG 7 cut(s) 106, 278, 313, 443, 463, 637, 731
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 315, 909
LmnI GCTCC 2 cut(s) 488, 545
Lsp1109I GCAGC 3 cut(s) 47, 503, 679
LweI GCATC 3 cut(s) 635, 939, 961
MaeI CTAG 2 cut(s) 429, 507
MaeIII GTNAC 2 cut(s) 154, 502
MalI GATC 2 cut(s) 317, 911
MboI GATC 2 cut(s) 315, 909
MboII GAAGA 2 cut(s) 547, 550
MfeI CAATTG 2 cut(s) 11, 549
MluCI AATT 8 cut(s) 11, 174, 281, 329, 549, 568, 675, 767
MlyI GAGTC 1 cut(s) 688
Mph1103I ATGCAT 4 cut(s) 276, 650, 954, 970
MseI TTAA 4 cut(s) 216, 303, 399, 474
MslI CAYNNNNRTG 1 cut(s) 632
MspI CCGG 2 cut(s) 866, 900
MspR9I CCNGG 2 cut(s) 522, 745
MunI CAATTG 2 cut(s) 11, 549
Mva1269I GAATGC 3 cut(s) 531, 886, 903
MvaI CCWGG 2 cut(s) 522, 745
MwoI GCNNNNNNNGC 4 cut(s) 254, 413, 780, 835
NdeII GATC 2 cut(s) 315, 909
NlaIII CATG 7 cut(s) 106, 278, 313, 443, 463, 637, 731
NlaIV GGNNCC 1 cut(s) 738
NmuCI GTSAC 2 cut(s) 154, 502
NsiI ATGCAT 4 cut(s) 276, 650, 954, 970
NspI RCATGY 1 cut(s) 731
PagI TCATGA 1 cut(s) 439
PciI ACATGT 1 cut(s) 727
PctI GAATGC 3 cut(s) 531, 886, 903
PfeI GAWTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 37, 493, 669
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 737
PscI ACATGT 1 cut(s) 727
Psp5II RGGWCCY 1 cut(s) 737
Psp6I CCWGG 2 cut(s) 520, 743
PspGI CCWGG 2 cut(s) 520, 743
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 2 cut(s) 737, 897
PspPPI RGGWCCY 1 cut(s) 737
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 4 cut(s) 216, 303, 399, 474
SatI GCNGC 3 cut(s) 36, 492, 668
Sau3AI GATC 2 cut(s) 315, 909
Sau96I GGNCC 2 cut(s) 737, 897
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 2 cut(s) 522, 745
SfaNI GCATC 3 cut(s) 635, 939, 961
SinI GGWCC 2 cut(s) 737, 897
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 4 cut(s) 128, 168, 530, 640
SmoI CTYRAG 4 cut(s) 128, 168, 530, 640
Sse9I AATT 8 cut(s) 11, 174, 281, 329, 549, 568, 675, 767
SspI AATATT 2 cut(s) 469, 559
SspMI CTAG 2 cut(s) 429, 507
StyD4I CCNGG 2 cut(s) 520, 743
StyI CCWWGG 1 cut(s) 192
TaqI TCGA 3 cut(s) 252, 297, 318
TasI AATT 8 cut(s) 11, 174, 281, 329, 549, 568, 675, 767
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 4 cut(s) 216, 303, 399, 474
Tru9I TTAA 4 cut(s) 216, 303, 399, 474
TscAI CASTG 4 cut(s) 163, 519, 692, 845
TseFI GTSAC 2 cut(s) 154, 502
TseI GCWGC 3 cut(s) 35, 491, 667
Tsp45I GTSAC 2 cut(s) 154, 502
TspDTI ATGAA 7 cut(s) 16, 43, 64, 282, 428, 835, 944
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 4 cut(s) 163, 519, 692, 845
VpaK11BI GGWCC 2 cut(s) 737, 897
XapI RAATTY 2 cut(s) 281, 767
XceI RCATGY 1 cut(s) 731
XspI CTAG 2 cut(s) 429, 507
Zsp2I ATGCAT 4 cut(s) 276, 650, 954, 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.