Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001251

Physical Location & Seq

Genomic Coordinates Forward (+)

26953343 .. 26954342

Gene Structure 1000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g25020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCAATGGAACTACAAGAAGCTTTCATTGTAGCAGCAAGCTGCATAGGCTTCATCTCTGTTTGTAAAGCTTTCGTCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGACCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGGCATTGTCACTGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTTGAGTTAGCCTCCAAGGGTCTTAACCTTGTCCTGATCGATAAAAACCATTCGGCGCTTGAAGCTACCTGCAATGAAATACTTGAAAATTTTGGTGGAAATGTCCAGATTAAGAGCATGGTCATCGACTTAGCCAAATTGAGAGGGGAGGAAATAGCTAATGCCATAGAAGAAGAGATAAAAGGGCTAGATGTTGGTGTTCTGATCAACAATGTAGGGATGGCTTACCCTTATGCAAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATCATAAAGTTGAACTTGGGAGCAGCAACTTGGGTGACCAGGGCAGTGCTTCCAGGAATGCTGAAGAAGAAGAAAGGAACAATTGTCAATATCAGTTCTAATTCAGCTCACCTCCCCTCTTTTCCTCTATACACTCTTTTTATTCTACAACCAAAGCGTGAGTTTTTTGTACAATCATTTCAATTCTTTCATGCATGTTTCATCCTTGCATTGAAATTAGAAATCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

233

Amino Acids

25.82

Weight (kDa)

7.67

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	51 - 196	4.1e-28	short chain dehydrogenase
adh_short_C2	PF13561	54 - 193	5.3e-16	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001251)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25000 FvH4_4g25000 FvH4_4g25020 FvH4_4g25030 FvH4_4g25040 FvH4_4g25041 FvH4_4g25043
malus_domestica	MD13G1107300.v1.1 MD13G1107400.v1.1 MD16G1107200.v1.1 MD16G1107300.v1.1
prunus_persica	Prupe.1G239100_v2.0.a1 Prupe.1G239200_v2.0.a1
pyrus_communis	pycom13g09290 pycom16g09130
rosa_chinensis	RchiOBHm_Chr4g0432081 RchiOBHm_Chr4g0432091 RchiOBHm_Chr4g0432111 RchiOBHm_Chr4g0432131 RchiOBHm_Chr4g0432141 RchiOBHm_Chr4g0432151 RchiOBHm_Chr4g0432161 RchiOBHm_Chr4g0432171 RchiOBHm_Chr4g0432201
rosa_laevigata	RLG00000006862 RLG00000006863 RLG00000006864 RLG00000006865
rosa_multiflora	Rmu_sc0000285.1_g000006 Rmu_sc0000285.1_g000015 Rmu_sc0004965.1_g000028
rosa_roxburghii	Rroxscaffold_5G00373620 Rroxscaffold_5G00373630
rosa_rugosa	Rorug04G0254500 Rorug04G0254600 Rorug04G0254700 Rorug04G0254800 Rorug04G0254900 Rorug04G0255000 Rorug04G0255100 Rorug04G0255200
rosa_samantha	Rh4AG311900 Rh4AG312000 Rh4AG312100 Rh4AG312200 Rh4BG319100 Rh4BG319500 Rh4BG319700 Rh4CG334600 Rh4DG314700 Rh4DG314900 Rh4DG315200
rosa_wichuraiana	Rw4G027120 Rw4G027130 Rw4G027140 Rw4G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	280
AcuI	CTGAAG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	254, 278, 481, 650, 682
AjnI	CCWGG	2 cut(s)	506, 520
AluBI	AGCT	6 cut(s)	23, 42, 71, 257, 350, 575
AluI	AGCT	6 cut(s)	23, 42, 71, 257, 350, 575
Alw26I	GTCTC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	35, 42, 491
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	514, 569
BbvI	GCAGC	3 cut(s)	29, 47, 503
BccI	CCATC	2 cut(s)	84, 406
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	2 cut(s)	508, 522
BclI	TGATCA	1 cut(s)	396
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	380
BfoI	RGCGCY	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	36, 43, 492
BlsI	GCNGC	3 cut(s)	37, 44, 493
Bme1390I	CCNGG	2 cut(s)	508, 522
BmrFI	CCNGG	2 cut(s)	508, 522
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BpuEI	CTTGAG	2 cut(s)	113, 153
Bsa29I	ATCGAT	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	207, 507
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	2 cut(s)	12, 271
BseBI	CCWGG	2 cut(s)	508, 522
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	207, 507
BseGI	GGATG	2 cut(s)	417, 669
BseMI	GCAATG	2 cut(s)	12, 271
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	29, 47, 503
BshVI	ATCGAT	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	106
BsmI	GAATGC	1 cut(s)	531
Bso31I	GGTCTC	1 cut(s)	106
Bsp1407I	TGTACA	1 cut(s)	637
Bsp143I	GATC	2 cut(s)	228, 396
BspCNI	CTCAG	1 cut(s)	102
BspDI	ATCGAT	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	269
BspTNI	GGTCTC	1 cut(s)	106
BsrDI	GCAATG	2 cut(s)	12, 271
BsrGI	TGTACA	1 cut(s)	637
BsrI	ACTGG	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	207, 507
BssMI	GATC	2 cut(s)	228, 396
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	508, 522
Bst6I	CTCTTC	1 cut(s)	360
BstAUI	TGTACA	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	40, 189
BstDEI	CTNAG	2 cut(s)	110, 322
BstEII	GGTNACC	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	417, 669
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	231, 399
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	228, 396
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 147, 254
BstNI	CCWGG	2 cut(s)	508, 522
BstNSI	RCATGY	1 cut(s)	666
BstPI	GGTNACC	1 cut(s)	502
BstSCI	CCNGG	2 cut(s)	506, 520
BstV1I	GCAGC	3 cut(s)	29, 47, 503
Bsu15I	ATCGAT	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	417, 669
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	156, 519
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	40, 189
CciI	TCATGA	1 cut(s)	439
CfoI	GCGC	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	638
CviAII	CATG	6 cut(s)	103, 310, 440, 460, 659, 663
CviQI	GTAC	1 cut(s)	638
DdeI	CTNAG	2 cut(s)	110, 322
DpnI	GATC	2 cut(s)	230, 398
DpnII	GATC	2 cut(s)	228, 396
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	502
EcoO65I	GGTNACC	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	506, 520
EcoT14I	CCWWGG	1 cut(s)	207
EcoT22I	ATGCAT	1 cut(s)	664
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	6 cut(s)	106, 313, 443, 463, 662, 666
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	6 cut(s)	102, 309, 439, 459, 658, 662
FbaI	TGATCA	1 cut(s)	396
Fnu4HI	GCNGC	3 cut(s)	36, 43, 492
FokI	GGATG	2 cut(s)	424, 656
Fsp4HI	GCNGC	3 cut(s)	36, 43, 492
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	36, 43, 492
HaeII	RGCGCY	1 cut(s)	251
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	6 cut(s)	106, 313, 443, 463, 662, 666
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	21, 69
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	514, 569
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	2 cut(s)	111, 396
Hpy188III	TCNNGA	3 cut(s)	226, 298, 440
Hpy8I	GTNNAC	1 cut(s)	79
HpyCH4V	TGCA	5 cut(s)	45, 264, 428, 662, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 147, 254
HpyF3I	CTNAG	2 cut(s)	110, 322
Hsp92II	CATG	6 cut(s)	106, 313, 443, 463, 662, 666
HspAI	GCGC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	228, 396
LmnI	GCTCC	1 cut(s)	488
LpnPI	CCDG	8 cut(s)	144, 239, 274, 311, 493, 507, 520, 534
Lsp1109I	GCAGC	3 cut(s)	29, 47, 503
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	154, 502
MalI	GATC	2 cut(s)	230, 398
MboI	GATC	2 cut(s)	228, 396
MboII	GAAGA	5 cut(s)	374, 377, 544, 547, 550
MfeI	CAATTG	1 cut(s)	549
MluCI	AATT	7 cut(s)	174, 280, 329, 549, 568, 650, 683
MnlI	CCTC	7 cut(s)	214, 329, 334, 436, 590, 595, 603
Mph1103I	ATGCAT	1 cut(s)	664
MseI	TTAA	3 cut(s)	216, 303, 697
MspR9I	CCNGG	2 cut(s)	508, 522
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	508, 522
MwoI	GCNNNNNNNGC	3 cut(s)	48, 147, 254
NdeII	GATC	2 cut(s)	228, 396
NlaIII	CATG	6 cut(s)	106, 313, 443, 463, 662, 666
NmuCI	GTSAC	2 cut(s)	154, 502
NsiI	ATGCAT	1 cut(s)	664
NspI	RCATGY	1 cut(s)	666
PagI	TCATGA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	531
PfeI	GAWTC	1 cut(s)	124
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	37, 44, 493
Psp6I	CCWGG	2 cut(s)	506, 520
PspEI	GGTNACC	1 cut(s)	502
PspGI	CCWGG	2 cut(s)	506, 520
RsaI	GTAC	1 cut(s)	639
RsaNI	GTAC	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	216, 303, 697
SatI	GCNGC	3 cut(s)	36, 43, 492
Sau3AI	GATC	2 cut(s)	228, 396
ScrFI	CCNGG	2 cut(s)	508, 522
SmlI	CTYRAG	2 cut(s)	128, 168
SmoI	CTYRAG	2 cut(s)	128, 168
Sse9I	AATT	7 cut(s)	174, 280, 329, 549, 568, 650, 683
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	2 cut(s)	506, 520
StyI	CCWWGG	1 cut(s)	207
TaqI	TCGA	2 cut(s)	231, 318
TasI	AATT	7 cut(s)	174, 280, 329, 549, 568, 650, 683
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	3 cut(s)	216, 303, 697
Tru9I	TTAA	3 cut(s)	216, 303, 697
TscAI	CASTG	2 cut(s)	163, 519
TseFI	GTSAC	2 cut(s)	154, 502
TseI	GCWGC	3 cut(s)	35, 42, 491
Tsp45I	GTSAC	2 cut(s)	154, 502
TspDTI	ATGAA	6 cut(s)	16, 43, 282, 428, 647, 658
TspRI	CASTG	2 cut(s)	163, 519
XapI	RAATTY	1 cut(s)	280
XceI	RCATGY	1 cut(s)	666
XspI	CTAG	1 cut(s)	380
Zsp2I	ATGCAT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.