Rh4BG319700

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0001251
Physical Location & Seq
Forward (+)
48645798 .. 48646456
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG319700.1

Sequence Viewer

Length: 624 bp
ATGGAATTACAAGAATTTTTCATAGTCCTAGCAATCACTATAGGGTTGGTATCTGTTTGTATATCTTTGATCAATTTTGCGAAATGGATATGGGTCATGTTTCTGAGACCTTCAAAGAAACTCAAGGAGTACGGATCATGGGCTATTATCACTGGCTCTGCTCAAGGAATTGGGAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGTCTCAACATTTTCTTGGTTGATAAAAACCATTCAACCCTTGAAGCTACCTCCAATGAATTAAGTGAAAAACATGGTTGGAGAGTTGAGATCAAGAGCATTGTGATGGACTTGGCCAAATTGAGTGGTGAGGAGATAGCTAAAACCATAGAGGAAGGAACGAAAGGGCTCGATGTTGGCATTTTGGTTAATAATGCAGGGATGTGTTACCCTTATCCAAGGTTTTTTCATGAGGTTGATTCAGAACTCATGGAGAACATTATGAAGGTGAACATGGAAGCAGCAACTTGGATGACTAAGGCTGTGCTTCCGGGAATGCTGAAGAAAAAGAAAGGAGCAATTGTCAACATTGGCTCTGCTTCCACTGAGATAGCCCCTTCTTTTCCTCTGTACACTCTTTATGCCACAACAAAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

207

Amino Acids

22.87

Weight (kDa)

7.72

Isoelectric Point (pI)

28.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 207 2.3e-32 short chain dehydrogenase
adh_short_C2 PF13561 52 - 207 9.4e-19 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 142
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 545
AfaI GTAC 2 cut(s) 131, 596
AgsI TTSAA 5 cut(s) 114, 191, 201, 240, 248
AluBI AGCT 2 cut(s) 251, 344
AluI AGCT 2 cut(s) 251, 344
Alw26I GTCTC 2 cut(s) 100, 212
AlwI GGATC 1 cut(s) 142
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 516
AsuHPI GGTGA 2 cut(s) 344, 484
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 375
BbvI GCAGC 1 cut(s) 497
BccI CCATC 1 cut(s) 304
BclI TGATCA 1 cut(s) 69
BcnI CCSGG 1 cut(s) 516
BcoDI GTCTC 2 cut(s) 100, 212
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 107, 147
BpuMI CCSGG 1 cut(s) 516
BsaI GGTCTC 2 cut(s) 100, 212
BsaJI CCNNGG 1 cut(s) 422
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bse1I ACTGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 2 cut(s) 411, 501
BseMII CTCAG 2 cut(s) 95, 561
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 1 cut(s) 497
BshFI GGCC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 515
BsmAI GTCTC 2 cut(s) 100, 212
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 2 cut(s) 100, 212
Bsp1286I GDGCHC 1 cut(s) 375
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 3 cut(s) 69, 134, 294
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 2 cut(s) 96, 562
BspHI TCATGA 1 cut(s) 433
BspPI GGATC 1 cut(s) 142
BspTNI GGTCTC 2 cut(s) 100, 212
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 3 cut(s) 69, 134, 294
BssT1I CCWWGG 1 cut(s) 422
BstAUI TGTACA 1 cut(s) 594
BstDEI CTNAG 3 cut(s) 104, 501, 570
BstF5I GGATG 2 cut(s) 411, 501
BstKTI GATC 3 cut(s) 72, 137, 297
BstMAI GTCTC 2 cut(s) 100, 212
BstMBI GATC 3 cut(s) 69, 134, 294
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 497
BsuRI GGCC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 411, 501
BtsIMutI CAGTG 2 cut(s) 150, 567
CciI TCATGA 1 cut(s) 433
Csp6I GTAC 2 cut(s) 130, 595
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 6 cut(s) 97, 138, 278, 434, 454, 478
CviQI GTAC 2 cut(s) 130, 595
DdeI CTNAG 3 cut(s) 104, 501, 570
DpnI GATC 3 cut(s) 71, 136, 296
DpnII GATC 3 cut(s) 69, 134, 294
EaeI YGGCCR 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 422
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 2 cut(s) 100, 212
Eco57I CTGAAG 1 cut(s) 545
EcoT14I CCWWGG 1 cut(s) 422
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 422
FaeI CATG 6 cut(s) 100, 141, 281, 437, 457, 481
FatI CATG 6 cut(s) 96, 137, 277, 433, 453, 477
FbaI TGATCA 1 cut(s) 69
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 2 cut(s) 418, 508
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 486
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 515
Hin1II CATG 6 cut(s) 100, 141, 281, 437, 457, 481
HincII GTYRAC 1 cut(s) 550
HindII GTYRAC 1 cut(s) 550
HinfI GANTC 1 cut(s) 443
HpaII CCGG 1 cut(s) 515
HphI GGTGA 2 cut(s) 344, 484
Hpy166II GTNNAC 3 cut(s) 475, 550, 597
Hpy188I TCNGA 2 cut(s) 105, 448
Hpy188III TCNNGA 2 cut(s) 298, 434
Hpy8I GTNNAC 3 cut(s) 475, 550, 597
HpyAV CCTTC 4 cut(s) 120, 353, 463, 591
HpyCH4V TGCA 1 cut(s) 401
HpyF3I CTNAG 3 cut(s) 104, 501, 570
Hsp92II CATG 6 cut(s) 100, 141, 281, 437, 457, 481
Ksp22I TGATCA 1 cut(s) 69
Kzo9I GATC 3 cut(s) 69, 134, 294
LmnI GCTCC 1 cut(s) 539
LpnPI CCDG 3 cut(s) 138, 387, 528
Lsp1109I GCAGC 1 cut(s) 497
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 1 cut(s) 410
MalI GATC 3 cut(s) 71, 136, 296
MboI GATC 3 cut(s) 69, 134, 294
MboII GAAGA 1 cut(s) 538
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 320
MluCI AATT 7 cut(s) 5, 14, 73, 168, 263, 323, 543
MluNI TGGCCA 1 cut(s) 320
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 5 cut(s) 265, 328, 349, 430, 600
Mox20I TGGCCA 1 cut(s) 320
MscI TGGCCA 1 cut(s) 320
MseI TTAA 2 cut(s) 266, 393
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 1 cut(s) 515
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 543
Mva1269I GAATGC 1 cut(s) 525
NciI CCSGG 1 cut(s) 516
NdeII GATC 3 cut(s) 69, 134, 294
NlaIII CATG 6 cut(s) 100, 141, 281, 437, 457, 481
PagI TCATGA 1 cut(s) 433
PctI GAATGC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 443
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 1 cut(s) 487
RsaI GTAC 2 cut(s) 131, 596
RsaNI GTAC 2 cut(s) 130, 595
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 2 cut(s) 266, 393
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 3 cut(s) 69, 134, 294
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 112, 253, 257, 346, 428, 441, 474
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 122, 162
SmoI CTYRAG 2 cut(s) 122, 162
Sse9I AATT 7 cut(s) 5, 14, 73, 168, 263, 323, 543
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 422
TaqI TCGA 1 cut(s) 375
TasI AATT 7 cut(s) 5, 14, 73, 168, 263, 323, 543
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 266, 393
Tru9I TTAA 2 cut(s) 266, 393
TscAI CASTG 2 cut(s) 157, 574
TseI GCWGC 1 cut(s) 485
TspDTI ATGAA 4 cut(s) 10, 276, 422, 482
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 157, 574
XapI RAATTY 1 cut(s) 14
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.