Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001251

Physical Location & Seq

Genomic Coordinates Forward (+)

25365176 .. 25367126

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G239100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGAATTCCAAGAACTTTTCACAGTGGTAGCAACCACTATAGGCTTCATCTCTCTTTGCAAAAGCTCCATCAATTTTCTCAGATGGGTTTGGGTCATGTTTCTGAGACCCCAAAAGAATCTCAAGGAATATGGATCATGGGCTCTCATCACTGGCGCAGCTGATGGAATTGGCAGAGCCCTTGCCTTTGAAATGGCTGCAAAGGGTCTTCACCTAGTGCTGCTTGATCGAAACGTTTCAAAGCTCGAAGCTACCGCCAACGAAATACATGAAAGATTTGGTGAACGAGTTGAGATCAAGAAAATTGTCATGGACTTGGCCAAGCTCAGTGGGGAGGAGATAGCTAAAGCCATAGAGGAGGAAATAAAAGGGCTTGATGTTGGTGTTTTGGTTAACAACGCAGGAGTGGCTTACTCTTATGGAAAGTTTTTTCATGAGGTTGATGATTTGGAGCTGATGGATAGCATTAAGGTGAACATGGAGGCTGCCACGTGGATCACTTGGGTAGTGCTTCCAAGTATGCTCAAGAAGAAGAAGGGAGCTATTGTCAATATTGGATCTGGCTCTGGTTCCTCTGCCCTTCCTTCTTTCCCTCTCTACACCAATTATGCTGCTTCCAAAGCGTACCTTTCAATGTTCTCAACAAGCATAAGTTTGGAATACAAGCAGCATGGAATTGACATTCAGTGCCAGATTCCTATGTTCGTGTCGACAAGGTTGTCAAGGACCAAGGCGTATCCCTTGTTCGTCCCAACGCCAGAGACGTATAGCAAAGCAAGCATACGATGGATTGGTTATGAACATCAATGTTCGCCCTACTGGGGCCATTCTGTGCAGTGCCTCCTAACACATCCATTGCCCGACGTCGTATTGAGTGCATTCATTTTTTGGTACTCTCAGAGGATCCGAAAGAGAGGCCAATTGAAAAACTTGCACAAGAAAAATATGGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212

Pfam Domains

Protein Families

adh_short

Protein Analysis

319

Amino Acids

35.8

Weight (kDa)

9.08

Isoelectric Point (pI)

25.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001251)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g25000 FvH4_4g25000 FvH4_4g25020 FvH4_4g25030 FvH4_4g25040 FvH4_4g25041 FvH4_4g25043
malus_domestica	MD13G1107300.v1.1 MD13G1107400.v1.1 MD16G1107200.v1.1 MD16G1107300.v1.1
prunus_persica	Prupe.1G239100_v2.0.a1 Prupe.1G239200_v2.0.a1
pyrus_communis	pycom13g09290 pycom16g09130
rosa_chinensis	RchiOBHm_Chr4g0432081 RchiOBHm_Chr4g0432091 RchiOBHm_Chr4g0432111 RchiOBHm_Chr4g0432131 RchiOBHm_Chr4g0432141 RchiOBHm_Chr4g0432151 RchiOBHm_Chr4g0432161 RchiOBHm_Chr4g0432171 RchiOBHm_Chr4g0432201
rosa_laevigata	RLG00000006862 RLG00000006863 RLG00000006864 RLG00000006865
rosa_multiflora	Rmu_sc0000285.1_g000006 Rmu_sc0000285.1_g000015 Rmu_sc0004965.1_g000028
rosa_roxburghii	Rroxscaffold_5G00373620 Rroxscaffold_5G00373630
rosa_rugosa	Rorug04G0254500 Rorug04G0254600 Rorug04G0254700 Rorug04G0254800 Rorug04G0254900 Rorug04G0255000 Rorug04G0255100 Rorug04G0255200
rosa_samantha	Rh4AG311900 Rh4AG312000 Rh4AG312100 Rh4AG312200 Rh4BG319100 Rh4BG319500 Rh4BG319700 Rh4CG334600 Rh4DG314700 Rh4DG314900 Rh4DG315200
rosa_wichuraiana	Rw4G027120 Rw4G027130 Rw4G027140 Rw4G027150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	718
AatII	GACGTC	1 cut(s)	867
AccB1I	GGYRCC	1 cut(s)	949
AccI	GTMKAC	1 cut(s)	710
AciI	CCGC	1 cut(s)	255
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	5 cut(s)	142, 503, 565, 898, 911
AcoI	YGGCCR	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	5
AcvI	CACGTG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	864
AdeI	CACNNNGTG	1 cut(s)	217
AfaI	GTAC	2 cut(s)	626, 893
AfiI	CCNNNNNNNGG	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	191, 240, 633, 925
AluBI	AGCT	8 cut(s)	66, 161, 244, 251, 325, 344, 454, 542
AluI	AGCT	8 cut(s)	66, 161, 244, 251, 325, 344, 454, 542
Alw26I	GTCTC	2 cut(s)	100, 755
AlwI	GGATC	5 cut(s)	142, 503, 565, 898, 911
AoxI	GGCC	3 cut(s)	318, 823, 916
ApeKI	GCWGC	6 cut(s)	158, 197, 220, 485, 611, 667
ApoI	RAATTY	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	726, 823
AsuHPI	GGTGA	3 cut(s)	203, 293, 484
AvaII	GGWCC	1 cut(s)	726
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	903
BanI	GGYRCC	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	145, 181
BbrPI	CACGTG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	6 cut(s)	170, 184, 207, 472, 598, 679
BccI	CCATC	5 cut(s)	77, 78, 158, 451, 780
BciVI	GTATCC	1 cut(s)	747
BcoDI	GTCTC	2 cut(s)	100, 755
BfaI	CTAG	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	6 cut(s)	159, 198, 221, 486, 612, 668
BlsI	GCNGC	6 cut(s)	160, 199, 222, 487, 613, 669
Bme18I	GGWCC	1 cut(s)	726
BmgT120I	GGNCC	2 cut(s)	726, 823
BmiI	GGNNCC	4 cut(s)	571, 824, 905, 951
BmrI	ACTGGG	1 cut(s)	829
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	107, 509
BsaAI	YACGTR	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	864
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	531, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	157, 824
Bse3DI	GCAATG	1 cut(s)	854
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	1 cut(s)	850
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMI	GCAATG	1 cut(s)	854
BseMII	CTCAG	4 cut(s)	94, 95, 340, 911
BseNI	ACTGG	2 cut(s)	157, 824
BseRI	GAGGAG	2 cut(s)	350, 371
BseXI	GCAGC	6 cut(s)	170, 184, 207, 472, 598, 679
BsgI	GTGCAG	1 cut(s)	854
BshFI	GGCC	3 cut(s)	320, 825, 918
BshNI	GGYRCC	1 cut(s)	949
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	2 cut(s)	100, 755
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	878
BsnI	GGCC	3 cut(s)	320, 825, 918
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	145, 181
Bsp143I	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	3 cut(s)	320, 825, 918
BspCNI	CTCAG	4 cut(s)	93, 96, 339, 910
BspHI	TCATGA	1 cut(s)	433
BspLI	GGNNCC	4 cut(s)	571, 824, 905, 951
BspPI	GGATC	5 cut(s)	142, 503, 565, 898, 911
BspT107I	GGYRCC	1 cut(s)	949
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	854
BsrI	ACTGG	2 cut(s)	157, 824
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
BssNI	GRCGYC	1 cut(s)	864
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	492
BstC8I	GCNNGC	1 cut(s)	778
BstDEI	CTNAG	4 cut(s)	80, 104, 326, 897
BstF5I	GGATG	1 cut(s)	850
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	6 cut(s)	137, 229, 297, 498, 560, 906
BstMAI	GTCTC	2 cut(s)	100, 755
BstMBI	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 620, 777
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	6 cut(s)	170, 184, 207, 472, 598, 679
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	2 cut(s)	557, 903
BstYI	RGATCY	2 cut(s)	557, 903
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	320, 825, 918
BtsCI	GGATG	1 cut(s)	850
BtsI	GCAGTG	1 cut(s)	842
BtsIMutI	CAGTG	5 cut(s)	30, 150, 334, 692, 842
Cac8I	GCNNGC	1 cut(s)	778
CciI	TCATGA	1 cut(s)	433
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	726, 823
Csp6I	GTAC	2 cut(s)	625, 892
CspCI	CAANNNNNGTGG	2 cut(s)	310, 345
CviAII	CATG	8 cut(s)	97, 138, 269, 310, 434, 478, 671, 954
CviQI	GTAC	2 cut(s)	625, 892
DdeI	CTNAG	4 cut(s)	80, 104, 326, 897
DpnI	GATC	6 cut(s)	136, 228, 296, 497, 559, 905
DpnII	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
DraIII	CACNNNGTG	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	718
DseDI	GACNNNNNNGTC	1 cut(s)	718
EaeI	YGGCCR	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	2 cut(s)	145, 181
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	726
Eco72I	CACGTG	1 cut(s)	492
EcoRI	GAATTC	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	2 cut(s)	145, 181
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	8 cut(s)	100, 141, 272, 313, 437, 481, 674, 957
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	8 cut(s)	96, 137, 268, 309, 433, 477, 670, 953
FblI	GTMKAC	1 cut(s)	710
Fnu4HI	GCNGC	6 cut(s)	159, 198, 221, 486, 612, 668
FokI	GGATG	1 cut(s)	837
FriOI	GRGCYC	2 cut(s)	145, 181
Fsp4HI	GCNGC	6 cut(s)	159, 198, 221, 486, 612, 668
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	6 cut(s)	159, 198, 221, 486, 612, 668
HaeIII	GGCC	3 cut(s)	320, 825, 918
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	864
Hin1II	CATG	8 cut(s)	100, 141, 272, 313, 437, 481, 674, 957
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	2 cut(s)	394, 711
HindII	GTYRAC	2 cut(s)	394, 711
HinfI	GANTC	2 cut(s)	118, 694
HpaI	GTTAAC	1 cut(s)	394
HphI	GGTGA	3 cut(s)	203, 293, 484
Hpy166II	GTNNAC	4 cut(s)	284, 394, 475, 711
Hpy188I	TCNGA	4 cut(s)	83, 105, 900, 908
Hpy188III	TCNNGA	3 cut(s)	298, 434, 526
Hpy8I	GTNNAC	4 cut(s)	284, 394, 475, 711
Hpy99I	CGWCG	2 cut(s)	866, 869
HpyAV	CCTTC	3 cut(s)	529, 590, 594
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	4 cut(s)	234, 491, 764, 864
HpyCH4V	TGCA	5 cut(s)	60, 200, 835, 878, 934
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 620, 777
HpyF3I	CTNAG	4 cut(s)	80, 104, 326, 897
HpySE526I	ACGT	4 cut(s)	234, 491, 764, 864
Hsp92I	GRCGYC	1 cut(s)	864
Hsp92II	CATG	8 cut(s)	100, 141, 272, 313, 437, 481, 674, 957
HspAI	GCGC	1 cut(s)	156
KspAI	GTTAAC	1 cut(s)	394
Kzo9I	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
LmnI	GCTCC	3 cut(s)	71, 451, 539
LpnPI	CCDG	7 cut(s)	138, 387, 546, 552, 704, 771, 805
Lsp1109I	GCAGC	6 cut(s)	170, 184, 207, 472, 598, 679
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	4 cut(s)	234, 491, 764, 864
MalI	GATC	6 cut(s)	136, 228, 296, 497, 559, 905
MboI	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
MboII	GAAGA	3 cut(s)	200, 541, 544
MfeI	CAATTG	1 cut(s)	920
MflI	RGATCY	2 cut(s)	557, 903
MhlI	GDGCHC	2 cut(s)	145, 181
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	7 cut(s)	5, 73, 168, 303, 604, 675, 920
MluNI	TGGCCA	1 cut(s)	320
Mox20I	TGGCCA	1 cut(s)	320
MroXI	GAANNNNTTC	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	320
MseI	TTAA	2 cut(s)	393, 468
MslI	CAYNNNNRTG	1 cut(s)	470
Msp20I	TGGCCA	1 cut(s)	320
MspA1I	CMGCKG	1 cut(s)	161
MunI	CAATTG	1 cut(s)	920
Mva1269I	GAATGC	1 cut(s)	878
MwoI	GCNNNNNNNGC	3 cut(s)	407, 620, 777
NdeII	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
NlaIII	CATG	8 cut(s)	100, 141, 272, 313, 437, 481, 674, 957
NlaIV	GGNNCC	4 cut(s)	571, 824, 905, 951
PagI	TCATGA	1 cut(s)	433
PcsI	WCGNNNNNNNCGW	1 cut(s)	761
PctI	GAATGC	1 cut(s)	878
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	118, 694
PkrI	GCNGC	6 cut(s)	160, 199, 222, 487, 613, 669
PmaCI	CACGTG	1 cut(s)	492
PmlI	CACGTG	1 cut(s)	492
Ppu21I	YACGTR	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	234
PspCI	CACGTG	1 cut(s)	492
PspN4I	GGNNCC	4 cut(s)	571, 824, 905, 951
PspPI	GGNCC	2 cut(s)	726, 823
PsrI	GAACNNNNNNTAC	2 cut(s)	728, 760
PsuI	RGATCY	2 cut(s)	557, 903
PvuII	CAGCTG	1 cut(s)	161
RsaI	GTAC	2 cut(s)	626, 893
RsaNI	GTAC	2 cut(s)	625, 892
RseI	CAYNNNNRTG	1 cut(s)	470
SalI	GTCGAC	1 cut(s)	709
SaqAI	TTAA	2 cut(s)	393, 468
SatI	GCNGC	6 cut(s)	159, 198, 221, 486, 612, 668
Sau3AI	GATC	6 cut(s)	134, 226, 294, 495, 557, 903
Sau96I	GGNCC	2 cut(s)	726, 823
SduI	GDGCHC	2 cut(s)	145, 181
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	726
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	2 cut(s)	122, 524
SmoI	CTYRAG	2 cut(s)	122, 524
Sse9I	AATT	7 cut(s)	5, 73, 168, 303, 604, 675, 920
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	4 cut(s)	237, 494, 767, 867
TaqI	TCGA	3 cut(s)	229, 246, 710
TasI	AATT	7 cut(s)	5, 73, 168, 303, 604, 675, 920
TfiI	GAWTC	2 cut(s)	118, 694
Tru1I	TTAA	2 cut(s)	393, 468
Tru9I	TTAA	2 cut(s)	393, 468
TscAI	CASTG	5 cut(s)	30, 157, 334, 692, 842
TseI	GCWGC	6 cut(s)	158, 197, 220, 485, 611, 667
TspDTI	ATGAA	5 cut(s)	37, 285, 422, 813, 871
TspRI	CASTG	5 cut(s)	30, 157, 334, 692, 842
VpaK11BI	GGWCC	1 cut(s)	726
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	710
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	865

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.