Rroxscaffold_5G00373620

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001251
Physical Location & Seq
Forward (+)
54803119 .. 54804968
1850 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373620.1

Sequence Viewer

Length: 981 bp
ATGGAATTGCCACAACTTTTCATAGTAGCAGCAACCACTATAGGCTTCATCTCTGTTTGCAAAGCTTCCATCAATTTTCTGAGATGGGTATATGTCATGTTTTTGAGACCCGCAAAGAATCTCAGAAAGTATGGATCTTGGGCCATCATCACTGGCTCCACTGATGGCATTGGCAAAGCCCTCGCCTATGAAATGGCCTCAAAGGGCCTCAACCTCGTCTTGGTGGGTCGAAACCCTTGTAAGCTCGAAGCCACCTCACATGGGATCCATGAAAAATATGGCAACCAAGTTGAAATCAAGAACGTTGTGATCGACTTGGCGAAATTGAGTGGGGAGGAGATAGCTAGAGCCATAGAGGAAGGAATCAAAGGGCTTGATGTTGGGGTTTTGGTTAACAATGCAGGGGTGGCTTACCCTTATGCTAAGTTTTTCCATGAGGTTGATTTGGAGCCGATGGAGAGCATTACAAAGGTGAACATTGAAGCAGCTACTTGGGTGTGTAGGGCTGTGATTCCAGGTATGCTCAAGAAGAAGAGAGGAGCAATTGTCAACATTGGATCTGGGTCATCTGTAATAGCTCCTTCTTATCCTCTGTACACTCTTTATGCTGCTTCCAAAGCGTACCTTGCAATGTTCTCAAGGTGCACTAGTTTGGAATACAAGCAGCAAGGAATTGACATTCAGTGTCAGATTCCCATCTTTGTGGCGACAAAGATGACAAAGTTAAAGGCATCTTCGTTCTTGATTGCATCTCCAGAGACGTATAGCAAAGCAAGCATACGATGCATTGGTTATGAGCATCTGTGTACGCCCTACTGGGGGCACTCAGTGCAGTGGTTCATAGCACGAGGTTTGCCTGATGCATTATTGAATGCGAGCATTTTCCGGTACTTCCTTGGGATGCGAAAGAGAGGTCAATTGAAGGAGTCTCGGATTAAAAAGATGCAGCAACAAGAAAATGCATTGGGAAATCGCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

326

Amino Acids

36.12

Weight (kDa)

9.5

Isoelectric Point (pI)

30.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 242 1e-38 short chain dehydrogenase
KR PF08659 48 - 211 6.2e-06 KR domain
adh_short_C2 PF13561 54 - 241 1.2e-23 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 111
AclI AACGTT 1 cut(s) 303
AclWI GGATC 4 cut(s) 142, 259, 272, 565
AdeI CACNNNGTG 1 cut(s) 829
AfaI GTAC 4 cut(s) 596, 623, 808, 890
AfiI CCNNNNNNNGG 4 cut(s) 220, 261, 818, 819
AgsI TTSAA 4 cut(s) 293, 482, 871, 922
AhlI ACTAGT 1 cut(s) 647
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 5 cut(s) 65, 244, 344, 488, 578
AluI AGCT 5 cut(s) 65, 244, 344, 488, 578
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 3 cut(s) 100, 752, 933
Alw44I GTGCAC 1 cut(s) 643
AlwI GGATC 4 cut(s) 142, 259, 272, 565
AoxI GGCC 3 cut(s) 141, 195, 205
ApaLI GTGCAC 1 cut(s) 643
ApeKI GCWGC 5 cut(s) 29, 485, 608, 664, 946
ArsI GACNNNNNNTTYG 2 cut(s) 898, 930
AspS9I GGNCC 2 cut(s) 141, 205
AsuHPI GGTGA 1 cut(s) 484
BaeGI GKGCMC 2 cut(s) 647, 825
BamHI GGATCC 1 cut(s) 264
BauI CACGAG 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 5 cut(s) 41, 497, 595, 676, 958
BccI CCATC 6 cut(s) 77, 78, 152, 158, 448, 704
BcgI CGANNNNNNTGC 2 cut(s) 163, 197
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 3 cut(s) 100, 752, 933
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 2 cut(s) 345, 648
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 5 cut(s) 30, 486, 609, 665, 947
BlsI GCNGC 5 cut(s) 31, 487, 610, 666, 948
Bme1390I CCNGG 1 cut(s) 516
BmgT120I GGNCC 2 cut(s) 141, 205
BmiI GGNNCC 3 cut(s) 157, 266, 450
BmrFI CCNGG 1 cut(s) 516
BmrI ACTGGG 1 cut(s) 826
BmsI GCATC 7 cut(s) 740, 758, 773, 808, 850, 891, 933
BmuI ACTGGG 1 cut(s) 826
BpmI CTGGAG 1 cut(s) 738
BpuEI CTTGAG 2 cut(s) 509, 622
BsaBI GATNNNNATC 1 cut(s) 695
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 895
BsaWI WCCGGW 1 cut(s) 885
BsaXI ACNNNNNCTCC 2 cut(s) 531, 561
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 261, 818, 819
Bse1I ACTGG 2 cut(s) 157, 821
Bse3DI GCAATG 1 cut(s) 636
Bse8I GATNNNNATC 1 cut(s) 695
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 895
BseGI GGATG 1 cut(s) 906
BseJI GATNNNNATC 1 cut(s) 695
BseLI CCNNNNNNNGG 4 cut(s) 220, 261, 818, 819
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 71, 136, 840
BseNI ACTGG 2 cut(s) 157, 821
BseRI GAGGAG 2 cut(s) 350, 552
BseSI GKGCMC 2 cut(s) 647, 825
BseXI GCAGC 5 cut(s) 41, 497, 595, 676, 958
BsgI GTGCAG 1 cut(s) 851
BshFI GGCC 3 cut(s) 143, 197, 207
BsiHKAI GWGCWC 1 cut(s) 647
BsiSI CCGG 1 cut(s) 886
BslI CCNNNNNNNGG 4 cut(s) 220, 261, 818, 819
BsmAI GTCTC 3 cut(s) 100, 752, 933
BsmBI CGTCTC 1 cut(s) 752
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 3 cut(s) 143, 197, 207
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 647, 825
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 4 cut(s) 134, 264, 309, 557
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 143, 197, 207
BspCNI CTCAG 3 cut(s) 72, 135, 839
BspLI GGNNCC 3 cut(s) 157, 266, 450
BspPI GGATC 4 cut(s) 142, 259, 272, 565
BspTNI GGTCTC 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 2 cut(s) 157, 821
BssECI CCNNGG 1 cut(s) 895
BssMI GATC 4 cut(s) 134, 264, 309, 557
BssSI CACGAG 1 cut(s) 846
BssT1I CCWWGG 1 cut(s) 895
Bst2BI CACGAG 1 cut(s) 846
Bst2UI CCWGG 1 cut(s) 516
Bst6I CTCTTC 1 cut(s) 527
BstAPI GCANNNNNTGC 2 cut(s) 783, 829
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 2 cut(s) 775, 877
BstDEI CTNAG 4 cut(s) 80, 122, 423, 826
BstF5I GGATG 1 cut(s) 906
BstKTI GATC 4 cut(s) 137, 267, 312, 560
BstMAI GTCTC 3 cut(s) 100, 752, 933
BstMBI GATC 4 cut(s) 134, 264, 309, 557
BstMWI GCNNNNNNNGC 6 cut(s) 407, 617, 626, 774, 783, 829
BstNI CCWGG 1 cut(s) 516
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 2 cut(s) 647, 825
BstV1I GCAGC 5 cut(s) 41, 497, 595, 676, 958
BstX2I RGATCY 3 cut(s) 134, 264, 557
BstXI CCANNNNNNTGG 1 cut(s) 703
BstYI RGATCY 3 cut(s) 134, 264, 557
BsuRI GGCC 3 cut(s) 143, 197, 207
BtsCI GGATG 1 cut(s) 906
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 5 cut(s) 150, 159, 689, 834, 839
Cac8I GCNNGC 2 cut(s) 775, 877
Cfr13I GGNCC 2 cut(s) 141, 205
Csp6I GTAC 4 cut(s) 595, 622, 807, 889
CviAII CATG 4 cut(s) 97, 260, 269, 434
CviQI GTAC 4 cut(s) 595, 622, 807, 889
DdeI CTNAG 4 cut(s) 80, 122, 423, 826
DpnI GATC 4 cut(s) 136, 266, 311, 559
DpnII GATC 4 cut(s) 134, 264, 309, 557
DraIII CACNNNGTG 1 cut(s) 829
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco130I CCWWGG 1 cut(s) 895
Eco31I GGTCTC 1 cut(s) 100
EcoO109I RGGNCCY 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 895
EcoT22I ATGCAT 3 cut(s) 788, 865, 964
ErhI CCWWGG 1 cut(s) 895
Esp3I CGTCTC 1 cut(s) 752
FaeI CATG 4 cut(s) 100, 263, 272, 437
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FatI CATG 4 cut(s) 96, 259, 268, 433
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 5 cut(s) 30, 486, 609, 665, 947
FokI GGATG 1 cut(s) 913
Fsp4HI GCNGC 5 cut(s) 30, 486, 609, 665, 947
FspBI CTAG 2 cut(s) 345, 648
GluI GCNGC 5 cut(s) 30, 486, 609, 665, 947
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 3 cut(s) 143, 197, 207
HapII CCGG 1 cut(s) 886
Hin1II CATG 4 cut(s) 100, 263, 272, 437
HincII GTYRAC 2 cut(s) 394, 550
HindII GTYRAC 2 cut(s) 394, 550
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 5 cut(s) 118, 363, 511, 691, 926
HpaI GTTAAC 1 cut(s) 394
HpaII CCGG 1 cut(s) 886
HphI GGTGA 1 cut(s) 484
Hpy166II GTNNAC 6 cut(s) 394, 475, 550, 597, 645, 807
Hpy188I TCNGA 4 cut(s) 81, 125, 690, 933
Hpy188III TCNNGA 4 cut(s) 298, 526, 742, 755
Hpy8I GTNNAC 6 cut(s) 394, 475, 550, 597, 645, 807
HpyAV CCTTC 3 cut(s) 353, 591, 916
HpyCH4IV ACGT 2 cut(s) 303, 761
HpyF10VI GCNNNNNNNGC 6 cut(s) 407, 617, 626, 774, 783, 829
HpyF3I CTNAG 4 cut(s) 80, 122, 423, 826
HpySE526I ACGT 2 cut(s) 303, 761
Hsp92II CATG 4 cut(s) 100, 263, 272, 437
KspAI GTTAAC 1 cut(s) 394
Kzo9I GATC 4 cut(s) 134, 264, 309, 557
LmnI GCTCC 4 cut(s) 161, 448, 539, 583
LpnPI CCDG 9 cut(s) 138, 387, 501, 528, 546, 768, 802, 870, 899
Lsp1109I GCAGC 5 cut(s) 41, 497, 595, 676, 958
LweI GCATC 7 cut(s) 740, 758, 773, 808, 850, 891, 933
MaeI CTAG 2 cut(s) 345, 648
MaeII ACGT 2 cut(s) 303, 761
MalI GATC 4 cut(s) 136, 266, 311, 559
MboI GATC 4 cut(s) 134, 264, 309, 557
MboII GAAGA 3 cut(s) 541, 544, 726
MfeI CAATTG 2 cut(s) 543, 917
MflI RGATCY 3 cut(s) 134, 264, 557
MhlI GDGCHC 2 cut(s) 647, 825
MluCI AATT 6 cut(s) 5, 73, 323, 543, 672, 917
MlyI GAGTC 1 cut(s) 935
Mph1103I ATGCAT 3 cut(s) 788, 865, 964
MseI TTAA 4 cut(s) 393, 725, 936, 979
MslI CAYNNNNRTG 1 cut(s) 701
MspI CCGG 1 cut(s) 886
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 2 cut(s) 543, 917
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 6 cut(s) 407, 617, 626, 774, 783, 829
NdeII GATC 4 cut(s) 134, 264, 309, 557
NlaIII CATG 4 cut(s) 100, 263, 272, 437
NlaIV GGNNCC 3 cut(s) 157, 266, 450
NsiI ATGCAT 3 cut(s) 788, 865, 964
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 877
PfeI GAWTC 4 cut(s) 118, 363, 511, 691
PkrI GCNGC 5 cut(s) 31, 487, 610, 666, 948
PleI GAGTC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 934
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 3 cut(s) 157, 266, 450
PspPI GGNCC 2 cut(s) 141, 205
PsuI RGATCY 3 cut(s) 134, 264, 557
RsaI GTAC 4 cut(s) 596, 623, 808, 890
RsaNI GTAC 4 cut(s) 595, 622, 807, 889
RseI CAYNNNNRTG 1 cut(s) 701
SaqAI TTAA 4 cut(s) 393, 725, 936, 979
SatI GCNGC 5 cut(s) 30, 486, 609, 665, 947
Sau3AI GATC 4 cut(s) 134, 264, 309, 557
Sau96I GGNCC 2 cut(s) 141, 205
SchI GAGTC 1 cut(s) 935
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 647, 825
SfaNI GCATC 7 cut(s) 740, 758, 773, 808, 850, 891, 933
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 2 cut(s) 524, 637
SmoI CTYRAG 2 cut(s) 524, 637
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 6 cut(s) 5, 73, 323, 543, 672, 917
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 345, 648
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 895
TaiI ACGT 2 cut(s) 306, 764
TaqI TCGA 3 cut(s) 229, 246, 312
TasI AATT 6 cut(s) 5, 73, 323, 543, 672, 917
TatI WGTACW 1 cut(s) 594
TfiI GAWTC 4 cut(s) 118, 363, 511, 691
Tru1I TTAA 4 cut(s) 393, 725, 936, 979
Tru9I TTAA 4 cut(s) 393, 725, 936, 979
TscAI CASTG 5 cut(s) 157, 166, 689, 834, 839
TseI GCWGC 5 cut(s) 29, 485, 608, 664, 946
TspDTI ATGAA 5 cut(s) 10, 37, 204, 285, 829
TspRI CASTG 5 cut(s) 157, 166, 689, 834, 839
VneI GTGCAC 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XspI CTAG 2 cut(s) 345, 648
Zsp2I ATGCAT 3 cut(s) 788, 865, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.