FvH4_4g25030

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001251
Physical Location & Seq
Forward (+)
26962870 .. 26964546
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25030.t1

Sequence Viewer

Length: 846 bp
ATGTTTCTGAGACCCTCCAAGAATCTCAAGGACTATGGGTCTTGGGCTATTGTCACCGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTTGAGTTAGCCTCGAAGGGTCTTAACCTTTTCCTCATCGATAGAAACCATTCAGCGCTGGAAGCTACCTGCAATGAAATACTTATAGAATCTGGTCGAAAAGTCGAGTTTAGGAGCATGGTTATCGACCTAGCCAAATCGAGTGGGGAGGAAATAGCTAATGCCATAGAGAAAGGGATAGAAGAGCTAGATGTTGGTGTTTTGGTTAATAACGCGGGCACGTCTTACCCTTACGCAAGGTATTTTCATGAGGTTGATCTGGAACTCATGGAGAATATTATAAAGGTGAACGTTGGAGGAGCAACTTGGGTGACTAAGGCAGTGCTTTCAGGAATGCTGAAGAAGAAGAAAGGAGCAATTCTCAATATTGGTTCTATGACAGCTCACCTCCCTTCTTGGCCTCTTGACACCGTTTATGCTGCAAATGCTGCAACCAAAGCTTTGGAATACAAGCAGATGGGAATTGACATTCAGTGTCAGACTCCTCTTTTCGTGGCTACGGGTTTAATACAACAAGTGAATGGACCTTCCTGGCTGTTGGCATCACCAGAGCAATTTTGCAAAGCAAGCGTTCAATGTATTAGTCATGACCAACCTCTGTGCAATCCCTACTGGTGGCACTCTGTGCAGTGGTTCATATATCGTGCAGCATTACCGGATGTGTTGTTGAATGCCATAAATTACCGGAATAACATTGAGATCAGAAAGAGAGGCCAAATGAAGGAGGCACAGATCAAGAAGATGCATCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

282

Amino Acids

31.28

Weight (kDa)

8.49

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 15 - 203 1.7e-30 short chain dehydrogenase
adh_short_C2 PF13561 20 - 172 2.8e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 371
Acc36I ACCTGC 1 cut(s) 167
AccII CGCG 1 cut(s) 305
AciI CCGC 1 cut(s) 305
AclI AACGTT 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 715
AfeI AGCGCT 1 cut(s) 147
AfiI CCNNNNNNNGG 2 cut(s) 705, 811
AgsI TTSAA 2 cut(s) 665, 760
AhdI GACNNNNNGTC 1 cut(s) 37
AjiI CACGTC 1 cut(s) 312
AjnI CCWGG 1 cut(s) 620
AluBI AGCT 5 cut(s) 155, 248, 277, 473, 530
AluI AGCT 5 cut(s) 155, 248, 277, 473, 530
Alw26I GTCTC 1 cut(s) 4
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 2 cut(s) 488, 802
ApeKI GCWGC 3 cut(s) 509, 518, 737
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 5 cut(s) 46, 388, 412, 467, 627
AvaII GGWCC 1 cut(s) 614
BaeGI GKGCMC 1 cut(s) 311
BbvI GCAGC 3 cut(s) 496, 505, 749
BccI CCATC 1 cut(s) 541
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 622
BcoDI GTCTC 1 cut(s) 4
BfaI CTAG 2 cut(s) 221, 278
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 167
BisI GCNGC 3 cut(s) 510, 519, 738
BlsI GCNGC 3 cut(s) 511, 520, 739
Bme1390I CCNGG 1 cut(s) 622
Bme18I GGWCC 1 cut(s) 614
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 614
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 641, 822
BplI GAGNNNNNCTC 4 cut(s) 86, 118, 435, 467
BpuEI CTTGAG 2 cut(s) 11, 51
Bsa29I ATCGAT 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 4
BsaWI WCCGGW 2 cut(s) 745, 774
Bsc4I CCNNNNNNNGG 2 cut(s) 705, 811
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 707
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 622
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 754
BseLI CCNNNNNNNGG 2 cut(s) 705, 811
BseMI GCAATG 1 cut(s) 169
BseNI ACTGG 1 cut(s) 707
BseRI GAGGAG 2 cut(s) 402, 564
BseSI GKGCMC 1 cut(s) 311
BseXI GCAGC 3 cut(s) 496, 505, 749
BsgI GTGCAG 2 cut(s) 737, 756
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 2 cut(s) 490, 804
BshVI ATCGAT 1 cut(s) 129
BsiSI CCGG 3 cut(s) 57, 746, 775
BslI CCNNNNNNNGG 2 cut(s) 705, 811
BsmAI GTCTC 1 cut(s) 4
BsmI GAATGC 2 cut(s) 429, 766
BsnI GGCC 2 cut(s) 490, 804
Bso31I GGTCTC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 3 cut(s) 346, 789, 822
BspACI CCGC 1 cut(s) 305
BspANI GGCC 2 cut(s) 490, 804
BspDI ATCGAT 1 cut(s) 129
BspFNI CGCG 1 cut(s) 305
BspHI TCATGA 2 cut(s) 337, 676
BspMI ACCTGC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 56
BssMI GATC 3 cut(s) 346, 789, 822
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 2 cut(s) 502, 843
Bst6I CTCTTC 1 cut(s) 267
BstAPI GCANNNNNTGC 2 cut(s) 518, 715
BstC8I GCNNGC 3 cut(s) 87, 307, 658
BstDEI CTNAG 2 cut(s) 8, 405
BstF5I GGATG 1 cut(s) 754
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 349, 792, 825
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 3 cut(s) 346, 789, 822
BstMWI GCNNNNNNNGC 6 cut(s) 152, 515, 518, 527, 657, 715
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 311
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 496, 505, 749
BstXI CCANNNNNNTGG 1 cut(s) 532
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 2 cut(s) 490, 804
BsuTUI ATCGAT 1 cut(s) 129
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 754
BtsI GCAGTG 2 cut(s) 417, 725
BtsIMutI CAGTG 3 cut(s) 417, 569, 725
BveI ACCTGC 1 cut(s) 167
Cac8I GCNNGC 3 cut(s) 87, 307, 658
CciI TCATGA 2 cut(s) 337, 676
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 614
ClaI ATCGAT 1 cut(s) 129
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 4 cut(s) 208, 338, 358, 677
DdeI CTNAG 2 cut(s) 8, 405
DpnI GATC 3 cut(s) 348, 791, 824
DpnII GATC 3 cut(s) 346, 789, 822
DraIII CACNNNGTG 1 cut(s) 715
DriI GACNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 267
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 614
Eco47III AGCGCT 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 620
EcoT22I ATGCAT 1 cut(s) 837
FaeI CATG 4 cut(s) 211, 341, 361, 680
FatI CATG 4 cut(s) 207, 337, 357, 676
FauI CCCGC 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 510, 519, 738
FokI GGATG 1 cut(s) 761
Fsp4HI GCNGC 3 cut(s) 510, 519, 738
FspBI CTAG 2 cut(s) 221, 278
GlaI GCGC 1 cut(s) 147
GluI GCNGC 3 cut(s) 510, 519, 738
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 2 cut(s) 490, 804
HapII CCGG 3 cut(s) 57, 746, 775
HhaI GCGC 1 cut(s) 148
Hin1II CATG 4 cut(s) 211, 341, 361, 680
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 1 cut(s) 528
HinfI GANTC 3 cut(s) 22, 179, 571
HpaII CCGG 3 cut(s) 57, 746, 775
HphI GGTGA 5 cut(s) 46, 388, 412, 467, 627
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 3 cut(s) 9, 570, 794
Hpy188III TCNNGA 6 cut(s) 338, 350, 420, 494, 677, 826
Hpy8I GTNNAC 1 cut(s) 379
HpyAV CCTTC 4 cut(s) 100, 492, 627, 805
HpyCH4III ACNGT 2 cut(s) 502, 843
HpyCH4IV ACGT 2 cut(s) 311, 381
HpyCH4V TGCA 8 cut(s) 162, 512, 521, 651, 693, 718, 737, 835
HpyF10VI GCNNNNNNNGC 6 cut(s) 152, 515, 518, 527, 657, 715
HpyF3I CTNAG 2 cut(s) 8, 405
HpySE526I ACGT 2 cut(s) 311, 381
Hsp92II CATG 4 cut(s) 211, 341, 361, 680
HspAI GCGC 1 cut(s) 146
Kzo9I GATC 3 cut(s) 346, 789, 822
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 3 cut(s) 204, 389, 443
Lsp1109I GCAGC 3 cut(s) 496, 505, 749
LweI GCATC 2 cut(s) 641, 822
MaeI CTAG 2 cut(s) 221, 278
MaeII ACGT 2 cut(s) 311, 381
MaeIII GTNAC 2 cut(s) 52, 400
MalI GATC 3 cut(s) 348, 791, 824
MboI GATC 3 cut(s) 346, 789, 822
MboII GAAGA 5 cut(s) 284, 442, 445, 448, 841
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 5 cut(s) 72, 447, 552, 644, 769
MlyI GAGTC 1 cut(s) 565
MmeI TCCRAC 1 cut(s) 364
Mph1103I ATGCAT 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 3 cut(s) 114, 297, 596
MspI CCGG 3 cut(s) 57, 746, 775
MspR9I CCNGG 1 cut(s) 622
Mva1269I GAATGC 2 cut(s) 429, 766
MvaI CCWGG 1 cut(s) 622
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 6 cut(s) 152, 515, 518, 527, 657, 715
NdeII GATC 3 cut(s) 346, 789, 822
NlaIII CATG 4 cut(s) 211, 341, 361, 680
NmuCI GTSAC 2 cut(s) 52, 400
NsiI ATGCAT 1 cut(s) 837
PagI TCATGA 2 cut(s) 337, 676
PciSI GCTCTTC 1 cut(s) 267
PctI GAATGC 2 cut(s) 429, 766
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 22, 179
PkrI GCNGC 3 cut(s) 511, 520, 739
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
PsiI TTATAA 1 cut(s) 371
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspPI GGNCC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 3 cut(s) 114, 297, 596
SatI GCNGC 3 cut(s) 510, 519, 738
Sau3AI GATC 3 cut(s) 346, 789, 822
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 1 cut(s) 565
ScrFI CCNGG 1 cut(s) 622
SduI GDGCHC 1 cut(s) 311
SfaNI GCATC 2 cut(s) 641, 822
SinI GGWCC 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 26, 66
SmoI CTYRAG 2 cut(s) 26, 66
Sse9I AATT 5 cut(s) 72, 447, 552, 644, 769
SsiI CCGC 1 cut(s) 305
SspI AATATT 2 cut(s) 367, 457
SspMI CTAG 2 cut(s) 221, 278
StyD4I CCNGG 1 cut(s) 620
TaaI ACNGT 2 cut(s) 502, 843
TaiI ACGT 2 cut(s) 314, 384
TaqI TCGA 6 cut(s) 104, 129, 187, 195, 216, 230
TasI AATT 5 cut(s) 72, 447, 552, 644, 769
TfiI GAWTC 2 cut(s) 22, 179
Tru1I TTAA 3 cut(s) 114, 297, 596
Tru9I TTAA 3 cut(s) 114, 297, 596
TscAI CASTG 3 cut(s) 417, 569, 725
TseFI GTSAC 2 cut(s) 52, 400
TseI GCWGC 3 cut(s) 509, 518, 737
Tsp45I GTSAC 2 cut(s) 52, 400
TspDTI ATGAA 4 cut(s) 180, 326, 715, 824
TspRI CASTG 3 cut(s) 417, 569, 725
VpaK11BI GGWCC 1 cut(s) 614
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 2 cut(s) 221, 278
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.