RLG00000006862

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001251
Physical Location & Seq
Reverse (-)
11161739 .. 11171747
10009 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006862

Sequence Viewer

Length: 1044 bp
ATGGAATTACAAGAATTTTTCATTGTCCTAGCAATCACTATGGGGTTGGTATCTGTTTGTATATCTTTGTTCAATTTTGCGAGATGGATATGGGTCATGTTTCTGAGACCTTCAAAGAAACTCAAGGAGTACGGATCATGGGCTATTATCACTGTCTCCGCTCAAGGAATTGGGAAAGCCCTTGCCTTTGAAATGGCTTCAAAGGGCCTCAACATTTTCTTGGTTGATAAAAACCATTCAACCCTTGAAGCTACCTCCAATGAATTAAGTGAAAAACATGGTTGGAGAGTTGAGATCAAGAGCATTGTGATGGACTTGGCCAAATTGAGTGGTAAGGAGATAGCTAAAACCATAGAGGAAGGAACGAAAGGGCTCGATGTTGACATTTTGGTTAATAATGCAGGGATGTGTTACCCTTATCCAAGGTTTTTTCATGAGGTTGATTCAGAACTCATGGAGAACCTTATGAAGGTGAACATGGAAGCAGCAACTTGGATGACTAAGGCTTACCTAAAACTGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCATGGAATTGACATTCAGTGTCAGGTTCCTGTGTTCGTCGCGACAAGGCTTGCGAAGATAAAGGAATCTTCCTTGTTCATCCCATCACCTGAAACGTTTAGCAAATCAAGCATTCGGTGGATTGGTTATGACAATGTTTGTACGCCCTACTGGAGCCACTCTTTGATGGGATTTGTAGCCCGTGCATTGCCCCATGCTCTCCTGACCGCCACCATTTTTCGTATAAACGATGGTGATGACCAATCTAGTCATAGATTGGAATTTAGAAAGAGTCGCCAGATTCTAGCTGCATCTTTGAGTTATAACCAAGGTGGTCCGCCAATTAGATCCGCTCTCAAGAATTATGAAGCAGGACCCAAAATCAGCCCTCCATTTCAGCAAAACGTTGTCGTCTATCCCCAACTCGCCAAAGGGAAGCTCGATCTGGAGGAACCAAATCTTGTTGAAATTCTTAGCCTTGACGTCGCCGATCTTGTTAAAGCCGGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

348

Amino Acids

38.98

Weight (kDa)

8.15

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 47 - 174 1.7e-20 short chain dehydrogenase
adh_short_C2 PF13561 54 - 175 5.3e-11 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AatII GACGTC 1 cut(s) 1017
AccBSI CCGCTC 2 cut(s) 161, 884
AccII CGCG 1 cut(s) 593
AciI CCGC 4 cut(s) 159, 759, 869, 882
AclI AACGTT 2 cut(s) 647, 936
AclWI GGATC 2 cut(s) 142, 873
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 3 cut(s) 14, 812, 999
AcyI GRCGYC 1 cut(s) 1014
AfaI GTAC 2 cut(s) 131, 694
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 7 cut(s) 73, 114, 191, 201, 240, 248, 998
AluBI AGCT 4 cut(s) 251, 344, 839, 970
AluI AGCT 4 cut(s) 251, 344, 839, 970
Alw26I GTCTC 2 cut(s) 100, 160
AlwI GGATC 2 cut(s) 142, 873
AoxI GGCC 2 cut(s) 205, 318
ApeKI GCWGC 3 cut(s) 485, 550, 839
ApoI RAATTY 3 cut(s) 14, 812, 999
AspS9I GGNCC 3 cut(s) 205, 866, 905
AsuHPI GGTGA 3 cut(s) 484, 630, 797
AvaII GGWCC 2 cut(s) 866, 905
BalI TGGCCA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 375
BbvI GCAGC 3 cut(s) 497, 562, 826
BccI CCATC 5 cut(s) 78, 304, 643, 712, 776
BcoDI GTCTC 2 cut(s) 100, 160
BfaI CTAG 3 cut(s) 29, 798, 836
BisI GCNGC 3 cut(s) 486, 551, 840
BlsI GCNGC 3 cut(s) 487, 552, 841
Bme18I GGWCC 2 cut(s) 866, 905
BmgT120I GGNCC 3 cut(s) 205, 866, 905
BmiI GGNNCC 4 cut(s) 579, 707, 907, 984
BmsI GCATC 2 cut(s) 518, 851
BpmI CTGGAG 2 cut(s) 724, 998
BpuEI CTTGAG 4 cut(s) 107, 147, 508, 872
BsaHI GRCGYC 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 422, 859
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse118I RCCGGY 1 cut(s) 1034
Bse1I ACTGG 1 cut(s) 707
Bse3DI GCAATG 1 cut(s) 737
BseDI CCNNGG 2 cut(s) 422, 859
BseGI GGATG 3 cut(s) 411, 501, 630
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 737
BseMII CTCAG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 707
BseXI GCAGC 3 cut(s) 497, 562, 826
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 2 cut(s) 207, 320
BsiSI CCGG 1 cut(s) 1035
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 2 cut(s) 100, 160
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 2 cut(s) 207, 320
Bso31I GGTCTC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 5 cut(s) 134, 294, 878, 973, 1021
Bsp68I TCGCGA 1 cut(s) 593
BspACI CCGC 4 cut(s) 159, 759, 869, 882
BspANI GGCC 2 cut(s) 207, 320
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 593
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 579, 707, 907, 984
BspPI GGATC 2 cut(s) 142, 873
BspTNI GGTCTC 1 cut(s) 100
BsrBI CCGCTC 2 cut(s) 161, 884
BsrDI GCAATG 1 cut(s) 737
BsrFI RCCGGY 1 cut(s) 1034
BsrI ACTGG 1 cut(s) 707
BssAI RCCGGY 1 cut(s) 1034
BssECI CCNNGG 2 cut(s) 422, 859
BssMI GATC 5 cut(s) 134, 294, 878, 973, 1021
BssNI GRCGYC 1 cut(s) 1014
BssT1I CCWWGG 2 cut(s) 422, 859
Bst4CI ACNGT 2 cut(s) 154, 519
BstACI GRCGYC 1 cut(s) 1014
BstC8I GCNNGC 2 cut(s) 603, 1036
BstDEI CTNAG 4 cut(s) 104, 501, 1004, 1041
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 411, 501, 630
BstFNI CGCG 1 cut(s) 593
BstKTI GATC 5 cut(s) 137, 297, 881, 976, 1024
BstMAI GTCTC 2 cut(s) 100, 160
BstMBI GATC 5 cut(s) 134, 294, 878, 973, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 660
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 3 cut(s) 497, 562, 826
BstX2I RGATCY 1 cut(s) 878
BstYI RGATCY 1 cut(s) 878
BsuRI GGCC 2 cut(s) 207, 320
BtsCI GGATG 3 cut(s) 411, 501, 630
BtsIMutI CAGTG 2 cut(s) 150, 575
BtuMI TCGCGA 1 cut(s) 593
Cac8I GCNNGC 2 cut(s) 603, 1036
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 1034
Cfr13I GGNCC 3 cut(s) 205, 866, 905
Csp6I GTAC 2 cut(s) 130, 693
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 8 cut(s) 97, 138, 278, 434, 454, 478, 554, 746
CviQI GTAC 2 cut(s) 130, 693
DdeI CTNAG 4 cut(s) 104, 501, 1004, 1041
DpnI GATC 5 cut(s) 136, 296, 880, 975, 1023
DpnII GATC 5 cut(s) 134, 294, 878, 973, 1021
EaeI YGGCCR 1 cut(s) 318
EciI GGCGGA 1 cut(s) 858
Eco130I CCWWGG 2 cut(s) 422, 859
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 866, 905
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO109I RGGNCCY 2 cut(s) 205, 905
EcoT14I CCWWGG 2 cut(s) 422, 859
EcoT22I ATGCAT 1 cut(s) 533
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 422, 859
FaeI CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 557, 749
FatI CATG 8 cut(s) 96, 137, 277, 433, 453, 477, 553, 745
Fnu4HI GCNGC 3 cut(s) 486, 551, 840
FokI GGATG 3 cut(s) 418, 508, 617
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 3 cut(s) 486, 551, 840
FspBI CTAG 3 cut(s) 29, 798, 836
GluI GCNGC 3 cut(s) 486, 551, 840
GsuI CTGGAG 2 cut(s) 724, 998
HaeIII GGCC 2 cut(s) 207, 320
HapII CCGG 1 cut(s) 1035
Hin1I GRCGYC 1 cut(s) 1014
Hin1II CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 557, 749
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 4 cut(s) 443, 617, 823, 832
HpaII CCGG 1 cut(s) 1035
HphI GGTGA 3 cut(s) 484, 630, 797
Hpy166II GTNNAC 2 cut(s) 382, 475
Hpy188I TCNGA 2 cut(s) 105, 448
Hpy188III TCNNGA 7 cut(s) 298, 434, 525, 592, 754, 889, 977
Hpy8I GTNNAC 2 cut(s) 382, 475
Hpy99I CGWCG 2 cut(s) 593, 1019
HpyAV CCTTC 3 cut(s) 120, 353, 463
HpyCH4III ACNGT 2 cut(s) 154, 519
HpyCH4IV ACGT 3 cut(s) 647, 936, 1014
HpyCH4V TGCA 4 cut(s) 401, 531, 737, 842
HpyF10VI GCNNNNNNNGC 1 cut(s) 660
HpyF3I CTNAG 4 cut(s) 104, 501, 1004, 1041
HpySE526I ACGT 3 cut(s) 647, 936, 1014
Hsp92I GRCGYC 1 cut(s) 1014
Hsp92II CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 557, 749
KroI GCCGGC 1 cut(s) 1034
KroNI GCCGGC 1 cut(s) 1036
Kzo9I GATC 5 cut(s) 134, 294, 878, 973, 1021
LmnI GCTCC 1 cut(s) 705
LpnPI CCDG 9 cut(s) 387, 560, 594, 654, 688, 767, 842, 888, 962
Lsp1109I GCAGC 3 cut(s) 497, 562, 826
LweI GCATC 2 cut(s) 518, 851
MaeI CTAG 3 cut(s) 29, 798, 836
MaeII ACGT 3 cut(s) 647, 936, 1014
MaeIII GTNAC 1 cut(s) 410
MalI GATC 5 cut(s) 136, 296, 880, 975, 1023
MbiI CCGCTC 2 cut(s) 161, 884
MboI GATC 5 cut(s) 134, 294, 878, 973, 1021
MboII GAAGA 2 cut(s) 612, 619
MflI RGATCY 1 cut(s) 878
MhlI GDGCHC 1 cut(s) 375
MlsI TGGCCA 1 cut(s) 320
MluNI TGGCCA 1 cut(s) 320
MlyI GAGTC 1 cut(s) 832
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 6 cut(s) 218, 265, 349, 430, 930, 973
Mox20I TGGCCA 1 cut(s) 320
Mph1103I ATGCAT 1 cut(s) 533
MroNI GCCGGC 1 cut(s) 1034
MscI TGGCCA 1 cut(s) 320
MseI TTAA 3 cut(s) 266, 393, 1029
MslI CAYNNNNRTG 1 cut(s) 308
Msp20I TGGCCA 1 cut(s) 320
MspI CCGG 1 cut(s) 1035
Mva1269I GAATGC 1 cut(s) 663
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 1 cut(s) 660
NaeI GCCGGC 1 cut(s) 1036
NdeII GATC 5 cut(s) 134, 294, 878, 973, 1021
NgoMIV GCCGGC 1 cut(s) 1034
NlaIII CATG 8 cut(s) 100, 141, 281, 437, 457, 481, 557, 749
NlaIV GGNNCC 4 cut(s) 579, 707, 907, 984
NruI TCGCGA 1 cut(s) 593
NsiI ATGCAT 1 cut(s) 533
PagI TCATGA 1 cut(s) 433
PctI GAATGC 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 1036
PfeI GAWTC 3 cut(s) 443, 617, 832
PkrI GCNGC 3 cut(s) 487, 552, 841
PleI GAGTC 1 cut(s) 831
PpsI GAGTC 1 cut(s) 831
PpuMI RGGWCCY 1 cut(s) 905
PsiI TTATAA 1 cut(s) 855
Psp1406I AACGTT 2 cut(s) 647, 936
Psp5II RGGWCCY 1 cut(s) 905
PspN4I GGNNCC 4 cut(s) 579, 707, 907, 984
PspPI GGNCC 3 cut(s) 205, 866, 905
PspPPI RGGWCCY 1 cut(s) 905
PsuI RGATCY 1 cut(s) 878
RruI TCGCGA 1 cut(s) 593
RsaI GTAC 2 cut(s) 131, 694
RsaNI GTAC 2 cut(s) 130, 693
RseI CAYNNNNRTG 1 cut(s) 308
SaqAI TTAA 3 cut(s) 266, 393, 1029
SatI GCNGC 3 cut(s) 486, 551, 840
Sau3AI GATC 5 cut(s) 134, 294, 878, 973, 1021
Sau96I GGNCC 3 cut(s) 205, 866, 905
SchI GAGTC 1 cut(s) 832
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 2 cut(s) 518, 851
SinI GGWCC 2 cut(s) 866, 905
SmiMI CAYNNNNRTG 1 cut(s) 308
SmlI CTYRAG 4 cut(s) 122, 162, 523, 887
SmoI CTYRAG 4 cut(s) 122, 162, 523, 887
SsiI CCGC 4 cut(s) 159, 759, 869, 882
SspMI CTAG 3 cut(s) 29, 798, 836
StyI CCWWGG 2 cut(s) 422, 859
TaaI ACNGT 2 cut(s) 154, 519
TaiI ACGT 3 cut(s) 650, 939, 1017
TaqI TCGA 2 cut(s) 375, 972
TfiI GAWTC 3 cut(s) 443, 617, 832
Tru1I TTAA 3 cut(s) 266, 393, 1029
Tru9I TTAA 3 cut(s) 266, 393, 1029
TscAI CASTG 2 cut(s) 157, 575
TseI GCWGC 3 cut(s) 485, 550, 839
TspDTI ATGAA 6 cut(s) 10, 276, 422, 482, 619, 912
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 157, 575
VpaK11BI GGWCC 2 cut(s) 866, 905
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 3 cut(s) 14, 812, 999
XspI CTAG 3 cut(s) 29, 798, 836
ZraI GACGTC 1 cut(s) 1015
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.