MD16G1107300.v1.1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
7520347 .. 7521383
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1107300.v1.1.491

Sequence Viewer

Length: 342 bp
ATGGCTTCAAAGTGTCTTAACTTAGTTTTGCTTGATCGAAACACTTCAAAGCTTGAAGCTAGCTCCAATGAAATACGTGAAAAATATGGTGGAAAATTGGCATTAAGAATATTCATGGACTTGGCAAAATTTGGTAAGTTCATCCATGATGTGGATGATTGGGAGTTGATGGAGATCCAAGTACGCTCAAGAAGAAGATGGGAGCAATTATCAATCTTGGTTCTGCCTCTCATGCCGTACCTTTCGAAGTTGTCAAGAAGCATTAGCTTGAAATACAAGCAGCATGGAATTGACATTCAGTGCCAGATTCCTTCTTCCCACCACCAGATATATACAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.2

Weight (kDa)

9.39

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 128
AfaI GTAC 2 cut(s) 183, 239
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 4 cut(s) 9, 48, 56, 271
AluBI AGCT 4 cut(s) 52, 59, 63, 267
AluI AGCT 4 cut(s) 52, 59, 63, 267
AlwI GGATC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 43
AsuII TTCGAA 1 cut(s) 245
AsuNHI GCTAGC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 163, 192
BceAI ACGGC 1 cut(s) 220
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 281
BlsI GCNGC 1 cut(s) 282
BmtI GCTAGC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 77
BsaBI GATNNNNATC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 173
BseGI GGATG 2 cut(s) 141, 160
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 2 cut(s) 34, 174
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 245
BssMI GATC 2 cut(s) 34, 174
BstBAI YACGTR 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 141, 160
BstKTI GATC 2 cut(s) 37, 177
BstMBI GATC 2 cut(s) 34, 174
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 174
BstYI RGATCY 1 cut(s) 174
BtsCI GGATG 2 cut(s) 141, 160
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 182, 238
CviAII CATG 4 cut(s) 115, 146, 232, 284
CviJI RGCY 5 cut(s) 5, 52, 59, 63, 267
CviKI_1 RGCY 5 cut(s) 5, 52, 59, 63, 267
CviQI GTAC 2 cut(s) 182, 238
DdeI CTNAG 1 cut(s) 22
DpnI GATC 2 cut(s) 36, 176
DpnII GATC 2 cut(s) 34, 174
FaeI CATG 4 cut(s) 118, 149, 235, 287
FaiI YATR 8 cut(s) 87, 116, 147, 233, 285, 331, 333, 340
FatI CATG 4 cut(s) 114, 145, 231, 283
Fnu4HI GCNGC 1 cut(s) 281
FokI GGATG 2 cut(s) 128, 167
Fsp4HI GCNGC 1 cut(s) 281
FspBI CTAG 1 cut(s) 60
GluI GCNGC 1 cut(s) 281
Hin1II CATG 4 cut(s) 118, 149, 235, 287
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 189, 255
HpyAV CCTTC 1 cut(s) 321
HpyCH4IV ACGT 1 cut(s) 76
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 4 cut(s) 118, 149, 235, 287
Kzo9I GATC 2 cut(s) 34, 174
LmnI GCTCC 2 cut(s) 68, 202
LpnPI CCDG 2 cut(s) 317, 338
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 76
MalI GATC 2 cut(s) 36, 176
MboI GATC 2 cut(s) 34, 174
MboII GAAGA 3 cut(s) 204, 207, 306
MflI RGATCY 1 cut(s) 174
MluCI AATT 4 cut(s) 95, 128, 206, 288
MnlI CCTC 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 18, 104
MwoI GCNNNNNNNGC 1 cut(s) 232
NdeII GATC 2 cut(s) 34, 174
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 4 cut(s) 118, 149, 235, 287
NspV TTCGAA 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 307
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 77
PsuI RGATCY 1 cut(s) 174
RsaI GTAC 2 cut(s) 183, 239
RsaNI GTAC 2 cut(s) 182, 238
SaqAI TTAA 2 cut(s) 18, 104
SatI GCNGC 1 cut(s) 281
Sau3AI GATC 2 cut(s) 34, 174
SetI ASST 6 cut(s) 54, 61, 65, 79, 243, 269
SfuI TTCGAA 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 4 cut(s) 95, 128, 206, 288
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 60
TaiI ACGT 1 cut(s) 79
TaqI TCGA 2 cut(s) 37, 245
TasI AATT 4 cut(s) 95, 128, 206, 288
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 18, 104
Tru9I TTAA 2 cut(s) 18, 104
TscAI CASTG 1 cut(s) 305
TseI GCWGC 1 cut(s) 280
TspDTI ATGAA 3 cut(s) 84, 103, 130
TspRI CASTG 1 cut(s) 305
Van91I CCANNNNNTGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 128
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.