Rorug04G0255200

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001251
Physical Location & Seq
Reverse (-)
42804191 .. 42805187
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0255200.1

Sequence Viewer

Length: 888 bp
ATGGCTGTCTTGATTACCAAGCCTGCGTTTAAGCAATTTGATGTCGTTTCTAACCATTCAGACCACCACTTCAGCTGCAGAAGGACCTTCCCGGACACTATCTACGTGCGGGTGTACGATACACGCATTGACCTCCTCAGGGCTGTGATTATCGGAGCTGCCGGCACACCTTACCACGATGGTCTCTTTTTCTTCGACATTAAATTCCCACCTGACTACCCAAAGCACCCCCCAAAGGTCCATTACCGGTCACATGGGTTATGTCTCAACCCAAACCTCGGCGCTGGTGGACACGTCTGCTTAAGCATTCTCAATACATGGATTGGCTGGAGATATGAGCGGTGGAACCCAGCTCAGTCGACAATCCTCCAAGTTTTGGTGTCTATACAGGCGCTCGTTCTCAACGAGAAGCCCTATTATAACGAACCGGGTAAGAGTTTCTTTGCCCTGAACATTCACTCCCAAGTTTACAACGAAGTTGTGTTTATATCAACATGCAAGTCCACCTTGTATTTGCTCCGAAATCCACCAGAGAATTTTGAGGCTTTCACTATTGAGCATTTTCGTGGGAGAGCAAGCGGTATAATGAGAGCGTGCAGCACTTATGCAGGTGGGCGCGTGGCAGTCGGTAGCATCAATGAGAATGAGGCTGCATGCCCACCTTTGTATTCTGTTTCCAAGAGGTTCAAGGGGTCGATGAAGCAGCTGTACCCACTACTCGGGGAGGCTTTTAGAAGGATTGGGGTTTCTCCTCAACATTGGGTAGAGGAGGACTTGATGGTGGAGAGGAGTTTGATGATGACGACTTCGGTGGAGAAGAAAGCTGTGCTACCCTTTTCGTGGCTGTTTCGTTTATTACATTGTTTACCCTGGGTGCGCCGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

295

Amino Acids

33.78

Weight (kDa)

9.3

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 30 - 143 2.9e-23 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AarI CACCTGC 1 cut(s) 599
Acc36I ACCTGC 1 cut(s) 599
AccB7I CCANNNNNTGG 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 359
AccII CGCG 1 cut(s) 618
AciI CCGC 4 cut(s) 109, 340, 579, 880
AcsI RAATTY 2 cut(s) 203, 535
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 2 cut(s) 116, 710
AfiI CCNNNNNNNGG 6 cut(s) 139, 235, 278, 376, 719, 840
AflII CTTAAG 1 cut(s) 301
AflIII ACRYGT 1 cut(s) 292
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 688
AjiI CACGTC 1 cut(s) 295
AjnI CCWGG 1 cut(s) 869
AloI GAACNNNNNNTCC 2 cut(s) 443, 475
AluBI AGCT 5 cut(s) 75, 158, 353, 706, 824
AluI AGCT 5 cut(s) 75, 158, 353, 706, 824
Alw26I GTCTC 2 cut(s) 188, 269
Ama87I CYCGRG 1 cut(s) 719
ApeKI GCWGC 5 cut(s) 75, 158, 597, 650, 703
ApoI RAATTY 2 cut(s) 203, 535
AsiGI ACCGGT 1 cut(s) 246
AspLEI GCGC 4 cut(s) 284, 394, 618, 879
AspS9I GGNCC 2 cut(s) 84, 238
AsuC2I CCSGG 2 cut(s) 92, 429
AvaI CYCGRG 1 cut(s) 719
AvaII GGWCC 2 cut(s) 84, 238
AxyI CCTNAGG 1 cut(s) 137
BarI GAAGNNNNNNTAC 2 cut(s) 692, 724
BbvI GCAGC 5 cut(s) 62, 145, 609, 637, 715
BccI CCATC 2 cut(s) 173, 772
BciT130I CCWGG 1 cut(s) 871
BcnI CCSGG 2 cut(s) 92, 429
BcoDI GTCTC 2 cut(s) 188, 269
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 2 cut(s) 285, 395
BfrI CTTAAG 1 cut(s) 301
BfuAI ACCTGC 1 cut(s) 599
BisI GCNGC 6 cut(s) 76, 159, 598, 651, 704, 880
BlsI GCNGC 6 cut(s) 77, 160, 599, 652, 705, 881
Bme1390I CCNGG 3 cut(s) 92, 429, 871
Bme18I GGWCC 2 cut(s) 84, 238
BmeT110I CYCGRG 1 cut(s) 719
BmgBI CACGTC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 84, 238
BmiI GGNNCC 1 cut(s) 347
BmrFI CCNGG 3 cut(s) 92, 429, 871
BmsI GCATC 1 cut(s) 642
BpmI CTGGAG 1 cut(s) 349
BpuMI CCSGG 2 cut(s) 92, 429
BsaAI YACGTR 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 3 cut(s) 277, 869, 870
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 235, 278, 376, 719, 840
Bse118I RCCGGY 2 cut(s) 161, 246
Bse21I CCTNAGG 1 cut(s) 137
BseBI CCWGG 1 cut(s) 871
BseDI CCNNGG 3 cut(s) 277, 869, 870
BseLI CCNNNNNNNGG 6 cut(s) 139, 235, 278, 376, 719, 840
BseMII CTCAG 2 cut(s) 151, 368
BseRI GAGGAG 4 cut(s) 125, 741, 782, 802
BseXI GCAGC 5 cut(s) 62, 145, 609, 637, 715
BseYI CCCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 616
Bsh1236I CGCG 1 cut(s) 618
BshTI ACCGGT 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 719
BsiSI CCGG 4 cut(s) 92, 162, 247, 428
BslI CCNNNNNNNGG 6 cut(s) 139, 235, 278, 376, 719, 840
BsmAI GTCTC 2 cut(s) 188, 269
BsmI GAATGC 1 cut(s) 306
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 1 cut(s) 719
BspACI CCGC 4 cut(s) 109, 340, 579, 880
BspCNI CTCAG 2 cut(s) 150, 367
BspFNI CGCG 1 cut(s) 618
BspLI GGNNCC 1 cut(s) 347
BspMAI CTGCAG 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 599
BspTI CTTAAG 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 188
BsrBI CCGCTC 1 cut(s) 340
BsrFI RCCGGY 2 cut(s) 161, 246
BssAI RCCGGY 2 cut(s) 161, 246
BssECI CCNNGG 3 cut(s) 277, 869, 870
Bst2UI CCWGG 1 cut(s) 871
BstAFI CTTAAG 1 cut(s) 301
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 5 cut(s) 24, 163, 577, 595, 655
BstDEI CTNAG 2 cut(s) 137, 354
BstFNI CGCG 1 cut(s) 618
BstH2I RGCGCY 2 cut(s) 285, 395
BstHHI GCGC 4 cut(s) 284, 394, 618, 879
BstMAI GTCTC 2 cut(s) 188, 269
BstNI CCWGG 1 cut(s) 871
BstNSI RCATGY 2 cut(s) 498, 657
BstSCI CCNGG 3 cut(s) 90, 427, 869
BstSFI CTRYAG 1 cut(s) 76
BstUI CGCG 1 cut(s) 618
BstV1I GCAGC 5 cut(s) 62, 145, 609, 637, 715
Bsu36I CCTNAGG 1 cut(s) 137
BtrI CACGTC 1 cut(s) 295
BveI ACCTGC 1 cut(s) 599
Cac8I GCNNGC 5 cut(s) 24, 163, 577, 595, 655
CfoI GCGC 4 cut(s) 284, 394, 618, 879
Cfr10I RCCGGY 2 cut(s) 161, 246
Cfr13I GGNCC 2 cut(s) 84, 238
Csp6I GTAC 2 cut(s) 115, 709
CspAI ACCGGT 1 cut(s) 246
CviAII CATG 4 cut(s) 254, 318, 495, 654
CviQI GTAC 2 cut(s) 115, 709
DdeI CTNAG 2 cut(s) 137, 354
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 84, 238
Eco57I CTGAAG 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 869
FaeI CATG 4 cut(s) 257, 321, 498, 657
FalI AAGNNNNNCTT 4 cut(s) 425, 457, 491, 523
FatI CATG 4 cut(s) 253, 317, 494, 653
FauI CCCGC 1 cut(s) 102
FblI GTMKAC 1 cut(s) 359
Fnu4HI GCNGC 6 cut(s) 76, 159, 598, 651, 704, 880
Fsp4HI GCNGC 6 cut(s) 76, 159, 598, 651, 704, 880
GlaI GCGC 4 cut(s) 283, 393, 617, 878
GluI GCNGC 6 cut(s) 76, 159, 598, 651, 704, 880
GsaI CCCAGC 1 cut(s) 353
GsuI CTGGAG 1 cut(s) 349
HaeII RGCGCY 2 cut(s) 285, 395
HapII CCGG 4 cut(s) 92, 162, 247, 428
HhaI GCGC 4 cut(s) 284, 394, 618, 879
Hin1II CATG 4 cut(s) 257, 321, 498, 657
Hin6I GCGC 4 cut(s) 282, 392, 616, 877
HinP1I GCGC 4 cut(s) 282, 392, 616, 877
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HpaII CCGG 4 cut(s) 92, 162, 247, 428
Hpy166II GTNNAC 6 cut(s) 115, 290, 360, 469, 504, 866
Hpy188I TCNGA 3 cut(s) 61, 155, 521
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 6 cut(s) 115, 290, 360, 469, 504, 866
HpyAV CCTTC 3 cut(s) 75, 97, 729
HpyCH4IV ACGT 2 cut(s) 105, 294
HpyCH4V TGCA 5 cut(s) 78, 498, 597, 608, 653
HpyF3I CTNAG 2 cut(s) 137, 354
HpySE526I ACGT 2 cut(s) 105, 294
Hsp92II CATG 4 cut(s) 257, 321, 498, 657
HspAI GCGC 4 cut(s) 282, 392, 616, 877
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 155, 522
Lsp1109I GCAGC 5 cut(s) 62, 145, 609, 637, 715
LweI GCATC 1 cut(s) 642
MaeII ACGT 2 cut(s) 105, 294
MaeIII GTNAC 1 cut(s) 249
MbiI CCGCTC 1 cut(s) 340
MboII GAAGA 2 cut(s) 184, 829
MluCI AATT 3 cut(s) 35, 203, 535
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 3 cut(s) 30, 201, 302
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 75, 706
MspCI CTTAAG 1 cut(s) 301
MspI CCGG 4 cut(s) 92, 162, 247, 428
MspR9I CCNGG 3 cut(s) 92, 429, 871
Mva1269I GAATGC 1 cut(s) 306
MvaI CCWGG 1 cut(s) 871
MvnI CGCG 1 cut(s) 618
NaeI GCCGGC 1 cut(s) 163
NciI CCSGG 2 cut(s) 92, 429
NgoMIV GCCGGC 1 cut(s) 161
NlaIII CATG 4 cut(s) 257, 321, 498, 657
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 249
NspI RCATGY 2 cut(s) 498, 657
PaeI GCATGC 1 cut(s) 657
PaqCI CACCTGC 1 cut(s) 599
PasI CCCWGGG 1 cut(s) 870
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 1 cut(s) 306
PdiI GCCGGC 1 cut(s) 163
PflMI CCANNNNNTGG 1 cut(s) 376
PfoI TCCNGGA 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 6 cut(s) 77, 160, 599, 652, 705, 881
Ppu21I YACGTR 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 84
PsiI TTATAA 1 cut(s) 420
Psp5II RGGWCCY 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 869
PspFI CCCAGC 1 cut(s) 349
PspGI CCWGG 1 cut(s) 869
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 2 cut(s) 84, 238
PspPPI RGGWCCY 1 cut(s) 84
PstI CTGCAG 1 cut(s) 80
PvuII CAGCTG 2 cut(s) 75, 706
RsaI GTAC 2 cut(s) 116, 710
RsaNI GTAC 2 cut(s) 115, 709
RseI CAYNNNNRTG 1 cut(s) 564
SalI GTCGAC 1 cut(s) 358
SaqAI TTAA 3 cut(s) 30, 201, 302
SatI GCNGC 6 cut(s) 76, 159, 598, 651, 704, 880
Sau96I GGNCC 2 cut(s) 84, 238
ScrFI CCNGG 3 cut(s) 92, 429, 871
SfaNI GCATC 1 cut(s) 642
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 2 cut(s) 84, 238
SmiMI CAYNNNNRTG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
SphI GCATGC 1 cut(s) 657
Sse9I AATT 3 cut(s) 35, 203, 535
SsiI CCGC 4 cut(s) 109, 340, 579, 880
StyD4I CCNGG 3 cut(s) 90, 427, 869
TaiI ACGT 2 cut(s) 108, 297
TaqI TCGA 3 cut(s) 195, 359, 695
TasI AATT 3 cut(s) 35, 203, 535
TauI GCSGC 1 cut(s) 882
Tru1I TTAA 3 cut(s) 30, 201, 302
Tru9I TTAA 3 cut(s) 30, 201, 302
TseFI GTSAC 1 cut(s) 249
TseI GCWGC 5 cut(s) 75, 158, 597, 650, 703
Tsp45I GTSAC 1 cut(s) 249
TspDTI ATGAA 1 cut(s) 713
Van91I CCANNNNNTGG 1 cut(s) 376
Vha464I CTTAAG 1 cut(s) 301
VpaK11BI GGWCC 2 cut(s) 84, 238
XapI RAATTY 2 cut(s) 203, 535
XceI RCATGY 2 cut(s) 498, 657
XmiI GTMKAC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.