Rw4G027130

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001251
Physical Location & Seq
Forward (+)
53418585 .. 53424280
5696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027130.1

Sequence Viewer

Length: 978 bp
ATGGCAATGGAATTGCAAGAAGGTTTCATTGTAGCAGCAAGTTGCATAGGCTTCATCTCTGTTTGTAAAGCTTTCATCAACTTTGTGAGATGGGTATGGGTCATGTTTCTGAGATCCCCAAAGAATCTCAAGGACTATGGCTCTTGGGCTATCGTCACCGGCTCTGCTCAAGGAATTGGCAAAGTGCTTGCCTTGGAGTTGGCTTCGAAGGGTCTAAACCTTGTCCTGATTGATAAAAACCATTCAGCGCTCGAAGCTACCTCCAATGAAATACATGAAGAATTTGGCGGAAGAGTCGAGATTAAGAACATGGTGATCGACTTGGCCAAATTGAGCGGCGAGGAAATAGCTAATGCCATAGAGGAAGGGATAAGAGGACTAGATGTTGGTGTTTTGATTAACAATGCAGGGATAGGTTACCCTTATGCCAGGTTTTTTCATGAGGTTGATTTGGAACTCATGGAGAATATTATTAAGGTGAACTTGGGAGCAGTATCTTGGGTGACTAGAGTAGTGCTTCCAGGAATGCTCAAGAAGAAGAAAGGAGCAATTCTCAATATTAGTTCCAATTCAACTCAGCTCCCTTCTTTTCCTCTATACACTCTTTATTCTACAACCAAAGCGTACATTTCCATGTTCTCAAGATGCATTAGTTTGGAATACAAGCAGCAGGGAATTGACATTCAGTGTCAGATTCCTTTTTTCGTGGCAACGAGTTTGACAAAACATTTGAGGGGACTTTCCTGGTTTATGGCATCACCAGAGAAATTTAGCAAAGCAAGCGTTCGCTGGATTGGTTATGAGCCTGTGTGTAACCCCTACTGGTGGCACTCTGTGCAGTGGTTCATATTACGTGTGGCCTCACCGGATGTGTTATTGAATGCCATCATTTACTGGATCTGCATTCGGGTCAGAAAGAGAGGCCAAATGAAGGAGGCACAGAGCAAGAAGATGCATCAACAGGAAATTGCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

325

Amino Acids

36.63

Weight (kDa)

9.11

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 49 - 244 4.3e-39 short chain dehydrogenase
adh_short_C2 PF13561 54 - 247 5.3e-23 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 2 cut(s) 288, 336
AclWI GGATC 2 cut(s) 108, 905
AcoI YGGCCR 1 cut(s) 324
AcsI RAATTY 2 cut(s) 281, 767
AdeI CACNNNGTG 1 cut(s) 835
AfaI GTAC 1 cut(s) 626
AfeI AGCGCT 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 825, 931
AflIII ACRYGT 1 cut(s) 853
AgsI TTSAA 2 cut(s) 573, 880
AjnI CCWGG 3 cut(s) 428, 520, 743
AluBI AGCT 4 cut(s) 71, 257, 350, 580
AluI AGCT 4 cut(s) 71, 257, 350, 580
AlwI GGATC 2 cut(s) 108, 905
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 3 cut(s) 324, 858, 922
ApeKI GCWGC 2 cut(s) 35, 667
ApoI RAATTY 2 cut(s) 281, 767
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 6 cut(s) 148, 325, 490, 514, 750, 855
AsuII TTCGAA 1 cut(s) 206
BalI TGGCCA 1 cut(s) 326
BbvI GCAGC 2 cut(s) 47, 679
BccI CCATC 2 cut(s) 84, 893
BciT130I CCWGG 3 cut(s) 430, 522, 745
BfaI CTAG 2 cut(s) 380, 507
BfoI RGCGCY 1 cut(s) 251
BisI GCNGC 3 cut(s) 36, 337, 668
BlsI GCNGC 3 cut(s) 37, 338, 669
Bme1390I CCNGG 3 cut(s) 430, 522, 745
BmrFI CCNGG 3 cut(s) 430, 522, 745
BmsI GCATC 4 cut(s) 635, 764, 942, 964
BplI GAGNNNNNCTC 2 cut(s) 537, 569
Bpu14I TTCGAA 1 cut(s) 206
BpuEI CTTGAG 4 cut(s) 113, 153, 515, 625
BsaAI YACGTR 1 cut(s) 854
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 865
Bsc4I CCNNNNNNNGG 2 cut(s) 825, 931
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 827, 899
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 430, 522, 745
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 874
BseLI CCNNNNNNNGG 2 cut(s) 825, 931
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 101, 590
BseNI ACTGG 2 cut(s) 827, 899
BseXI GCAGC 2 cut(s) 47, 679
BsgI GTGCAG 1 cut(s) 857
BshFI GGCC 3 cut(s) 326, 860, 924
BsiSI CCGG 2 cut(s) 159, 866
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 2 cut(s) 825, 931
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 3 cut(s) 531, 886, 903
BsnI GGCC 3 cut(s) 326, 860, 924
Bsp119I TTCGAA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 113, 315, 897
BspACI CCGC 2 cut(s) 288, 336
BspANI GGCC 3 cut(s) 326, 860, 924
BspCNI CTCAG 2 cut(s) 102, 589
BspHI TCATGA 1 cut(s) 439
BspPI GGATC 2 cut(s) 108, 905
BspT104I TTCGAA 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 827, 899
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 3 cut(s) 113, 315, 897
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 3 cut(s) 430, 522, 745
Bst6I CTCTTC 1 cut(s) 286
BstAPI GCANNNNNTGC 1 cut(s) 835
BstBAI YACGTR 1 cut(s) 854
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 189, 781
BstDEI CTNAG 2 cut(s) 110, 576
BstEII GGTNACC 1 cut(s) 416
BstF5I GGATG 1 cut(s) 874
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 116, 318, 900
BstMBI GATC 3 cut(s) 113, 315, 897
BstMWI GCNNNNNNNGC 3 cut(s) 254, 780, 835
BstNI CCWGG 3 cut(s) 430, 522, 745
BstPI GGTNACC 1 cut(s) 416
BstSCI CCNGG 3 cut(s) 428, 520, 743
BstV1I GCAGC 2 cut(s) 47, 679
BstX2I RGATCY 2 cut(s) 113, 897
BstYI RGATCY 2 cut(s) 113, 897
BsuRI GGCC 3 cut(s) 326, 860, 924
BtsCI GGATG 1 cut(s) 874
BtsI GCAGTG 1 cut(s) 845
BtsIMutI CAGTG 2 cut(s) 692, 845
Cac8I GCNNGC 2 cut(s) 189, 781
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 158
Csp6I GTAC 1 cut(s) 625
CviAII CATG 6 cut(s) 103, 275, 310, 440, 460, 634
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 2 cut(s) 110, 576
DpnI GATC 3 cut(s) 115, 317, 899
DpnII GATC 3 cut(s) 113, 315, 897
DraIII CACNNNGTG 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 286
EarI CTCTTC 1 cut(s) 286
EciI GGCGGA 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 192
Eco47III AGCGCT 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 428, 520, 743
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 2 cut(s) 650, 957
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 6 cut(s) 106, 278, 313, 443, 463, 637
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 750
FatI CATG 6 cut(s) 102, 274, 309, 439, 459, 633
Fnu4HI GCNGC 3 cut(s) 36, 337, 668
FokI GGATG 1 cut(s) 881
Fsp4HI GCNGC 3 cut(s) 36, 337, 668
FspBI CTAG 2 cut(s) 380, 507
GlaI GCGC 1 cut(s) 249
GluI GCNGC 3 cut(s) 36, 337, 668
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 3 cut(s) 326, 860, 924
HapII CCGG 2 cut(s) 159, 866
HhaI GCGC 1 cut(s) 250
Hin1II CATG 6 cut(s) 106, 278, 313, 443, 463, 637
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 69
HinfI GANTC 3 cut(s) 124, 294, 694
HpaII CCGG 2 cut(s) 159, 866
HphI GGTGA 6 cut(s) 148, 325, 490, 514, 750, 855
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 3 cut(s) 111, 693, 914
Hpy188III TCNNGA 5 cut(s) 226, 298, 440, 532, 642
Hpy8I GTNNAC 1 cut(s) 481
HpyAV CCTTC 5 cut(s) 14, 202, 359, 594, 925
HpyCH4IV ACGT 1 cut(s) 853
HpyCH4V TGCA 8 cut(s) 16, 45, 407, 648, 838, 903, 955, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 780, 835
HpyF3I CTNAG 2 cut(s) 110, 576
HpySE526I ACGT 1 cut(s) 853
Hsp92II CATG 6 cut(s) 106, 278, 313, 443, 463, 637
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 3 cut(s) 113, 315, 897
LmnI GCTCC 3 cut(s) 488, 545, 585
Lsp1109I GCAGC 2 cut(s) 47, 679
LweI GCATC 4 cut(s) 635, 764, 942, 964
MaeI CTAG 2 cut(s) 380, 507
MaeII ACGT 1 cut(s) 853
MaeIII GTNAC 4 cut(s) 154, 416, 502, 812
MalI GATC 3 cut(s) 115, 317, 899
MbiI CCGCTC 1 cut(s) 336
MboI GATC 3 cut(s) 113, 315, 897
MboII GAAGA 5 cut(s) 290, 303, 547, 550, 961
MflI RGATCY 2 cut(s) 113, 897
MlsI TGGCCA 1 cut(s) 326
MluCI AATT 9 cut(s) 11, 174, 281, 329, 549, 568, 675, 767, 966
MluNI TGGCCA 1 cut(s) 326
MlyI GAGTC 1 cut(s) 303
Mox20I TGGCCA 1 cut(s) 326
Mph1103I ATGCAT 2 cut(s) 650, 957
MscI TGGCCA 1 cut(s) 326
MseI TTAA 3 cut(s) 303, 399, 474
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 326
MspI CCGG 2 cut(s) 159, 866
MspR9I CCNGG 3 cut(s) 430, 522, 745
Mva1269I GAATGC 3 cut(s) 531, 886, 903
MvaI CCWGG 3 cut(s) 430, 522, 745
MwoI GCNNNNNNNGC 3 cut(s) 254, 780, 835
NdeII GATC 3 cut(s) 113, 315, 897
NlaIII CATG 6 cut(s) 106, 278, 313, 443, 463, 637
NmuCI GTSAC 2 cut(s) 154, 502
NsiI ATGCAT 2 cut(s) 650, 957
NspV TTCGAA 1 cut(s) 206
PagI TCATGA 1 cut(s) 439
PctI GAATGC 3 cut(s) 531, 886, 903
PfeI GAWTC 2 cut(s) 124, 694
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 3 cut(s) 37, 338, 669
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 854
Psp6I CCWGG 3 cut(s) 428, 520, 743
PspEI GGTNACC 1 cut(s) 416
PspGI CCWGG 3 cut(s) 428, 520, 743
PsuI RGATCY 2 cut(s) 113, 897
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 3 cut(s) 303, 399, 474
SatI GCNGC 3 cut(s) 36, 337, 668
Sau3AI GATC 3 cut(s) 113, 315, 897
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 3 cut(s) 430, 522, 745
SfaNI GCATC 4 cut(s) 635, 764, 942, 964
SfuI TTCGAA 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 4 cut(s) 128, 168, 530, 640
SmoI CTYRAG 4 cut(s) 128, 168, 530, 640
Sse9I AATT 9 cut(s) 11, 174, 281, 329, 549, 568, 675, 767, 966
SsiI CCGC 2 cut(s) 288, 336
SspI AATATT 2 cut(s) 469, 559
SspMI CTAG 2 cut(s) 380, 507
StyD4I CCNGG 3 cut(s) 428, 520, 743
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 856
TaqI TCGA 4 cut(s) 206, 252, 297, 318
TasI AATT 9 cut(s) 11, 174, 281, 329, 549, 568, 675, 767, 966
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 2 cut(s) 124, 694
Tru1I TTAA 3 cut(s) 303, 399, 474
Tru9I TTAA 3 cut(s) 303, 399, 474
TscAI CASTG 2 cut(s) 692, 845
TseFI GTSAC 2 cut(s) 154, 502
TseI GCWGC 2 cut(s) 35, 667
Tsp45I GTSAC 2 cut(s) 154, 502
TspDTI ATGAA 8 cut(s) 16, 43, 64, 282, 291, 428, 835, 944
TspRI CASTG 2 cut(s) 692, 845
XapI RAATTY 2 cut(s) 281, 767
XspI CTAG 2 cut(s) 380, 507
Zsp2I ATGCAT 2 cut(s) 650, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.